Cnn1 (calponin 1) - Rat Genome Database

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Gene: Cnn1 (calponin 1) Rattus norvegicus
Analyze
Symbol: Cnn1
Name: calponin 1
RGD ID: 621883
Description: Enables actin binding activity. Predicted to be involved in actin filament organization and negative regulation of vascular associated smooth muscle cell proliferation. Predicted to be located in cytoskeleton. Predicted to be active in actin cytoskeleton. Orthologous to human CNN1 (calponin 1); INTERACTS WITH 1,2,4-trimethylbenzene; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: basic calponin; calponin 1 smooth muscle; calponin 1, basic, smooth muscle; calponin 1, smooth muscle; calponin H1, smooth muscle; calponin-1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8828,908,437 - 28,917,099 (+)NCBIGRCr8
mRatBN7.2820,632,434 - 20,641,097 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl820,632,338 - 20,641,098 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx824,661,337 - 24,670,331 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0822,958,475 - 22,967,472 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0820,861,968 - 20,870,646 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0823,113,083 - 23,121,748 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl823,113,048 - 23,121,761 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0823,167,867 - 23,176,532 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4821,210,524 - 21,221,024 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1821,210,526 - 21,221,024 (+)NCBI
Celera822,022,653 - 22,031,180 (+)NCBICelera
Cytogenetic Map8q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2,4-trimethylbenzene  (EXP)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
25-hydroxycholesterol  (EXP)
3-\{1-[3-(dimethylamino)propyl]-1H-indol-3-yl\}-4-(1H-indol-3-yl)-1H-pyrrole-2,5-dione  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
9-cis-retinoic acid  (EXP)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
amphibole asbestos  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
buta-1,3-diene  (ISO)
butanal  (ISO)
C60 fullerene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
cisplatin  (EXP,ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
D-glucose  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (EXP,ISO)
diethylstilbestrol  (EXP)
diquat  (ISO)
diuron  (EXP)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
folpet  (ISO)
fucoxanthin  (ISO)
fulvestrant  (ISO)
genistein  (ISO)
glucose  (ISO)
graphene oxide  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
isoflavones  (EXP)
L-ascorbic acid  (EXP,ISO)
leflunomide  (ISO)
methylmercury chloride  (ISO)
Muraglitazar  (EXP)
nickel atom  (ISO)
nickel sulfate  (ISO)
niclosamide  (ISO)
nitrofen  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
pentanal  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
phenylephrine  (EXP)
PhIP  (EXP)
phorbol 13-acetate 12-myristate  (ISO)
pioglitazone  (ISO)
pravastatin  (EXP,ISO)
progesterone  (ISO)
propanal  (ISO)
quercetin  (EXP)
resveratrol  (ISO)
SB 203580  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sulforaphane  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
titanium dioxide  (ISO)
triadimefon  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
troglitazone  (EXP)
undecane  (EXP)
valproic acid  (ISO)
vitamin E  (ISO)
vitamin K  (EXP)
warfarin  (EXP)
XL147  (ISO)
zaragozic acid A  (EXP,ISO)
zinc atom  (EXP)
zinc(0)  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. The molecular basis for the autoregulation of calponin by isoform-specific C-terminal tail sequences. Burgstaller G, etal., J Cell Sci 2002 May 15;115(Pt 10):2021-9.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. cDNA cloning and mRNA expression of calponin and SM22 in rat aorta smooth muscle cells. Nishida W, etal., Gene 1993 Aug 25;130(2):297-302.
7. GOA pipeline RGD automated data pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Isolation of gene markers of differentiated and proliferating vascular smooth muscle cells. Shanahan CM, etal., Circ Res 1993 Jul;73(1):193-204.
10. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:8616889   PMID:12716472   PMID:14620880   PMID:15489334   PMID:16428310   PMID:17078028   PMID:17487264   PMID:18566890   PMID:20181831   PMID:21423176   PMID:22049796   PMID:22199370  
PMID:23557080   PMID:25108144   PMID:26315405   PMID:27531060   PMID:28374979   PMID:28457943   PMID:30339939  


