Cfdp1 (craniofacial development protein 1)

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Gene: Cfdp1 (craniofacial development protein 1) Rattus norvegicus

Analyze

Symbol:

Cfdp1

Name:

craniofacial development protein 1

RGD ID:

735080

Description:

Predicted to be involved in chromatin remodeling. Predicted to act upstream of or within several processes, including cell adhesion; negative regulation of fibroblast apoptotic process; and regulation of cell shape. Predicted to be located in kinetochore. Predicted to be part of Swr1 complex. Predicted to be active in nucleus. Orthologous to human CFDP1 (craniofacial development protein 1); INTERACTS WITH beta-naphthoflavone; bisphenol A; Brodifacoum.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

bucentaur

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CFDP1 (craniofacial development protein 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Cfdp1 (craniofacial development protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cfdp1 (craniofacial development protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CFDP1 (craniofacial development protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CFDP1 (craniofacial development protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cfdp1 (craniofacial development protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CFDP1 (craniofacial development protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CFDP1 (craniofacial development protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cfdp1 (craniofacial development protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CFDP1 (craniofacial development protein 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cfdp1 (craniofacial development protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cfdp1 (craniofacial development protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	F39H11.1	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	SWC5	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Yeti	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cfdp1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	19	39,718,313 - 39,823,819 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	39,718,347 - 39,823,824 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	46,593,774 - 46,682,060 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	19	47,247,092 - 47,335,387 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	19	49,491,050 - 49,579,816 (-)	NCBI	Rnor_WKY
Rnor_6.0	19	43,989,596 - 44,078,320 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	43,971,474 - 44,078,336 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	54,796,566 - 54,885,236 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	41,703,586 - 41,792,613 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	19	41,708,466 - 41,797,494 (-)	NCBI
Celera	19	39,095,820 - 39,183,251 (-)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

macular corneal dystrophy (ISO)

paraplegia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-hydroxypropanoic acid (ISO)

5-aza-2'-deoxycytidine (ISO)

aflatoxin B1 (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

beta-naphthoflavone (EXP)

bisphenol A (EXP,ISO)

Brodifacoum (EXP)

CGP 52608 (ISO)

choline (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

Cuprizon (ISO)

diazinon (EXP)

dicrotophos (ISO)

dieldrin (EXP)

dorsomorphin (ISO)

epoxiconazole (ISO)

ethanol (ISO)

fenvalerate (EXP)

finasteride (EXP)

flutamide (EXP)

folic acid (ISO)

haloperidol (ISO)

ivermectin (ISO)

L-methionine (ISO)

methylmercury chloride (ISO)

N-nitrosodiethylamine (EXP)

oxaliplatin (EXP)

paracetamol (ISO)

pentachlorophenol (ISO)

potassium chromate (ISO)

rac-lactic acid (ISO)

rotenone (EXP)

SB 431542 (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tamoxifen (ISO)

tetrachloromethane (ISO)

titanium dioxide (ISO)

topotecan (EXP)

trichostatin A (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell adhesion (ISO)

chromatin remodeling (IBA)

fibroblast apoptotic process (ISO)

negative regulation of fibroblast apoptotic process (ISO)

regulation of cell population proliferation (ISO)

regulation of cell shape (ISO)

Cellular Component

kinetochore (IEA)

nucleus (IBA)

Swr1 complex (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Cloning, gene expression, and characterization of CP27, a novel gene in mouse embryogenesis.	Diekwisch TG, etal., Gene 1999 Jul 22;235(1-2):19-30.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	GOA pipeline	RGD automated data pipeline
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:12153613	PMID:15489334	PMID:32432658

Genomics

Comparative Map Data

Cfdp1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	19	39,718,313 - 39,823,819 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	39,718,347 - 39,823,824 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	46,593,774 - 46,682,060 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	19	47,247,092 - 47,335,387 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	19	49,491,050 - 49,579,816 (-)	NCBI	Rnor_WKY
Rnor_6.0	19	43,989,596 - 44,078,320 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	43,971,474 - 44,078,336 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	54,796,566 - 54,885,236 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	41,703,586 - 41,792,613 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	19	41,708,466 - 41,797,494 (-)	NCBI
Celera	19	39,095,820 - 39,183,251 (-)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

CFDP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	75,293,710 - 75,433,503 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	16	75,293,698 - 75,433,503 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	75,327,608 - 75,467,401 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	73,885,109 - 74,024,888 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	16	73,885,108 - 74,024,888	NCBI
Celera	16	59,621,931 - 59,761,694 (-)	NCBI		Celera
Cytogenetic Map	16	q23.1	NCBI
HuRef	16	61,078,149 - 61,219,205 (-)	NCBI		HuRef
CHM1_1	16	76,740,054 - 76,879,720 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	81,340,442 - 81,479,377 (-)	NCBI		T2T-CHM13v2.0

