LOC102551003 (keratin-associated protein 20-2-like) - Rat Genome Database

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Gene: LOC102551003 (keratin-associated protein 20-2-like) Rattus norvegicus
Analyze
Symbol: LOC102551003
Name: keratin-associated protein 20-2-like
RGD ID: 7637203
Description: Orthologous to human KRTAP22-1 (keratin associated protein 22-1); INTERACTS WITH aflatoxin B1 (ortholog); bisphenol A (ortholog); cyclosporin A (ortholog).
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Bonobo
Dog
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81141,863,076 - 41,863,222 (-)NCBIGRCr8
mRatBN7.21128,376,864 - 28,377,010 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1128,424,496 - 28,424,666 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01129,026,459 - 29,026,891 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1129,026,698 - 29,026,844 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01132,645,185 - 32,645,331 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1128,085,194 - 28,085,387 (-)NCBICelera
Cytogenetic Map11q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
LOC102551003
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81141,863,076 - 41,863,222 (-)NCBIGRCr8
mRatBN7.21128,376,864 - 28,377,010 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1128,424,496 - 28,424,666 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01129,026,459 - 29,026,891 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1129,026,698 - 29,026,844 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01132,645,185 - 32,645,331 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1128,085,194 - 28,085,387 (-)NCBICelera
Cytogenetic Map11q11NCBI
KRTAP22-1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382130,601,087 - 30,601,382 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2130,601,087 - 30,601,382 (+)EnsemblGRCh38hg38GRCh38
GRCh372131,973,406 - 31,973,701 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362130,895,311 - 30,895,457 (+)NCBINCBI36Build 36hg18NCBI36
Build 342130,895,310 - 30,895,457NCBI
Celera2117,156,870 - 17,157,016 (+)NCBICelera
Cytogenetic Map21q22.11NCBI
HuRef2117,382,235 - 17,382,381 (+)NCBIHuRef
CHM1_12131,535,152 - 31,535,298 (+)NCBICHM1_1
T2T-CHM13v2.02128,968,027 - 28,968,322 (+)NCBIT2T-CHM13v2.0
Krtap20-24
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391688,971,680 - 88,971,826 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1688,971,623 - 88,972,087 (+)EnsemblGRCm39 Ensembl
GRCm381689,174,792 - 89,174,938 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1689,174,735 - 89,175,199 (+)EnsemblGRCm38mm10GRCm38
MGSCv361689,224,650 - 89,225,120 (+)NCBIMGSCv36mm8
Celera1689,377,661 - 89,378,113 (+)NCBICelera
Cytogenetic Map16C3.3NCBI
cM Map1651.42NCBI
LOC112438076
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22226,714,786 - 26,715,098 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12121,570,331 - 21,570,643 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02116,964,388 - 16,964,688 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12130,348,952 - 30,349,252 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2130,348,980 - 30,349,126 (+)Ensemblpanpan1.1panPan2
LOC111093559
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13125,551,602 - 25,551,736 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3125,542,659 - 25,542,793 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03125,666,943 - 25,667,077 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3125,666,943 - 25,667,077 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13125,614,370 - 25,614,504 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03125,625,923 - 25,626,057 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03126,094,195 - 26,094,329 (+)NCBIUU_Cfam_GSD_1.0
LOC119621499
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl261,586,562 - 61,586,705 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660714,134,358 - 4,135,202 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11135331169Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)111647204744285911Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

integumental system musculoskeletal system appendage
High
Medium
Low
Below cutoff 1 1 1

Sequence


RefSeq Acc Id: ENSRNOT00000078323   ⟹   ENSRNOP00000068953
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1128,424,496 - 28,424,666 (+)Ensembl
Rnor_6.0 Ensembl1129,026,698 - 29,026,844 (-)Ensembl
RefSeq Acc Id: XM_039088732   ⟹   XP_038944660
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81141,863,076 - 41,863,222 (-)NCBI
mRatBN7.21128,376,864 - 28,377,010 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038944660 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: ENSRNOP00000068953   ⟸   ENSRNOT00000078323
RefSeq Acc Id: XP_038944660   ⟸   XM_039088732

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JU37-F1-model_v2 AlphaFold A0A0G2JU37 1-48 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:7637203 AgrOrtholog
BioCyc Gene G2FUF-22002 BioCyc
Ensembl Genes ENSRNOG00000055713 Ensembl
NCBI Gene LOC102551003 ENTREZGENE
PhenoGen LOC102551003 PhenoGen
RatGTEx ENSRNOG00000055713 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-18 LOC102551003  keratin-associated protein 20-2-like      Symbol and Name status set to provisional 70820 PROVISIONAL