Genomics

Comparative Map Data
Cnn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8828,908,437 - 28,917,099 (+)NCBIGRCr8
mRatBN7.2820,632,434 - 20,641,097 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl820,632,338 - 20,641,098 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx824,661,337 - 24,670,331 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0822,958,475 - 22,967,472 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0820,861,968 - 20,870,646 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0823,113,083 - 23,121,748 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl823,113,048 - 23,121,761 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0823,167,867 - 23,176,532 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4821,210,524 - 21,221,024 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1821,210,526 - 21,221,024 (+)NCBI
Celera822,022,653 - 22,031,180 (+)NCBICelera
Cytogenetic Map8q13NCBI
CNN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381911,538,851 - 11,550,323 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1911,538,767 - 11,550,323 (+)EnsemblGRCh38hg38GRCh38
GRCh371911,649,666 - 11,661,138 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361911,510,579 - 11,522,138 (+)NCBINCBI36Build 36hg18NCBI36
Build 341911,510,578 - 11,522,138NCBI
Celera1911,544,322 - 11,555,881 (+)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef1911,224,160 - 11,235,718 (+)NCBIHuRef
CHM1_11911,649,645 - 11,661,204 (+)NCBICHM1_1
T2T-CHM13v2.01911,666,362 - 11,677,836 (+)NCBIT2T-CHM13v2.0
Cnn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39922,010,501 - 22,020,517 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl922,010,512 - 22,020,926 (+)EnsemblGRCm39 Ensembl
GRCm38922,099,221 - 22,109,221 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl922,099,216 - 22,109,630 (+)EnsemblGRCm38mm10GRCm38
MGSCv37921,903,697 - 21,913,665 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36921,849,683 - 21,860,032 (+)NCBIMGSCv36mm8
Celera919,368,227 - 19,378,195 (+)NCBICelera
Cytogenetic Map9A3NCBI
cM Map98.3NCBI
Cnn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554952,394,724 - 2,401,778 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554952,394,724 - 2,401,236 (+)NCBIChiLan1.0ChiLan1.0
CNN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22016,451,391 - 16,462,914 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11915,450,099 - 15,461,943 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01911,084,862 - 11,096,374 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11911,796,523 - 11,807,680 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1911,796,523 - 11,807,680 (+)Ensemblpanpan1.1panPan2
CNN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12049,830,859 - 49,837,432 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2049,831,265 - 49,837,385 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2049,701,977 - 49,708,548 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02050,349,147 - 50,355,718 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2050,349,149 - 50,355,683 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12049,559,474 - 49,566,041 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02049,985,630 - 49,992,192 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02050,228,604 - 50,235,177 (-)NCBIUU_Cfam_GSD_1.0
Cnn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118208,775,112 - 208,784,025 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366591,572,839 - 1,579,613 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366591,572,839 - 1,579,594 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CNN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl270,183,364 - 70,190,752 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1270,183,370 - 70,190,756 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2270,536,430 - 70,544,016 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CNN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1610,461,140 - 10,470,813 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660749,379,569 - 9,390,583 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cnn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248283,283,817 - 3,290,401 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248283,283,830 - 3,290,274 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cnn1
32 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:254
Count of miRNA genes:153
Interacting mature miRNAs:180
Transcripts:ENSRNOT00000029577
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590084Insglur5Insulin/glucose ratio QTL 518.540.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)8124597739Rat
2317882Alcrsp24Alcohol response QTL 243.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)8125902202Rat
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)8209764047097640Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)8209764047097640Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)8209764047097640Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)8209764047097640Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)8470581049705810Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)8470581049705810Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)8470581049705810Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)8767057852670578Rat
1354595Despr4Despair related QTL 42.160.0036locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)8768895552688955Rat
1354627Despr14Despair related QTL 140.0056locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)8768895552688955Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)8873663553736635Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)8873663553736635Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)8971222053356647Rat
1357398Slep3Serum leptin concentration QTL 33.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
2302367Slep5Serum leptin concentration QTL 53.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
1558646Swd5Spike wave discharge measurement QTL 53.450.00036brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)81490675159906751Rat
61373Mcs4Mammary carcinoma susceptibility QTL 41.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)81629044461290444Rat
631271Lecl1Lens clarity QTL 10.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)81898416884531599Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)81933115293965294Rat

Markers in Region
RH131049  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2820,640,686 - 20,640,898 (+)MAPPERmRatBN7.2
Rnor_6.0823,121,338 - 23,121,549NCBIRnor6.0
Rnor_5.0823,176,122 - 23,176,333UniSTSRnor5.0
RGSC_v3.4821,220,614 - 21,220,825UniSTSRGSC3.4
Celera822,030,770 - 22,030,981UniSTS
RH 3.4 Map8181.7UniSTS
Cytogenetic Map8q13UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 28 8 28 11
Low 15 37 21 19 21 8 10 35 27 13 8
Below cutoff 20 20 20 1 37

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000029577   ⟹   ENSRNOP00000029782
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl820,632,410 - 20,641,098 (+)Ensembl
Rnor_6.0 Ensembl823,113,048 - 23,121,761 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000096004   ⟹   ENSRNOP00000085657
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl820,632,338 - 20,640,334 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000106276   ⟹   ENSRNOP00000080119
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl820,632,415 - 20,641,098 (+)Ensembl
RefSeq Acc Id: NM_031747   ⟹   NP_113935
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,908,437 - 28,917,099 (+)NCBI
mRatBN7.2820,632,434 - 20,641,097 (+)NCBI
Rnor_6.0823,113,083 - 23,121,748 (+)NCBI
Rnor_5.0823,167,867 - 23,176,532 (+)NCBI
RGSC_v3.4821,210,524 - 21,221,024 (+)RGD
Celera822,022,653 - 22,031,180 (+)RGD
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_113935   ⟸   NM_031747
- UniProtKB: Q08290 (UniProtKB/Swiss-Prot),   A6JNY4 (UniProtKB/TrEMBL),   A0A8L2QH34 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000029782   ⟸   ENSRNOT00000029577
RefSeq Acc Id: ENSRNOP00000080119   ⟸   ENSRNOT00000106276
RefSeq Acc Id: ENSRNOP00000085657   ⟸   ENSRNOT00000096004
Protein Domains
Calponin-homology (CH)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q08290-F1-model_v2 AlphaFold Q08290 1-297 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695805
Promoter ID:EPDNEW_R6328
Type:single initiation site
Name:Cnn1_1
Description:calponin 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0823,113,064 - 23,113,124EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621883 AgrOrtholog
BioCyc Gene G2FUF-31389 BioCyc
Ensembl Genes ENSRNOG00000027736 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000029577.7 UniProtKB/TrEMBL
  ENSRNOT00000096004.1 UniProtKB/TrEMBL
  ENSRNOT00000106276 ENTREZGENE
  ENSRNOT00000106276.1 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.418.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:5598777 IMAGE-MGC_LOAD
InterPro Calponin/LIMCH1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Calponin_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CH-domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CH_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM22_calponin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:65204 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72389 IMAGE-MGC_LOAD
NCBI Gene 65204 ENTREZGENE
PANTHER CALPONIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CALPONIN UniProtKB/TrEMBL
  CALPONIN-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Calponin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00307 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cnn1 PhenoGen
PRINTS CALPONIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM22CALPONIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CALPONIN_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CALPONIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PS50021 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000027736 RatGTEx
SMART SM00033 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47576 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6GD56_RAT UniProtKB/TrEMBL
  A0A8L2QH34 ENTREZGENE, UniProtKB/TrEMBL
  A6JNY3_RAT UniProtKB/TrEMBL
  A6JNY4 ENTREZGENE, UniProtKB/TrEMBL
  A6JNY5_RAT UniProtKB/TrEMBL
  A6JNY6_RAT UniProtKB/TrEMBL
  CNN1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-27 Cnn1  calponin 1  Cnn1  calponin 1, basic, smooth muscle  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-09 Cnn1  calponin 1, basic, smooth muscle  Cnn1  calponin 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-02-26 Cnn1  calponin 1    Calponin 1  Symbol and Name status set to approved 625702 APPROVED
2002-08-07 Cnn1        Symbol and Name status set to provisional 70820 PROVISIONAL