Cfdp1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	112,493,314 - 112,580,969 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	112,495,123 - 112,580,923 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	111,766,682 - 111,854,337 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	111,768,491 - 111,854,291 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	114,292,373 - 114,378,210 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	114,655,146 - 114,740,983 (-)	NCBI		MGSCv36	mm8
Celera	8	115,996,901 - 116,082,919 (-)	NCBI		Celera
Cytogenetic Map	8	E1	NCBI

Cfdp1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955484	2,085,379 - 2,203,177 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955484	2,085,372 - 2,203,177 (+)	NCBI	ChiLan1.0	ChiLan1.0

CFDP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	16	90,934,992 - 91,075,676 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	55,864,016 - 56,003,243 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	75,214,347 - 75,351,959 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	75,214,588 - 75,351,811 (-)	Ensembl	panpan1.1		panPan2

CFDP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	75,313,165 - 75,442,686 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	75,313,192 - 75,442,686 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	75,290,315 - 75,419,490 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	75,626,973 - 75,799,481 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	75,626,973 - 75,805,114 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	75,562,799 - 75,691,748 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	75,397,980 - 75,526,767 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	75,889,125 - 76,018,416 (+)	NCBI		UU_Cfam_GSD_1.0

Cfdp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	35,424,430 - 35,535,554 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	24,052,963 - 24,164,679 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936475	24,053,558 - 24,164,674 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CFDP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	12,223,748 - 12,354,177 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	12,223,701 - 12,354,180 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	12,077,068 - 12,196,905 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CFDP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	60,775,840 - 60,919,109 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	60,773,986 - 60,919,110 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	15,140,778 - 15,283,531 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cfdp1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	11,489,274 - 11,632,085 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624746	11,489,462 - 11,631,861 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Cfdp1
484 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	872
Count of miRNA genes:	329
Interacting mature miRNAs:	437
Transcripts:	ENSRNOT00000026249
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
9589102	Slep13	Serum leptin concentration QTL 13	4.63	0.001	blood leptin amount (VT:0005667)	plasma leptin level (CMO:0000781)	19	569374	45569374	Rat
8694186	Bw152	Body weight QTL 152	3.34	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	569374	45569374	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2187927	46708701	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2187927	56457239	Rat
61447	Tcas1	Tongue tumor susceptibility QTL 1	6.08		tongue integrity trait (VT:0010553)	squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)	19	2316121	47316121	Rat
2317848	Alcrsp21	Alcohol response QTL 21	1.899999976158142	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	19	3204777	48204777	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	4096155	55283277	Rat
724518	Uae19	Urinary albumin excretion QTL 19	5.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	7457249	42983518	Rat
61423	Cia14	Collagen induced arthritis QTL 14	3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	19	10827970	43544039	Rat
7411549	Bw130	Body weight QTL 130	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	15455860	57337602	Rat
1331788	Rf45	Renal function QTL 45	2.818		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	19	15605023	46559041	Rat
1578764	Stresp19	Stress response QTL 19	3.6	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	19	15630201	57337602	Rat
2298478	Eau8	Experimental allergic uveoretinitis QTL 8		0.0163	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	19	17154433	57337602	Rat
61350	Bp32	Blood pressure QTL 32		0.012	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	19	20483575	57337602	Rat
724546	Kidm3	Kidney mass QTL 3	3.1		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	19	29322490	57337602	Rat
1358200	Insglur2	Insulin/glucose ratio QTL 2	4.1		blood glucose amount (VT:0000188)	serum insulin level (CMO:0000358)	19	33838214	55283146	Rat
1358200	Insglur2	Insulin/glucose ratio QTL 2	4.1		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	19	33838214	55283146	Rat

Markers in Region

RH129513

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	39,734,425 - 39,734,638 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	43,987,889 - 43,988,101	NCBI	Rnor6.0
Rnor_5.0	19	54,794,859 - 54,795,071	UniSTS	Rnor5.0
RGSC_v3.4	19	41,701,879 - 41,702,091	UniSTS	RGSC3.4
Celera	19	39,094,113 - 39,094,325	UniSTS
RH 3.4 Map	19	491.1	UniSTS
Cytogenetic Map	19	q12	UniSTS

