Stxbp5 (syntaxin binding protein 5)

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Gene: Stxbp5 (syntaxin binding protein 5) Rattus norvegicus

Analyze

Symbol:

Stxbp5

Name:

syntaxin binding protein 5

RGD ID:

708517

Description:

Enables syntaxin-1 binding activity. Involved in synaptic vesicle cycle. Is active in several cellular components, including Schaffer collateral - CA1 synapse; presynaptic cytosol; and synaptic vesicle. Is extrinsic component of presynaptic membrane. Orthologous to human STXBP5 (syntaxin binding protein 5); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

lethal(2) giant larvae protein homolog 3; syntaxin binding protein 5 (tomosyn); syntaxin-binding protein 5; tomosyn; tomosyn-1

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	STXBP5 (syntaxin binding protein 5)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Stxbp5 (syntaxin binding protein 5 (tomosyn))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Stxbp5 (syntaxin binding protein 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	STXBP5 (syntaxin binding protein 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	STXBP5 (syntaxin binding protein 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Stxbp5 (syntaxin binding protein 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	STXBP5 (syntaxin binding protein 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	STXBP5 (syntaxin binding protein 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Stxbp5 (syntaxin binding protein 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	STXBP5L (syntaxin binding protein 5L)	HGNC	OrthoDB
Alliance orthologs ³
Homo sapiens (human):	STXBP5 (syntaxin binding protein 5)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Stxbp5 (syntaxin binding protein 5 (tomosyn))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	stxbp5b (syntaxin binding protein 5b (tomosyn))	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	stxbp5a (syntaxin binding protein 5a (tomosyn))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Tomosyn	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	SRO7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	SRO77	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	tom-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	1	4,182,489 - 4,335,271 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	4,185,529 - 4,335,101 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	3,859,705 - 4,009,270 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	1	9,860,141 - 10,009,704 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	1	4,141,857 - 4,291,422 (-)	NCBI	Rnor_WKY
Rnor_6.0	1	3,858,917 - 4,011,684 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	3,858,909 - 4,011,511 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	5,532,156 - 5,682,250 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	4,428,182 - 4,579,373 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	4,428,181 - 4,579,373 (-)	NCBI
Celera	1	2,725,757 - 2,875,514 (-)	NCBI		Celera
Cytogenetic Map	1	p13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

2-hydroxypropanoic acid (ISO)

4-amino-2,6-dinitrotoluene (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

CGP 52608 (ISO)

choline (ISO)

chromium(6+) (ISO)

cyclosporin A (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

ethanol (ISO)

fenvalerate (EXP)

folic acid (ISO)

formaldehyde (ISO)

gentamycin (EXP)

ivermectin (ISO)

L-methionine (ISO)

methylmercury chloride (ISO)

oxaliplatin (EXP)

paracetamol (EXP,ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

potassium dichromate (ISO)

quercetin (ISO)

rac-lactic acid (ISO)

SB 431542 (ISO)

sodium arsenate (ISO)

succimer (ISO)

tetrachloromethane (ISO)

topotecan (EXP)

trichostatin A (ISO)

trovafloxacin (ISO)

tungsten (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

exocytosis (IEA,ISO)

positive regulation of exocytosis (IEA,ISO,TAS)

protein transport (IEA)

regulation of exocytosis (IBA,ISO)

regulation of protein secretion (IBA)

regulation of synaptic vesicle exocytosis (IEA,ISO)

regulation of synaptic vesicle priming (IEA,ISO)

synaptic vesicle cycle (IDA,IMP)

Cellular Component

acetylcholine-gated channel complex (IEA,ISO)

cytoplasm (IBA,IEA)

cytosol (IEA,ISO)

extrinsic component of neuronal dense core vesicle membrane (IEA,ISO)

extrinsic component of presynaptic membrane (IDA,IEP)

hippocampal mossy fiber to CA3 synapse (IEA,ISO)

neuromuscular junction (IDA,IEP)

plasma membrane (IBA,IEA)

presynapse (IDA,IEA,ISO)

presynaptic cytosol (IDA,IEP)

Schaffer collateral - CA1 synapse (IDA,IEP)

secretory granule (TAS)

SNARE complex (IBA)

synaptic vesicle (EXP,IDA,IEP)

Molecular Function

GTPase activator activity (IBA)

myosin II binding (IBA)

protein binding (ISO)

syntaxin binding (IBA,ISO)

syntaxin-1 binding (IDA,IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	PKA-catalyzed phosphorylation of tomosyn and its implication in Ca2+-dependent exocytosis of neurotransmitter.	Baba T, etal., J Cell Biol. 2005 Sep 26;170(7):1113-25. doi: 10.1083/jcb.200504055.
2.	Dynamic Partitioning of Synaptic Vesicle Pools by the SNARE-Binding Protein Tomosyn.	Cazares VA, etal., J Neurosci. 2016 Nov 2;36(44):11208-11222. doi: 10.1523/JNEUROSCI.1297-16.2016.
3.	Tomosyn-1 is involved in a post-docking event required for pancreatic beta-cell exocytosis.	Cheviet S, etal., J Cell Sci. 2006 Jul 15;119(Pt 14):2912-20. Epub 2006 Jun 20.
4.	Tomosyn: a syntaxin-1-binding protein that forms a novel complex in the neurotransmitter release process.	Fujita Y, etal., Neuron 1998 May;20(5):905-15.
5.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	Molecular anatomy of a trafficking organelle.	Takamori S, etal., Cell. 2006 Nov 17;127(4):831-46.
9.	Three splicing variants of tomosyn and identification of their syntaxin-binding region.	Yokoyama S, etal., Biochem Biophys Res Commun 1999 Mar 5;256(1):218-22.

Additional References at PubMed

PMID:12782620	PMID:12832401	PMID:14983051	PMID:15240567	PMID:15316007	PMID:16033762	PMID:16505218	PMID:18936251	PMID:19258327	PMID:20633536	PMID:20978127	PMID:21330375
PMID:21810271	PMID:23519441	PMID:24782308	PMID:25063806	PMID:28746398	PMID:29269412

Genomics

Comparative Map Data

Stxbp5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	1	4,182,489 - 4,335,271 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	4,185,529 - 4,335,101 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	3,859,705 - 4,009,270 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	1	9,860,141 - 10,009,704 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	1	4,141,857 - 4,291,422 (-)	NCBI	Rnor_WKY
Rnor_6.0	1	3,858,917 - 4,011,684 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	3,858,909 - 4,011,511 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	5,532,156 - 5,682,250 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	4,428,182 - 4,579,373 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	4,428,181 - 4,579,373 (-)	NCBI
Celera	1	2,725,757 - 2,875,514 (-)	NCBI		Celera
Cytogenetic Map	1	p13	NCBI

STXBP5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	147,204,417 - 147,390,473 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	6	147,204,180 - 147,391,010 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	147,525,553 - 147,711,609 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	147,566,565 - 147,748,588 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	147,566,567 - 147,748,584	NCBI
Celera	6	148,265,949 - 148,449,151 (+)	NCBI		Celera
Cytogenetic Map	6	q24.3	NCBI
HuRef	6	145,089,042 - 145,275,226 (+)	NCBI		HuRef
CHM1_1	6	147,788,922 - 147,975,011 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	148,397,706 - 148,583,768 (+)	NCBI		T2T-CHM13v2.0

Stxbp5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	9,631,285 - 9,776,987 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	9,631,291 - 9,776,823 (-)	Ensembl		GRCm39 Ensembl
GRCm38	10	9,755,547 - 9,901,287 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	9,755,547 - 9,901,079 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	9,475,345 - 9,620,838 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	9,445,737 - 9,590,873 (-)	NCBI		MGSCv36	mm8
Celera	10	9,659,963 - 9,805,506 (-)	NCBI		Celera
Cytogenetic Map	10	A1	NCBI

Stxbp5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955439	13,580,113 - 13,743,430 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955439	13,580,106 - 13,743,430 (-)	NCBI	ChiLan1.0	ChiLan1.0

STXBP5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	6	165,106,847 - 165,292,795 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	145,006,696 - 145,192,467 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	149,719,064 - 149,905,007 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	149,719,064 - 149,902,662 (+)	Ensembl	panpan1.1		panPan2

STXBP5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	38,271,238 - 38,439,088 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	38,271,154 - 38,434,042 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	39,170,639 - 39,338,349 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	38,443,072 - 38,612,992 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	38,443,201 - 38,605,356 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	38,320,755 - 38,488,319 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	38,190,698 - 38,358,426 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	38,529,557 - 38,697,531 (+)	NCBI		UU_Cfam_GSD_1.0

Stxbp5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	133,351,292 - 133,522,798 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936489	612,124 - 768,722 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936489	449,029 - 771,870 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

STXBP5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	18,345,363 - 18,513,252 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	18,343,826 - 18,512,750 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	20,543,226 - 20,705,846 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

STXBP5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	24,365,022 - 24,559,249 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	13	24,367,627 - 24,559,269 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	200,313,238 - 200,504,306 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Stxbp5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624785	10,692,257 - 10,874,285 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624785	10,692,573 - 10,874,358 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Stxbp5
882 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	217
Count of miRNA genes:	79
Interacting mature miRNAs:	84
Transcripts:	ENSRNOT00000040559, ENSRNOT00000044778, ENSRNOT00000049699
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354647	Despr8	Despair related QTL 8		0.0000341	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	1	1	24744506	Rat
2298546	Neuinf4	Neuroinflammation QTL 4	5.1		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	1	1	28736750	Rat
2313053	Bss51	Bone structure and strength QTL 51	3.8	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	1	32356093	Rat
2313070	Bss52	Bone structure and strength QTL 52	4.4	0.0001	body length (VT:0001256)	body length (CMO:0000013)	1	1	32356093	Rat
2313090	Bmd69	Bone mineral density QTL 69	4.4	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	1	32356093	Rat
738020	Pia8	Pristane induced arthritis QTL 8	4.7		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	1	65833076	Rat
1578650	Bmd6	Bone mineral density QTL 6	12.2		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	1	509108	43284926	Rat
1578651	Bmd7	Bone mineral density QTL 7	14.2		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	1	509108	43284926	Rat
1578669	Bss9	Bone structure and strength QTL 9	6.3		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	1	509108	43284926	Rat
1554320	Bmd1	Bone mineral density QTL 1	12.2	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	509108	86060548	Rat
1600360	Mcs16	Mammary carcinoma susceptibility QTL 16	2.4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	1	2244390	43433040	Rat
1300170	Rf6	Renal function QTL 6	3.14		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	1	4162807	11481482	Rat

Markers in Region

RH144675

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	4,185,283 - 4,185,446 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	3,861,708 - 3,861,870	NCBI	Rnor6.0
Rnor_5.0	1	5,534,947 - 5,535,109	UniSTS	Rnor5.0
RGSC_v3.4	1	4,427,937 - 4,428,099	UniSTS	RGSC3.4
Celera	1	2,725,512 - 2,725,674	UniSTS
RH 3.4 Map	1	77.6	UniSTS
Cytogenetic Map	1	p13	UniSTS

BF390393

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	4,279,606 - 4,279,826 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	3,956,028 - 3,956,247	NCBI	Rnor6.0
Rnor_5.0	1	5,627,828 - 5,628,047	UniSTS	Rnor5.0
RGSC_v3.4	1	4,522,518 - 4,522,736	UniSTS	RGSC3.4
Celera	1	2,819,704 - 2,819,923	UniSTS
RH 3.4 Map	1	77.2	UniSTS
Cytogenetic Map	1	p13	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2		17	6	19	6			74	33	34	11
Low	1	43	40	35		35	8	11		2	7		8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_030843	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_178345	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_178346	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006227623	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006227624	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008758628	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008758629	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091853	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091859	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091862	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091865	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091871	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091874	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091879	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091888	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005492935	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005492946	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005492948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC096981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF118889	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF118890	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473994	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ217480	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U92072	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000040559 ⟹ ENSRNOP00000044738

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	4,185,529 - 4,335,101 (-)	Ensembl
Rnor_6.0 Ensembl	1	3,861,953 - 4,011,511 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000044778 ⟹ ENSRNOP00000039502

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	4,187,467 - 4,335,101 (-)	Ensembl
Rnor_6.0 Ensembl	1	3,862,091 - 4,011,161 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000049699 ⟹ ENSRNOP00000049322

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	4,185,529 - 4,335,101 (-)	Ensembl
Rnor_6.0 Ensembl	1	3,858,909 - 4,011,353 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000094037 ⟹ ENSRNOP00000087436

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	4,185,529 - 4,335,101 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000096129 ⟹ ENSRNOP00000095824

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	4,185,529 - 4,335,101 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000100093 ⟹ ENSRNOP00000092275

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	4,185,529 - 4,335,101 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000115103 ⟹ ENSRNOP00000092947

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	4,185,529 - 4,335,101 (-)	Ensembl

RefSeq Acc Id:

NM_030843 ⟹ NP_110470

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	4,185,529 - 4,335,101 (-)	NCBI
Rnor_6.0	1	3,861,953 - 4,011,511 (-)	NCBI
Rnor_5.0	1	5,532,156 - 5,682,250 (-)	NCBI
RGSC_v3.4	1	4,428,182 - 4,579,373 (-)	RGD
Celera	1	2,725,757 - 2,875,514 (-)	RGD

Sequence:

show sequence

GCCGGGCGGCTGCGCTGAGCAGAGGCCGAGCCCGGGACGCGCCGAGGGACTGCGGGGCTGCGGG
TCATGGATGCGGCGGCAGCGGCGCGGGACGGCGGGAGCCCGGCCGCGACCAGGTGAGGAGGCGG
CGTCCGGCGCCACTGCAGCCGCAGCGGCCTCGGAGGAAGAGGGCTCGCCGCCGCGCGCCCGCCC
GCCGTCGCTGCCCTTCCTGTTGGGATTATCTTCTGCTCCCCGCTGCTTCTTCGCTCCCCGCGGT
CGAAGCCGCCTCTAGGCTTCAGCGGCTCGGACTCCTTGGCAGCCGGTGCCTCTGCTACCTGGGC
CTCGTAGCTGGGAGACCCTTGGGCGAGACCATGAGGAAATTCAACATCAGGAAGGTGCTGGACG
GCCTGACCGCAGGCTCGTCCTCGGCCTCGCAACAGCAGCAACAGCAGCAGCACCCGCCTGGGAA
CCGGGAGCCCGAGATCCAGGAGACGCTCCAGTCCGAGCACTTCCAACTCTGCAAGACTGTTCGC
CATGGATTTCCCTATCAGCCCTCAGCCCTGGCCTTTGATCCCGTTCAGAAGATCCTGGCGGTAG
GAACCCAGACTGGTGCTTTAAGGCTCTTTGGTCGTCCAGGGGTGGAATGTTATTGCCAGCACGA
CAGCGGAGCGGCAGTGATTCAACTCCAGTTCCTGATTAATGAGGGAGCCCTTGTGAGTGCCTTG
GCTGATGACACCTTACACTTGTGGAATTTACGTCAGAAAAGGCCTGCTGTGCTACATTCACTCA
AATTTTGCAGAGAAAGGGTTACATTTTGCCATCTGCCTTTCCAGAGTAAGTGGCTCTATGTGGG
CACGGAACGAGGTAATATACATATTGTCAATGTGGAGTCCTTCACACTCTCAGGCTACGTCATT
ATGTGGAATAAAGCCATCGAACTGTCATCTAAATCTCACCCAGGACCTGTTGTCCATATAAGTG
ATAATCCCATGGACGAGGGGAAGCTTCTGATTGGCTTTGAATCTGGAACAGTAGTCTTATGGGA
CCTTAAGTCAAAGAAGGCTGACTACAGATACACTTACGACGAGGCTATTCACTCTGTGGCTTGG
CATCATGAAGGAAAACAGTTTATTTGCAGTCATTCTGATGGTACATTGACCATATGGAATGTGA
GGTCCCCTACTAAACCTGTACAGACCATCACTCCTCACGGAAAACAGTTAAAGGATGGGAAGAA
ACCCGAGCCGTGCAAGCCTATCCTCAAGGTGGAGTTCAAGACAACAAGATCGGGGGAACCTTTT
ATTATTTTGTCGGGAGGCTTATCATATGATACCGTGGGAAGAAGACCTTGCTTAACAGTGATGC
ATGGGAAAAGCACGGCAGTGCTGGAAATGGACTATTCAATTGTCGACTTTCTCACACTCTGTGA
AACGCCATATCCAAATGATTTTCAGGAGCCGTATGCTGTGGTTGTTCTCCTGGAGAAGGATTTA
GTGCTGATAGACCTGGCACAGAATGGATACCCTATATTTGAGAATCCCTACCCTTTGAGTATAC
ACGAGTCCCCTGTTACATGTTGTGAATATTTTGCTGATTGTCCTGTGGACCTTATTCCTGCACT
TTATTCTGTTGGAGCTAGACAGAAACGTCAAGGTTACAGCAAAAAGGAATGGCCCATCAATGGT
GGTAATTGGGGCTTGGGTGCTCAAAGTTACCCAGAAATAATTATTACAGGGCATGCTGATGGCT
CAATTAAATTCTGGGATGCTTCTGCAATAACTCTACAAGTACTGTATAAATTAAAAACATCTAA
AGTATTTGAAAAGTCAAGAAATAAAGATGACAGACAGAACACCGACATTGTAGATGAAGATCCA
TATGCCATTCAGATCATCTCCTGGTGCCCAGAGAGCAGAATGCTGTGCATAGCCGGAGTGTCGG
CTCATGTCATCATTTATAGATTCAGCAAGCAGGAAGTGGTTACAGAAGTCATCCCGATGCTTGA
AGTCCGACTGTTATATGAAATAAATGATGTGGAAACGCCGGAGGGTGAGCAGCCACCCCCTTTG
TCCACTCCCGTGGGCAGCTCCACCTCTCAGCCCATCCCCCCTCAGTCTCATCCGTCTACCAGCA
GCAGCTCATCGGACGGGCTTCGAGATAATGTACCGTGTTTAAAAGTTAAAAACTCACCACTTAA
ACAGTCTCCCGGCTATCAAACAGAGCTAGTCATCCAGTTGGTGTGGGTGGGTGGAGAACCCCCG
CAGCAGATCACCAGCCTAGCACTCAACTCTTCCTACGGATTGGTGGTTTTCGGCAACTCCAATG
GCATTGCAATGGTTGACTACCTCCAGAAAGCAGTGCTGCTCAACCTCAGCACCATTGAACTATA
CGGCTCAAATGATCCTTATCGGAGAGAACCGAGGTCGCCCCGCAAATCTCGACAGCCTTCAGGA
GCGGGCCTGTGTGATATTACCGAAGGAACTGTCGTCCCAGAGGATCGCTGCAAATCTCCGACTT
CCGCAAAGATGTCAAGGAAATTAAGCTTGCCAACTGATCTAAAGCCTGATTTAGATGTGAAAGA
CAATTCCTTCAGCAGATCTCGGAGTTCAAGTGTGACCAGCATTGACAAAGAGTCCCGGGAAGCC
ATTTCTGCTCTTCATTTCTGTGAGACTTTCACAAGGAAGGCAGACTCCTCCCCCTCCCCGTGCC
TGTGGGTGGGAACCACAGTGGGAACTGCCTTTGTCATCACGCTGAATCTCCCCCTGGGGCCTGA
GCAGAGACTGCTTCAGCCAGTGATTGTGTCTCCAAGCGGTACTATATTGAGGTTAAAAGGTGCG
ATCTTGAGAATGGCATTTCTGGATGCCGCGGGCTGCTTAATGCCACCTGCATACGAACCCTGGA
CAGAGCACAACGTTCCTGAAGAAAAAGACGAAAAGGAGAAATTGAAAAAGCGGCGACCTGTCTC
AGTGTCCCCCTCCTCTTCTCAGGAAATTAGTGAAAACCAGTACGCAGTGATATGTTCTGAAAAG
CAAGCAAAGGTCATCTCACTGCCAACCCAGAACTGTGCATACAAGCAGAACATCACTGAGACGT
CCTTCGTGCTCCGTGGAGACATTGTCGCCCTGAGTAACAGTGTCTGCCTCGCCTGCTTCTGTGC
CAACGGCCACATTATGACTTTCAGTTTGCCGAGCTTGAGGCCTCTGCTGGATGTCTACTACCTG
CCCCTTACCAACATGCGGATAGCCAGGACATTCTGCTTCGCCAACAGTGGGCAAGCCTTATACC
TTGTTTCACCTACCGAAATCCAGAGACTCACCTACAGTCAGGAGACGTGTGAAAACCTTCAGGA
GATGCTTGGTGAGCTCTTCACGCCTGTAGAAACACCAGAAGCACCAAACAGAGGGTTCTTCAAA
GGCTTATTTGGAGGTGGTGCACAATCTCTTGATAGAGAAGAACTGTTTGGAGAGTCATCCTCGG
GAAAGGCGTCAAGGAGCCTTGCACAGCACATCCCGGGTCCTGGCGGGATCGAAGGTGTGAAGGG
AGCCGCGTCGGGAGTGGTGGGAGAACTGGCCCGAGCCAGGCTGGCCCTCGACGAAAGAGGACAG
AAGCTCAGCGACTTGGAAGAGAGGACTGCAGCCATGATGTCCAGTGCAGACTCGTTTTCCAAAC
ATGCTCATGAGATGATGCTGAAATACAAAGATAAGAAGTGGTACCAGTTCTGACAAGTAGCACT
CAGTAAGTCCAGCTTCAACCAGAAGGAAAAAGACGTTTCCTTGTTGAGGTCACTGATGTATTTG
GGAAAGATAACATAAAAGGGATGCACACTGCTGACAGCGTCTTTCCCAGCACAATCATGCACT

hide sequence

RefSeq Acc Id:

NM_178345 ⟹ NP_848035

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	4,185,667 - 4,334,751 (-)	NCBI
Rnor_6.0	1	3,862,091 - 4,011,161 (-)	NCBI
Rnor_5.0	1	5,532,156 - 5,682,250 (-)	NCBI
RGSC_v3.4	1	4,428,182 - 4,579,373 (-)	RGD
Celera	1	2,725,895 - 2,875,164 (-)	NCBI

Sequence:

show sequence

ATGAGGAAATTCAACATCAGGAAGGTGCTGGACGGCCTGACCGCAGGCTCGTCCTCGGCCTCGC
AACAGCAGCAACAGCAGCAGCACCCGCCTGGGAACCGGGAGCCCGAGATCCAGGAGACGCTCCA
GTCCGAGCACTTCCAACTCTGCAAGACTGTTCGCCATGGATTTCCCTATCAGCCCTCAGCCCTG
GCCTTTGATCCCGTTCAGAAGATCCTGGCGGTAGGAACCCAGACTGGTGCTTTAAGGCTCTTTG
GTCGTCCAGGGGTGGAATGTTATTGCCAGCACGACAGCGGAGCGGCAGTGATTCAACTCCAGTT
CCTGATTAATGAGGGAGCCCTTGTGAGTGCCTTGGCTGATGACACCTTACACTTGTGGAATTTA
CGTCAGAAAAGGCCTGCTGTGCTACATTCACTCAAATTTTGCAGAGAAAGGGTTACATTTTGCC
ATCTGCCTTTCCAGAGTAAGTGGCTCTATGTGGGCACGGAACGAGGTAATATACATATTGTCAA
TGTGGAGTCCTTCACACTCTCAGGCTACGTCATTATGTGGAATAAAGCCATCGAACTGTCATCT
AAATCTCACCCAGGACCTGTTGTCCATATAAGTGATAATCCCATGGACGAGGGGAAGCTTCTGA
TTGGCTTTGAATCTGGAACAGTAGTCTTATGGGACCTTAAGTCAAAGAAGGCTGACTACAGATA
CACTTACGACGAGGCTATTCACTCTGTGGCTTGGCATCATGAAGGAAAACAGTTTATTTGCAGT
CATTCTGATGGTACATTGACCATATGGAATGTGAGGTCCCCTACTAAACCTGTACAGACCATCA
CTCCTCACGGAAAACAGTTAAAGGATGGGAAGAAACCCGAGCCGTGCAAGCCTATCCTCAAGGT
GGAGTTCAAGACAACAAGATCGGGGGAACCTTTTATTATTTTGTCGGGAGGCTTATCATATGAT
ACCGTGGGAAGAAGACCTTGCTTAACAGTGATGCATGGGAAAAGCACGGCAGTGCTGGAAATGG
ACTATTCAATTGTCGACTTTCTCACACTCTGTGAAACGCCATATCCAAATGATTTTCAGGAGCC
GTATGCTGTGGTTGTTCTCCTGGAGAAGGATTTAGTGCTGATAGACCTGGCACAGAATGGATAC
CCTATATTTGAGAATCCCTACCCTTTGAGTATACACGAGTCCCCTGTTACATGTTGTGAATATT
TTGCTGATTGTCCTGTGGACCTTATTCCTGCACTTTATTCTGTTGGAGCTAGACAGAAACGTCA
AGGTTACAGCAAAAAGGAATGGCCCATCAATGGTGGTAATTGGGGCTTGGGTGCTCAAAGTTAC
CCAGAAATAATTATTACAGGGCATGCTGATGGCTCAATTAAATTCTGGGATGCTTCTGCAATAA
CTCTACAAGTACTGTATAAATTAAAAACATCTAAAGTATTTGAAAAGTCAAGAAATAAAGATGA
CAGACAGAACACCGACATTGTAGATGAAGATCCATATGCCATTCAGATCATCTCCTGGTGCCCA
GAGAGCAGAATGCTGTGCATAGCCGGAGTGTCGGCTCATGTCATCATTTATAGATTCAGCAAGC
AGGAAGTGGTTACAGAAGTCATCCCGATGCTTGAAGTCCGACTGTTATATGAAATAAATGATGT
GGAAACGCCGGAGGGTGAGCAGCCACCCCCTTTGTCCACTCCCGTGGGCAGCTCCACCTCTCAG
CCCATCCCCCCTCAGTCTCATCCGTCTACCAGCAGCAGCTCATCGGACGGGCTTCGAGATAATG
TACCGTGTTTAAAAGTTAAAAACTCACCACTTAAACAGTCTCCCGGCTATCAAACAGAGCTAGT
CATCCAGTTGGTGTGGGTGGGTGGAGAACCCCCGCAGCAGATCACCAGCCTAGCACTCAACTCT
TCCTACGGATTGGTGGTTTTCGGCAACTCCAATGGCATTGCAATGGTTGACTACCTCCAGAAAG
CAGTGCTGCTCAACCTCAGCACCATTGAACTATACGGCTCAAATGATCCTTATCGGAGAGAACC
GAGGTCGCCCCGCAAATCTCGACAGCCTTCAGGAGCGGGCCTGTGTGATATTACCGAAGGAACT
GTCGTCCCAGAGGATCGCTGCAAATCTCCGACTTCCGGTTCTTCCTCGCCACACAATTCAGACG
ATGAACAAAAAGTGAATAATTTTATAGAAAAGGTGAAGACCCAAAGCAGAAAGTTTTCCAAGAT
GGTAGCCAGTGATCTAGCAAAGATGTCAAGGAAATTAAGCTTGCCAACTGATCTAAAGCCTGAT
TTAGATGTGAAAGACAATTCCTTCAGCAGATCTCGGAGTTCAAGTGTGACCAGCATTGACAAAG
AGTCCCGGGAAGCCATTTCTGCTCTTCATTTCTGTGAGACTTTCACAAGGAAGGCAGACTCCTC
CCCCTCCCCGTGCCTGTGGGTGGGAACCACAGTGGGAACTGCCTTTGTCATCACGCTGAATCTC
CCCCTGGGGCCTGAGCAGAGACTGCTTCAGCCAGTGATTGTGTCTCCAAGCGGTACTATATTGA
GGTTAAAAGGTGCGATCTTGAGAATGGCATTTCTGGATGCCGCGGGCTGCTTAATGCCACCTGC
ATACGAACCCTGGACAGAGCACAACGTTCCTGAAGAAAAAGACGAAAAGGAGAAATTGAAAAAG
CGGCGACCTGTCTCAGTGTCCCCCTCCTCTTCTCAGGAAATTAGTGAAAACCAGTACGCAGTGA
TATGTTCTGAAAAGCAAGCAAAGGTCATCTCACTGCCAACCCAGAACTGTGCATACAAGCAGAA
CATCACTGAGACGTCCTTCGTGCTCCGTGGAGACATTGTCGCCCTGAGTAACAGTGTCTGCCTC
GCCTGCTTCTGTGCCAACGGCCACATTATGACTTTCAGTTTGCCGAGCTTGAGGCCTCTGCTGG
ATGTCTACTACCTGCCCCTTACCAACATGCGGATAGCCAGGACATTCTGCTTCGCCAACAGTGG
GCAAGCCTTATACCTTGTTTCACCTACCGAAATCCAGAGACTCACCTACAGTCAGGAGACGTGT
GAAAACCTTCAGGAGATGCTTGGTGAGCTCTTCACGCCTGTAGAAACACCAGAAGCACCAAACA
GAGGGTTCTTCAAAGGCTTATTTGGAGGTGGTGCACAATCTCTTGATAGAGAAGAACTGTTTGG
AGAGTCATCCTCGGGAAAGGCGTCAAGGAGCCTTGCACAGCACATCCCGGGTCCTGGCGGGATC
GAAGGTGTGAAGGGAGCCGCGTCGGGAGTGGTGGGAGAACTGGCCCGAGCCAGGCTGGCCCTCG
ACGAAAGAGGACAGAAGCTCAGCGACTTGGAAGAGAGGACTGCAGCCATGATGTCCAGTGCAGA
CTCGTTTTCCAAACATGCTCATGAGATGATGCTGAAATACAAAGATAAGAAGTGGTACCAGTTC
TGA

hide sequence

RefSeq Acc Id:

NM_178346 ⟹ NP_848036

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	4,185,667 - 4,334,751 (-)	NCBI
Rnor_6.0	1	3,862,091 - 4,011,161 (-)	NCBI
Rnor_5.0	1	5,532,156 - 5,682,250 (-)	NCBI
RGSC_v3.4	1	4,428,182 - 4,579,373 (-)	RGD
Celera	1	2,725,895 - 2,875,164 (-)	NCBI

Sequence:

show sequence

ATGAGGAAATTCAACATCAGGAAGGTGCTGGACGGCCTGACCGCAGGCTCGTCCTCGGCCTCGC
AACAGCAGCAACAGCAGCAGCACCCGCCTGGGAACCGGGAGCCCGAGATCCAGGAGACGCTCCA
GTCCGAGCACTTCCAACTCTGCAAGACTGTTCGCCATGGATTTCCCTATCAGCCCTCAGCCCTG
GCCTTTGATCCCGTTCAGAAGATCCTGGCGGTAGGAACCCAGACTGGTGCTTTAAGGCTCTTTG
GTCGTCCAGGGGTGGAATGTTATTGCCAGCACGACAGCGGAGCGGCAGTGATTCAACTCCAGTT
CCTGATTAATGAGGGAGCCCTTGTGAGTGCCTTGGCTGATGACACCTTACACTTGTGGAATTTA
CGTCAGAAAAGGCCTGCTGTGCTACATTCACTCAAATTTTGCAGAGAAAGGGTTACATTTTGCC
ATCTGCCTTTCCAGAGTAAGTGGCTCTATGTGGGCACGGAACGAGGTAATATACATATTGTCAA
TGTGGAGTCCTTCACACTCTCAGGCTACGTCATTATGTGGAATAAAGCCATCGAACTGTCATCT
AAATCTCACCCAGGACCTGTTGTCCATATAAGTGATAATCCCATGGACGAGGGGAAGCTTCTGA
TTGGCTTTGAATCTGGAACAGTAGTCTTATGGGACCTTAAGTCAAAGAAGGCTGACTACAGATA
CACTTACGACGAGGCTATTCACTCTGTGGCTTGGCATCATGAAGGAAAACAGTTTATTTGCAGT
CATTCTGATGGTACATTGACCATATGGAATGTGAGGTCCCCTACTAAACCTGTACAGACCATCA
CTCCTCACGGAAAACAGTTAAAGGATGGGAAGAAACCCGAGCCGTGCAAGCCTATCCTCAAGGT
GGAGTTCAAGACAACAAGATCGGGGGAACCTTTTATTATTTTGTCGGGAGGCTTATCATATGAT
ACCGTGGGAAGAAGACCTTGCTTAACAGTGATGCATGGGAAAAGCACGGCAGTGCTGGAAATGG
ACTATTCAATTGTCGACTTTCTCACACTCTGTGAAACGCCATATCCAAATGATTTTCAGGAGCC
GTATGCTGTGGTTGTTCTCCTGGAGAAGGATTTAGTGCTGATAGACCTGGCACAGAATGGATAC
CCTATATTTGAGAATCCCTACCCTTTGAGTATACACGAGTCCCCTGTTACATGTTGTGAATATT
TTGCTGATTGTCCTGTGGACCTTATTCCTGCACTTTATTCTGTTGGAGCTAGACAGAAACGTCA
AGGTTACAGCAAAAAGGAATGGCCCATCAATGGTGGTAATTGGGGCTTGGGTGCTCAAAGTTAC
CCAGAAATAATTATTACAGGGCATGCTGATGGCTCAATTAAATTCTGGGATGCTTCTGCAATAA
CTCTACAAGTACTGTATAAATTAAAAACATCTAAAGTATTTGAAAAGTCAAGAAATAAAGATGA
CAGACAGAACACCGACATTGTAGATGAAGATCCATATGCCATTCAGATCATCTCCTGGTGCCCA
GAGAGCAGAATGCTGTGCATAGCCGGAGTGTCGGCTCATGTCATCATTTATAGATTCAGCAAGC
AGGAAGTGGTTACAGAAGTCATCCCGATGCTTGAAGTCCGACTGTTATATGAAATAAATGATGT
GGAAACGCCGGAGGGTGAGCAGCCACCCCCTTTGTCCACTCCCGTGGGCAGCTCCACCTCTCAG
CCCATCCCCCCTCAGTCTCATCCGTCTACCAGCAGCAGCTCATCGGACGGGCTTCGAGATAATG
TACCGTGTTTAAAAGTTAAAAACTCACCACTTAAACAGTCTCCCGGCTATCAAACAGAGCTAGT
CATCCAGTTGGTGTGGGTGGGTGGAGAACCCCCGCAGCAGATCACCAGCCTAGCACTCAACTCT
TCCTACGGATTGGTGGTTTTCGGCAACTCCAATGGCATTGCAATGGTTGACTACCTCCAGAAAG
CAGTGCTGCTCAACCTCAGCACCATTGAACTATACGGCTCAAATGATCCTTATCGGAGAGAACC
GAGGTCGCCCCGCAAATCTCGACAGCCTTCAGGAGCGGGCCTGTGTGATATTACCGAAGGAACT
GTCGTCCCAGAGGATCGCTGCAAATCTCCGACTTCCGATGTGAAAGACAATTCCTTCAGCAGAT
CTCGGAGTTCAAGTGTGACCAGCATTGACAAAGAGTCCCGGGAAGCCATTTCTGCTCTTCATTT
CTGTGAGACTTTCACAAGGAAGGCAGACTCCTCCCCCTCCCCGTGCCTGTGGGTGGGAACCACA
GTGGGAACTGCCTTTGTCATCACGCTGAATCTCCCCCTGGGGCCTGAGCAGAGACTGCTTCAGC
CAGTGATTGTGTCTCCAAGCGGTACTATATTGAGGTTAAAAGGTGCGATCTTGAGAATGGCATT
TCTGGATGCCGCGGGCTGCTTAATGCCACCTGCATACGAACCCTGGACAGAGCACAACGTTCCT
GAAGAAAAAGACGAAAAGGAGAAATTGAAAAAGCGGCGACCTGTCTCAGTGTCCCCCTCCTCTT
CTCAGGAAATTAGTGAAAACCAGTACGCAGTGATATGTTCTGAAAAGCAAGCAAAGGTCATCTC
ACTGCCAACCCAGAACTGTGCATACAAGCAGAACATCACTGAGACGTCCTTCGTGCTCCGTGGA
GACATTGTCGCCCTGAGTAACAGTGTCTGCCTCGCCTGCTTCTGTGCCAACGGCCACATTATGA
CTTTCAGTTTGCCGAGCTTGAGGCCTCTGCTGGATGTCTACTACCTGCCCCTTACCAACATGCG
GATAGCCAGGACATTCTGCTTCGCCAACAGTGGGCAAGCCTTATACCTTGTTTCACCTACCGAA
ATCCAGAGACTCACCTACAGTCAGGAGACGTGTGAAAACCTTCAGGAGATGCTTGGTGAGCTCT
TCACGCCTGTAGAAACACCAGAAGCACCAAACAGAGGGTTCTTCAAAGGCTTATTTGGAGGTGG
TGCACAATCTCTTGATAGAGAAGAACTGTTTGGAGAGTCATCCTCGGGAAAGGCGTCAAGGAGC
CTTGCACAGCACATCCCGGGTCCTGGCGGGATCGAAGGTGTGAAGGGAGCCGCGTCGGGAGTGG
TGGGAGAACTGGCCCGAGCCAGGCTGGCCCTCGACGAAAGAGGACAGAAGCTCAGCGACTTGGA
AGAGAGGACTGCAGCCATGATGTCCAGTGCAGACTCGTTTTCCAAACATGCTCATGAGATGATG
CTGAAATACAAAGATAAGAAGTGGTACCAGTTCTGA

hide sequence

RefSeq Acc Id:

XM_039091853 ⟹ XP_038947781

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	4,182,489 - 4,335,267 (-)	NCBI

RefSeq Acc Id:

XM_039091859 ⟹ XP_038947787

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	4,202,786 - 4,335,271 (-)	NCBI

RefSeq Acc Id:

XM_039091862 ⟹ XP_038947790

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	4,206,799 - 4,335,271 (-)	NCBI

RefSeq Acc Id:

XM_039091865 ⟹ XP_038947793

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	4,207,771 - 4,335,271 (-)	NCBI

RefSeq Acc Id:

XM_039091871 ⟹ XP_038947799

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	4,202,786 - 4,335,270 (-)	NCBI

RefSeq Acc Id:

XM_039091874 ⟹ XP_038947802

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	4,207,771 - 4,335,270 (-)	NCBI

RefSeq Acc Id:

XM_039091879 ⟹ XP_038947807

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	4,202,787 - 4,335,270 (-)	NCBI

RefSeq Acc Id:

XM_039091888 ⟹ XP_038947816

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	4,210,040 - 4,335,270 (-)	NCBI

RefSeq Acc Id:

XR_005492935

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	4,195,715 - 4,335,271 (-)	NCBI

RefSeq Acc Id:

XR_005492946

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	4,195,715 - 4,335,270 (-)	NCBI

RefSeq Acc Id:

XR_005492948

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	4,195,715 - 4,335,270 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_110470	(Get FASTA)	NCBI Sequence Viewer
	NP_848035	(Get FASTA)	NCBI Sequence Viewer
	NP_848036	(Get FASTA)	NCBI Sequence Viewer
	XP_038947781	(Get FASTA)	NCBI Sequence Viewer
	XP_038947787	(Get FASTA)	NCBI Sequence Viewer
	XP_038947790	(Get FASTA)	NCBI Sequence Viewer
	XP_038947793	(Get FASTA)	NCBI Sequence Viewer
	XP_038947799	(Get FASTA)	NCBI Sequence Viewer
	XP_038947802	(Get FASTA)	NCBI Sequence Viewer
	XP_038947807	(Get FASTA)	NCBI Sequence Viewer
	XP_038947816	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAD04756	(Get FASTA)	NCBI Sequence Viewer
	AAD27818	(Get FASTA)	NCBI Sequence Viewer
	AAD27819	(Get FASTA)	NCBI Sequence Viewer
	EDL93700	(Get FASTA)	NCBI Sequence Viewer
	EDL93701	(Get FASTA)	NCBI Sequence Viewer
	EDL93702	(Get FASTA)	NCBI Sequence Viewer
	EDL93703	(Get FASTA)	NCBI Sequence Viewer
	Q9WU70	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_110470 ⟸ NM_030843
- Peptide Label:	isoform m
- UniProtKB:	Q9WU70 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MRKFNIRKVLDGLTAGSSSASQQQQQQQHPPGNREPEIQETLQSEHFQLCKTVRHGFPYQPSAL AFDPVQKILAVGTQTGALRLFGRPGVECYCQHDSGAAVIQLQFLINEGALVSALADDTLHLWNL RQKRPAVLHSLKFCRERVTFCHLPFQSKWLYVGTERGNIHIVNVESFTLSGYVIMWNKAIELSS KSHPGPVVHISDNPMDEGKLLIGFESGTVVLWDLKSKKADYRYTYDEAIHSVAWHHEGKQFICS HSDGTLTIWNVRSPTKPVQTITPHGKQLKDGKKPEPCKPILKVEFKTTRSGEPFIILSGGLSYD TVGRRPCLTVMHGKSTAVLEMDYSIVDFLTLCETPYPNDFQEPYAVVVLLEKDLVLIDLAQNGY PIFENPYPLSIHESPVTCCEYFADCPVDLIPALYSVGARQKRQGYSKKEWPINGGNWGLGAQSY PEIIITGHADGSIKFWDASAITLQVLYKLKTSKVFEKSRNKDDRQNTDIVDEDPYAIQIISWCP ESRMLCIAGVSAHVIIYRFSKQEVVTEVIPMLEVRLLYEINDVETPEGEQPPPLSTPVGSSTSQ PIPPQSHPSTSSSSSDGLRDNVPCLKVKNSPLKQSPGYQTELVIQLVWVGGEPPQQITSLALNS SYGLVVFGNSNGIAMVDYLQKAVLLNLSTIELYGSNDPYRREPRSPRKSRQPSGAGLCDITEGT VVPEDRCKSPTSAKMSRKLSLPTDLKPDLDVKDNSFSRSRSSSVTSIDKESREAISALHFCETF TRKADSSPSPCLWVGTTVGTAFVITLNLPLGPEQRLLQPVIVSPSGTILRLKGAILRMAFLDAA GCLMPPAYEPWTEHNVPEEKDEKEKLKKRRPVSVSPSSSQEISENQYAVICSEKQAKVISLPTQ NCAYKQNITETSFVLRGDIVALSNSVCLACFCANGHIMTFSLPSLRPLLDVYYLPLTNMRIART FCFANSGQALYLVSPTEIQRLTYSQETCENLQEMLGELFTPVETPEAPNRGFFKGLFGGGAQSL DREELFGESSSGKASRSLAQHIPGPGGIEGVKGAASGVVGELARARLALDERGQKLSDLEERTA AMMSSADSFSKHAHEMMLKYKDKKWYQF hide sequence

RefSeq Acc Id:	NP_848036 ⟸ NM_178346
- Peptide Label:	isoform s
- UniProtKB:	Q9WU70 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MRKFNIRKVLDGLTAGSSSASQQQQQQQHPPGNREPEIQETLQSEHFQLCKTVRHGFPYQPSAL AFDPVQKILAVGTQTGALRLFGRPGVECYCQHDSGAAVIQLQFLINEGALVSALADDTLHLWNL RQKRPAVLHSLKFCRERVTFCHLPFQSKWLYVGTERGNIHIVNVESFTLSGYVIMWNKAIELSS KSHPGPVVHISDNPMDEGKLLIGFESGTVVLWDLKSKKADYRYTYDEAIHSVAWHHEGKQFICS HSDGTLTIWNVRSPTKPVQTITPHGKQLKDGKKPEPCKPILKVEFKTTRSGEPFIILSGGLSYD TVGRRPCLTVMHGKSTAVLEMDYSIVDFLTLCETPYPNDFQEPYAVVVLLEKDLVLIDLAQNGY PIFENPYPLSIHESPVTCCEYFADCPVDLIPALYSVGARQKRQGYSKKEWPINGGNWGLGAQSY PEIIITGHADGSIKFWDASAITLQVLYKLKTSKVFEKSRNKDDRQNTDIVDEDPYAIQIISWCP ESRMLCIAGVSAHVIIYRFSKQEVVTEVIPMLEVRLLYEINDVETPEGEQPPPLSTPVGSSTSQ PIPPQSHPSTSSSSSDGLRDNVPCLKVKNSPLKQSPGYQTELVIQLVWVGGEPPQQITSLALNS SYGLVVFGNSNGIAMVDYLQKAVLLNLSTIELYGSNDPYRREPRSPRKSRQPSGAGLCDITEGT VVPEDRCKSPTSDVKDNSFSRSRSSSVTSIDKESREAISALHFCETFTRKADSSPSPCLWVGTT VGTAFVITLNLPLGPEQRLLQPVIVSPSGTILRLKGAILRMAFLDAAGCLMPPAYEPWTEHNVP EEKDEKEKLKKRRPVSVSPSSSQEISENQYAVICSEKQAKVISLPTQNCAYKQNITETSFVLRG DIVALSNSVCLACFCANGHIMTFSLPSLRPLLDVYYLPLTNMRIARTFCFANSGQALYLVSPTE IQRLTYSQETCENLQEMLGELFTPVETPEAPNRGFFKGLFGGGAQSLDREELFGESSSGKASRS LAQHIPGPGGIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMM LKYKDKKWYQF hide sequence

RefSeq Acc Id:	NP_848035 ⟸ NM_178345
- Peptide Label:	isoform b
- UniProtKB:	Q9Z152 (UniProtKB/Swiss-Prot), Q9WU70 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MRKFNIRKVLDGLTAGSSSASQQQQQQQHPPGNREPEIQETLQSEHFQLCKTVRHGFPYQPSAL AFDPVQKILAVGTQTGALRLFGRPGVECYCQHDSGAAVIQLQFLINEGALVSALADDTLHLWNL RQKRPAVLHSLKFCRERVTFCHLPFQSKWLYVGTERGNIHIVNVESFTLSGYVIMWNKAIELSS KSHPGPVVHISDNPMDEGKLLIGFESGTVVLWDLKSKKADYRYTYDEAIHSVAWHHEGKQFICS HSDGTLTIWNVRSPTKPVQTITPHGKQLKDGKKPEPCKPILKVEFKTTRSGEPFIILSGGLSYD TVGRRPCLTVMHGKSTAVLEMDYSIVDFLTLCETPYPNDFQEPYAVVVLLEKDLVLIDLAQNGY PIFENPYPLSIHESPVTCCEYFADCPVDLIPALYSVGARQKRQGYSKKEWPINGGNWGLGAQSY PEIIITGHADGSIKFWDASAITLQVLYKLKTSKVFEKSRNKDDRQNTDIVDEDPYAIQIISWCP ESRMLCIAGVSAHVIIYRFSKQEVVTEVIPMLEVRLLYEINDVETPEGEQPPPLSTPVGSSTSQ PIPPQSHPSTSSSSSDGLRDNVPCLKVKNSPLKQSPGYQTELVIQLVWVGGEPPQQITSLALNS SYGLVVFGNSNGIAMVDYLQKAVLLNLSTIELYGSNDPYRREPRSPRKSRQPSGAGLCDITEGT VVPEDRCKSPTSGSSSPHNSDDEQKVNNFIEKVKTQSRKFSKMVASDLAKMSRKLSLPTDLKPD LDVKDNSFSRSRSSSVTSIDKESREAISALHFCETFTRKADSSPSPCLWVGTTVGTAFVITLNL PLGPEQRLLQPVIVSPSGTILRLKGAILRMAFLDAAGCLMPPAYEPWTEHNVPEEKDEKEKLKK RRPVSVSPSSSQEISENQYAVICSEKQAKVISLPTQNCAYKQNITETSFVLRGDIVALSNSVCL ACFCANGHIMTFSLPSLRPLLDVYYLPLTNMRIARTFCFANSGQALYLVSPTEIQRLTYSQETC ENLQEMLGELFTPVETPEAPNRGFFKGLFGGGAQSLDREELFGESSSGKASRSLAQHIPGPGGI EGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMMLKYKDKKWYQF hide sequence

RefSeq Acc Id:

ENSRNOP00000039502 ⟸ ENSRNOT00000044778

RefSeq Acc Id:

ENSRNOP00000049322 ⟸ ENSRNOT00000049699

RefSeq Acc Id:

ENSRNOP00000044738 ⟸ ENSRNOT00000040559

RefSeq Acc Id:	XP_038947781 ⟸ XM_039091853
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2QLQ5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038947787 ⟸ XM_039091859
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038947799 ⟸ XM_039091871
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038947807 ⟸ XM_039091879
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038947790 ⟸ XM_039091862
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038947793 ⟸ XM_039091865
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038947802 ⟸ XM_039091874
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038947816 ⟸ XM_039091888
- Peptide Label:	isoform X8

RefSeq Acc Id:

ENSRNOP00000087436 ⟸ ENSRNOT00000094037

RefSeq Acc Id:

ENSRNOP00000092947 ⟸ ENSRNOT00000115103

RefSeq Acc Id:

ENSRNOP00000092275 ⟸ ENSRNOT00000100093

RefSeq Acc Id:

ENSRNOP00000095824 ⟸ ENSRNOT00000096129

Protein Domains

v-SNARE coiled-coil homology

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9WU70-F1-model_v2	AlphaFold	Q9WU70	1-1152	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13689488

Promoter ID:

EPDNEW_R11

Type:

single initiation site

Name:

Stxbp5_1

Description:

syntaxin binding protein 5

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	4,011,415 - 4,011,475	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:708517	AgrOrtholog
BioCyc Gene	G2FUF-62422	BioCyc
Ensembl Genes	ENSRNOG00000013351	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000039502.4	UniProtKB/TrEMBL
	ENSRNOP00000044738	ENTREZGENE
	ENSRNOP00000044738.4	UniProtKB/TrEMBL
	ENSRNOP00000049322	ENTREZGENE
	ENSRNOP00000049322.4	UniProtKB/Swiss-Prot
	ENSRNOP00000087436.1	UniProtKB/TrEMBL
	ENSRNOP00000092275.1	UniProtKB/TrEMBL
	ENSRNOP00000092947	ENTREZGENE
	ENSRNOP00000092947.1	UniProtKB/TrEMBL
	ENSRNOP00000095824.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000040559	ENTREZGENE
	ENSRNOT00000040559.6	UniProtKB/TrEMBL
	ENSRNOT00000044778.5	UniProtKB/TrEMBL
	ENSRNOT00000049699	ENTREZGENE
	ENSRNOT00000049699.7	UniProtKB/Swiss-Prot
	ENSRNOT00000094037.1	UniProtKB/TrEMBL
	ENSRNOT00000096129.1	UniProtKB/TrEMBL
	ENSRNOT00000100093.1	UniProtKB/TrEMBL
	ENSRNOT00000115103	ENTREZGENE
	ENSRNOT00000115103.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.5.110	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	2.130.10.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	Lethal2_giant	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Lgl_C_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	LLGL2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	V_SNARE_CC	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	WD40/YVTN_repeat-like_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	WD40_repeat	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	WD40_repeat_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:81022	UniProtKB/Swiss-Prot
NCBI Gene	81022	ENTREZGENE
PANTHER	LETHAL 2 GIANT LARVAE PROTEIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SYNTAXIN-BINDING PROTEIN 5	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Lgl_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	LLGL	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	WD40	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Stxbp5	PhenoGen
PRINTS	LETHAL2GIANT	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	V_SNARE	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	WD_REPEATS_1	UniProtKB/Swiss-Prot
	WD_REPEATS_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	WD_REPEATS_REGION	UniProtKB/Swiss-Prot
SMART	WD40	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SNARE fusion complex	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF50978	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I6ADC8_RAT	UniProtKB/TrEMBL
	A0A8I6AIJ8_RAT	UniProtKB/TrEMBL
	A0A8I6APW1_RAT	UniProtKB/TrEMBL
	A0A8I6GF49_RAT	UniProtKB/TrEMBL
	A0A8L2QJB5_RAT	UniProtKB/TrEMBL
	A0A8L2QLQ5	ENTREZGENE, UniProtKB/TrEMBL
	Q9WU70	ENTREZGENE
	Q9Z152	ENTREZGENE
	STXB5_RAT	UniProtKB/Swiss-Prot
UniProt Secondary	Q9WU71	UniProtKB/Swiss-Prot
	Q9Z152	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-01-27	Stxbp5	syntaxin binding protein 5	Stxbp5	syntaxin binding protein 5 (tomosyn)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-07-08	Stxbp5	syntaxin binding protein 5 (tomosyn)			Symbol and Name status set to approved	1299863	APPROVED

RGD Curation Notes

Note Type	Note	Reference

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar