Cacng7 (calcium voltage-gated channel auxiliary subunit gamma 7) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Cacng7 (calcium voltage-gated channel auxiliary subunit gamma 7) Rattus norvegicus
Analyze
Symbol: Cacng7
Name: calcium voltage-gated channel auxiliary subunit gamma 7
RGD ID: 628807
Description: Predicted to enable calcium channel regulator activity and voltage-gated calcium channel activity. Involved in positive regulation of dendrite extension and regulation of mRNA stability. Located in cerebellar mossy fiber; early endosome; and neuronal cell body. Part of AMPA glutamate receptor complex. Is active in glutamatergic synapse and postsynaptic density membrane. Orthologous to human CACNG7 (calcium voltage-gated channel auxiliary subunit gamma 7); PARTICIPATES IN arrhythmogenic right ventricular cardiomyopathy pathway; dilated cardiomyopathy pathway; hypertrophic cardiomyopathy pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; bis(2-ethylhexyl) phthalate.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: calcium channel, voltage-dependent, gamma subunit 7; neuronal voltage-gated calcium channel gamma-7 subunit; TARP gamma-7; transmembrane AMPAR regulatory protein gamma-7; voltage-dependent calcium channel gamma-7 subunit
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8174,715,483 - 74,746,669 (-)NCBIGRCr8
mRatBN7.2165,800,059 - 65,831,246 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl165,800,355 - 65,831,006 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx171,249,507 - 71,275,759 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0179,672,501 - 79,698,749 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0173,005,758 - 73,032,036 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0164,374,547 - 64,405,380 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl164,374,603 - 64,405,149 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0163,367,593 - 63,397,433 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4164,114,233 - 64,140,485 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1164,191,698 - 64,218,596 (-)NCBI
Celera163,526,185 - 63,552,433 (-)NCBICelera
Cytogenetic Map1q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Calcium channel gamma subunits provide insights into the evolution of this gene family. Chu PJ, etal., Gene 2001 Dec 12;280(1-2):37-48.
2. The stargazin-related protein gamma 7 interacts with the mRNA-binding protein heterogeneous nuclear ribonucleoprotein A2 and regulates the stability of specific mRNAs, including CaV2.2. Ferron L, etal., J Neurosci. 2008 Oct 15;28(42):10604-17. doi: 10.1523/JNEUROSCI.2709-08.2008.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. New transmembrane AMPA receptor regulatory protein isoform, gamma-7, differentially regulates AMPA receptors. Kato AS, etal., J Neurosci. 2007 May 2;27(18):4969-77. doi: 10.1523/JNEUROSCI.5561-06.2007.
5. AMPA receptor subunit-specific regulation by a distinct family of type II TARPs. Kato AS, etal., Neuron. 2008 Sep 25;59(6):986-96. doi: 10.1016/j.neuron.2008.07.034.
6. Distribution of transmembrane AMPA receptor regulatory protein (TARP) isoforms in the rat spinal cord. Larsson M, etal., Neuroscience. 2013 Sep 17;248:180-93. doi: 10.1016/j.neuroscience.2013.05.060. Epub 2013 Jun 7.
7. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
8. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
9. GOA pipeline RGD automated data pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Functional proteomics identify cornichon proteins as auxiliary subunits of AMPA receptors. Schwenk J, etal., Science. 2009 Mar 6;323(5919):1313-9. doi: 10.1126/science.1167852.
13. Selective regulation of long-form calcium-permeable AMPA receptors by an atypical TARP, gamma-5. Soto D, etal., Nat Neurosci. 2009 Mar;12(3):277-85. doi: 10.1038/nn.2266. Epub 2009 Feb 22.
14. Stargazin-related protein ¿7 is associated with signalling endosomes in superior cervical ganglion neurons and modulates neurite outgrowth. Waithe D, etal., J Cell Sci. 2011 Jun 15;124(Pt 12):2049-57. doi: 10.1242/jcs.084988. Epub 2011 May 24.
Additional References at PubMed
PMID:21127204   PMID:21172611   PMID:23872597  


Genomics

Comparative Map Data
Cacng7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8174,715,483 - 74,746,669 (-)NCBIGRCr8
mRatBN7.2165,800,059 - 65,831,246 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl165,800,355 - 65,831,006 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx171,249,507 - 71,275,759 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0179,672,501 - 79,698,749 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0173,005,758 - 73,032,036 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0164,374,547 - 64,405,380 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl164,374,603 - 64,405,149 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0163,367,593 - 63,397,433 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4164,114,233 - 64,140,485 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1164,191,698 - 64,218,596 (-)NCBI
Celera163,526,185 - 63,552,433 (-)NCBICelera
Cytogenetic Map1q12NCBI
CACNG7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381953,909,278 - 53,943,950 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1953,909,278 - 53,943,950 (+)EnsemblGRCh38hg38GRCh38
GRCh371954,412,532 - 54,447,204 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361959,107,883 - 59,138,080 (+)NCBINCBI36Build 36hg18NCBI36
Build 341959,107,882 - 59,138,080NCBI
Celera1951,457,105 - 51,485,939 (+)NCBICelera
Cytogenetic Map19q13.42NCBI
HuRef1950,735,318 - 50,764,119 (+)NCBIHuRef
CHM1_11954,417,785 - 54,448,738 (+)NCBICHM1_1
T2T-CHM13v2.01956,988,984 - 57,022,442 (+)NCBIT2T-CHM13v2.0
Cacng7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3973,381,341 - 3,416,737 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl73,381,471 - 3,416,737 (+)EnsemblGRCm39 Ensembl
GRCm3873,332,027 - 3,368,221 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl73,332,955 - 3,368,221 (+)EnsemblGRCm38mm10GRCm38
MGSCv3773,336,685 - 3,366,537 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera73,287,413 - 3,318,058 (+)NCBICelera
Cytogenetic Map7A1NCBI
cM Map71.95NCBI
Cacng7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955604241,170 - 260,594 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955604242,627 - 260,594 (-)NCBIChiLan1.0ChiLan1.0
CACNG7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22059,921,106 - 59,952,201 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11961,843,010 - 61,873,991 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01950,849,785 - 50,880,904 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11959,698,941 - 59,726,447 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1959,701,451 - 59,724,809 (+)Ensemblpanpan1.1panPan2
CACNG7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11103,276,743 - 103,293,393 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1103,277,662 - 103,293,995 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1103,338,506 - 103,359,764 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01103,926,808 - 103,948,291 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11103,559,486 - 103,580,755 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01103,321,255 - 103,342,500 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01104,040,180 - 104,061,457 (-)NCBIUU_Cfam_GSD_1.0
Cacng7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093492,811,484 - 2,830,589 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936994108,213 - 126,435 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936994107,973 - 126,317 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CACNG7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl656,188,168 - 56,212,505 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1656,188,362 - 56,211,655 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2653,003,529 - 53,027,058 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CACNG7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1646,602,072 - 46,631,975 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl646,605,245 - 46,632,416 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607326,679,331 - 26,709,584 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cacng7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248322,529,705 - 2,546,908 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248322,529,708 - 2,546,916 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cacng7
104 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:35
Count of miRNA genes:32
Interacting mature miRNAs:35
Transcripts:ENSRNOT00000019683
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1300167Hrtrt2Heart rate QTL 24.35heart pumping trait (VT:2000009)heart rate (CMO:0000002)11148131275088344Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11148131282174945Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11148131282174945Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11148131282174945Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
1357400Bw62Body weight QTL624.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)12234064767340647Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)12887978078430678Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13273727390665040Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)13344984878449848Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)13344984878449848Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)13483685879836858Rat
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)13523959878430678Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)13523959878430678Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)143284731118944897Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14333300288333002Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14580314078430678Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14936146582174945Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)15386304190532583Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)15389511782174945Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15389511782174945Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)15673266898773277Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)156949932101949932Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
1300121Hrtrt1Heart rate QTL 13.7heart pumping trait (VT:2000009)heart rate (CMO:0000002)165789093115540829Rat

Markers in Region
D1Got435  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2165,803,682 - 65,803,867 (+)MAPPERmRatBN7.2
Rnor_6.0164,377,933 - 64,378,117NCBIRnor6.0
Rnor_5.0163,369,989 - 63,370,173UniSTSRnor5.0
RGSC_v3.4164,116,561 - 64,116,745UniSTSRGSC3.4
Celera163,528,513 - 63,528,697UniSTS
Cytogenetic Map1q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 74 10
Low 3 31 12 6 6 6 7 12 28 1 6
Below cutoff 12 10 6 5 6 2 2 9 3 9 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000089944   ⟹   ENSRNOP00000069074
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl165,800,355 - 65,831,006 (-)Ensembl
Rnor_6.0 Ensembl164,374,603 - 64,405,149 (-)Ensembl
RefSeq Acc Id: NM_080695   ⟹   NP_542426
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8174,715,483 - 74,746,669 (-)NCBI
mRatBN7.2165,800,059 - 65,831,246 (-)NCBI
Rnor_6.0164,375,605 - 64,401,857 (-)NCBI
Rnor_5.0163,367,593 - 63,397,433 (-)NCBI
RGSC_v3.4164,114,233 - 64,140,485 (-)RGD
Celera163,526,185 - 63,552,433 (-)RGD
Sequence:
RefSeq Acc Id: XM_039082037   ⟹   XP_038937965
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8174,718,618 - 74,746,587 (-)NCBI
mRatBN7.2165,803,194 - 65,831,165 (-)NCBI
Protein Sequences
Protein RefSeqs NP_542426 (Get FASTA)   NCBI Sequence Viewer  
  XP_038937965 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAL50040 (Get FASTA)   NCBI Sequence Viewer  
  EDL84947 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000069074
  ENSRNOP00000069074.1
  ENSRNOP00055041336
  ENSRNOP00060035944
  ENSRNOP00065043530
GenBank Protein P62957 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_542426   ⟸   NM_080695
- UniProtKB: P62957 (UniProtKB/Swiss-Prot),   A6KS40 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000069074   ⟸   ENSRNOT00000089944
RefSeq Acc Id: XP_038937965   ⟸   XM_039082037
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P62957-F1-model_v2 AlphaFold P62957 1-275 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:628807 AgrOrtholog
BioCyc Gene G2FUF-61017 BioCyc
Ensembl Genes ENSRNOG00000056257 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00055029013 UniProtKB/Swiss-Prot
  ENSRNOG00060025080 UniProtKB/Swiss-Prot
  ENSRNOG00065030756 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000089944 ENTREZGENE
  ENSRNOT00000089944.2 UniProtKB/Swiss-Prot
  ENSRNOT00055050231 UniProtKB/Swiss-Prot
  ENSRNOT00060043392 UniProtKB/Swiss-Prot
  ENSRNOT00065053003 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.140.150 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro PMP22/EMP/MP20/Claudin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VDCC_g7su UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VDCC_gsu UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:140728 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 140728 ENTREZGENE
PANTHER PTHR12107:SF12 UniProtKB/Swiss-Prot
  VOLTAGE-DEPENDENT CALCIUM CHANNEL GAMMA SUBUNIT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VOLTAGE-DEPENDENT CALCIUM CHANNEL GAMMA-7 SUBUNIT UniProtKB/TrEMBL
Pfam Claudin_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cacng7 PhenoGen
PRINTS VDCCGAMMA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VDCCGAMMA7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000056257 RatGTEx
  ENSRNOG00055029013 RatGTEx
  ENSRNOG00060025080 RatGTEx
  ENSRNOG00065030756 RatGTEx
UniProt A6KS40 ENTREZGENE, UniProtKB/TrEMBL
  CCG7_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q8VBX3 UniProtKB/Swiss-Prot
  Q8WXS6 UniProtKB/Swiss-Prot
  Q9BXT1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-11 Cacng7  calcium voltage-gated channel auxiliary subunit gamma 7  Cacng7  calcium channel, voltage-dependent, gamma subunit 7  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Cacng7  calcium channel, voltage-dependent, gamma subunit 7    voltage-dependent calcium channel gamma-7 subunit  Name updated 1299863 APPROVED
2003-02-27 Cacng7  voltage-dependent calcium channel gamma-7 subunit      Symbol and Name status set to provisional 70820 PROVISIONAL