RH144415

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	39,807,702 - 39,807,934 (+)	MAPPER	mRatBN7.2
mRatBN7.2	10	100,589,776 - 100,590,008 (-)	MAPPER	mRatBN7.2
mRatBN7.2	10	100,589,776 - 100,590,008 (+)	MAPPER	mRatBN7.2
mRatBN7.2	19	39,807,702 - 39,807,934 (-)	MAPPER	mRatBN7.2
Rnor_6.0	19	44,061,430 - 44,061,661	NCBI	Rnor6.0
Rnor_6.0	10	103,899,382 - 103,899,613	NCBI	Rnor6.0
Rnor_5.0	10	104,392,183 - 104,392,414	UniSTS	Rnor5.0
Rnor_5.0	19	54,868,346 - 54,868,577	UniSTS	Rnor5.0
RGSC_v3.4	19	41,776,075 - 41,776,306	UniSTS	RGSC3.4
RGSC_v3.4	10	105,425,049 - 105,425,280	UniSTS	RGSC3.4
Celera	10	99,165,062 - 99,165,293	UniSTS
Celera	19	39,167,407 - 39,167,638	UniSTS
Cytogenetic Map	19	q12	UniSTS
Cytogenetic Map	10	q32.3	UniSTS

BE110198

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	39,746,458 - 39,746,629 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	43,999,922 - 44,000,092	NCBI	Rnor6.0
Rnor_5.0	19	54,806,892 - 54,807,062	UniSTS	Rnor5.0
RGSC_v3.4	19	41,713,912 - 41,714,082	UniSTS	RGSC3.4
Celera	19	39,106,171 - 39,106,341	UniSTS
RH 3.4 Map	19	486.8	UniSTS
Cytogenetic Map	19	q12	UniSTS

RH141174

Rat Assembly	Chr	Position (strand)	Source	JBrowse
RH 3.4 Map	6	198.5	UniSTS
Cytogenetic Map	19	q12	UniSTS

BQ209669

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	39,735,418 - 39,735,612 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	43,988,883 - 43,989,076	NCBI	Rnor6.0
Rnor_5.0	19	54,795,853 - 54,796,046	UniSTS	Rnor5.0
RGSC_v3.4	19	41,702,873 - 41,703,066	UniSTS	RGSC3.4
Celera	19	39,095,107 - 39,095,300	UniSTS
RH 3.4 Map	19	486.8	UniSTS
Cytogenetic Map	19	q12	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	40	57	41	19	41	7	10	74	35	41	11	7
Low		3					1	1					1
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_199378	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097633	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB125856	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC067246	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473972	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212332	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231593	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000026249 ⟹ ENSRNOP00000026249

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	39,736,117 - 39,823,780 (-)	Ensembl
Rnor_6.0 Ensembl	19	43,989,596 - 44,078,320 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000089873 ⟹ ENSRNOP00000073816

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	39,718,347 - 39,823,747 (-)	Ensembl
Rnor_6.0 Ensembl	19	43,971,474 - 44,078,336 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000112483 ⟹ ENSRNOP00000083789

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	39,734,313 - 39,823,824 (-)	Ensembl

RefSeq Acc Id:

NM_199378 ⟹ NP_955410

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	39,736,132 - 39,823,790 (-)	NCBI
Rnor_6.0	19	43,989,596 - 44,078,320 (-)	NCBI
Rnor_5.0	19	54,796,566 - 54,885,236 (-)	NCBI
RGSC_v3.4	19	41,703,586 - 41,792,613 (-)	RGD
Celera	19	39,095,820 - 39,183,251 (-)	RGD

Sequence:

show sequence

GCTCCCCTCTAGGGCGGCCCTAGCTGCTGGTCCTGTACCTCTATGGTCTCGCCCTAGAGCTTCG
CTATTTTGGGGCAGTGGCCGCAGTCGTGTTGGTAGCAGGCCCCAAGTGACAGCAGCATGGAAGA
ATTCGACTCTGAAGATTTCTCCACATCGGACGAGGATGAGGACTACGTGCCATCGGGTGGCGAG
TACAGTGAAGATGATGTCAATGAATTAGTGAAGGAGGATGAAGTGGATGGTGAAGAGCAGGCTG
AGAAAACCAAAGGGAAAAGAAGGAAGGCTCAGAGCATTCCAGCCAGGAAGAGAAAACAAAGTGG
CCTCTTGTTAGACGAAGAGGAAGACGGCGAGGAAGACTCTGGAGGCAGCAGTAGGGAAGAAGAT
GAAGAGGAGCAAGAAGGAGGCCTCGGGTCAGAGACTTCGAGGAAGAAGAAGGAAGATGAATTGT
GGGCCAGCTTCCTTAATGATGTAGGAACAAAGTCAAAAGCAGCCTCAAGTTCACAAGTTAAGGT
AGCAGAGGAGACTGAAGAGACTAGTTCAAGTAAACCATTGGTGAAAGCAGATGAACTAGAGAAA
CCTAAAGAATCAGAAAAGGTGAAGATTACCAAGGTGTTTGACTTTGCTGGCGAAGAAGTAAGGG
TGACTAAGGAAGTAGATGCTACATCTAAGGAAGCCAAGTCTTTCCTCAAGCAAACAGAGAAAGA
AAAACCACAGGCTCTTGTCACTTCAGCGGCAACACCACCCCCTGCTGGGTCAGGGATAAAAAGA
ACAAGTGGGATGAGCAGCCTTTTAGGGAAAATTGGAGCCAAGAAACAGAAAATGAGCACCCTTG
AGAAATCCAAATTGGACTGGGAGAGCTTCAAGGAGGAAGAAGGGATTGGTGAAGAGCTGGCCAT
CCATAACCGAGGGAAAGAGGGGTACATCGAACGGAAAGCTTTTCTGGAGCGCGTGGACCACAGG
CAGTTTGAAATTGAGCGAGATCTCAGGCTGAGCAAAATGAAACCTTGATGTTCTGGGGAGAATT
CGTAGCAGCTTAATTCTGTTGACAATGTGAGCTCTTCTGTGTGTCTGTGAAATCTCCAGTGGTC
TCCGTCATGTTTCCAGCAAGTCCCTTTTTCTACGTTGCAGTTTGGTTAATGTATCTTAATCTCA
CCTGGTTTCATTTTACTTTTTAAAATTTGTTTTTAAATAAACAAATAGAAGCCCTCTGAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039097633 ⟹ XP_038953561

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	39,718,313 - 39,823,819 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_955410	(Get FASTA)	NCBI Sequence Viewer
	XP_038953561	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH67246	(Get FASTA)	NCBI Sequence Viewer
	BAD01499	(Get FASTA)	NCBI Sequence Viewer
	EDL92589	(Get FASTA)	NCBI Sequence Viewer
	Q75UQ2	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_955410 ⟸ NM_199378

- UniProtKB:

Q75UQ2 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MEEFDSEDFSTSDEDEDYVPSGGEYSEDDVNELVKEDEVDGEEQAEKTKGKRRKAQSIPARKRK
QSGLLLDEEEDGEEDSGGSSREEDEEEQEGGLGSETSRKKKEDELWASFLNDVGTKSKAASSSQ
VKVAEETEETSSSKPLVKADELEKPKESEKVKITKVFDFAGEEVRVTKEVDATSKEAKSFLKQT
EKEKPQALVTSAATPPPAGSGIKRTSGMSSLLGKIGAKKQKMSTLEKSKLDWESFKEEEGIGEE
LAIHNRGKEGYIERKAFLERVDHRQFEIERDLRLSKMKP

hide sequence

RefSeq Acc Id:

ENSRNOP00000073816 ⟸ ENSRNOT00000089873

RefSeq Acc Id:

ENSRNOP00000026249 ⟸ ENSRNOT00000026249

RefSeq Acc Id:	XP_038953561 ⟸ XM_039097633
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K6H5 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000083789 ⟸ ENSRNOT00000112483

Protein Domains

BCNT-C

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q75UQ2-F1-model_v2	AlphaFold	Q75UQ2	1-295	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701153

Promoter ID:

EPDNEW_R11677

Type:

initiation region

Name:

Cfdp1_1

Description:

craniofacial development protein 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	19	44,078,322 - 44,078,382	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:735080	AgrOrtholog
BioCyc Gene	G2FUF-5641	BioCyc
Ensembl Genes	ENSRNOG00000019326	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000026249.3	UniProtKB/TrEMBL
	ENSRNOP00000073816	ENTREZGENE
	ENSRNOP00000073816.1	UniProtKB/TrEMBL
	ENSRNOP00000083789	ENTREZGENE
	ENSRNOP00000083789.1	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000026249.6	UniProtKB/TrEMBL
	ENSRNOT00000089873	ENTREZGENE
	ENSRNOT00000089873.2	UniProtKB/TrEMBL
	ENSRNOT00000112483	ENTREZGENE
	ENSRNOT00000112483.1	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:6889499	IMAGE-MGC_LOAD
InterPro	BCNT-C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Swc5/CFDP1/2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:292027	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:73005	IMAGE-MGC_LOAD
NCBI Gene	292027	ENTREZGENE
PANTHER	CRANIOFACIAL DEVELOPMENT PROTEIN 1	UniProtKB/Swiss-Prot
	CRANIOFACIAL DEVELOPMENT PROTEIN 1	UniProtKB/Swiss-Prot
	CRANIOFACIAL DEVELOPMENT PROTEIN 1	UniProtKB/TrEMBL
	CRANIOFACIAL DEVELOPMENT PROTEIN 1	UniProtKB/TrEMBL
Pfam	BCNT	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Cfdp1	PhenoGen
PROSITE	BCNT_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2K6H5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2QE45_RAT	UniProtKB/TrEMBL
	CFDP1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-07-08	Cfdp1	craniofacial development protein 1			Symbol and Name status set to approved	1299863	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar