Bpnt1 (3'(2'), 5'-bisphosphate nucleotidase 1)

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Gene: Bpnt1 (3'(2'), 5'-bisphosphate nucleotidase 1) Rattus norvegicus

Analyze

Symbol:

Bpnt1

Name:

3'(2'), 5'-bisphosphate nucleotidase 1

RGD ID:

621833

Description:

Enables 3'(2'),5'-bisphosphate nucleotidase activity; inositol-1,4-bisphosphate 1-phosphatase activity; and magnesium ion binding activity. Predicted to be involved in phosphatidylinositol phosphate biosynthetic process. Orthologous to human BPNT1 (3'(2'), 5'-bisphosphate nucleotidase 1); PARTICIPATES IN sulfite oxidase deficiency pathway; sulfur metabolic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

3'(2'),5'-bisphosphate nucleotidase; 3'(2'),5'-bisphosphate nucleotidase 1; 3'(2')5'-bisphosphate nucleotidase; 3(2),5-bisphosphate nucleotidase; 3(2)5-bisphosphate nucleotidase; bisphosphate 3'-nucleotidase 1; MGC93112; PAP-inositol 1,4-phosphatase; PAP-inositol-1,4-phosphatase; PIP; Sal3; scHAL2 analogous 3

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	BPNT1 (3'(2'), 5'-bisphosphate nucleotidase 1)	HGNC	Ensembl, HomoloGene, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Bpnt1 (3'(2'), 5'-bisphosphate nucleotidase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Bpnt1 (3'(2'), 5'-bisphosphate nucleotidase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	BPNT1 (3'(2'), 5'-bisphosphate nucleotidase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	BPNT1 (3'(2'), 5'-bisphosphate nucleotidase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Bpnt1 (3'(2'), 5'-bisphosphate nucleotidase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	BPNT1 (3'(2'), 5'-bisphosphate nucleotidase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	BPNT1 (3'(2'), 5'-bisphosphate nucleotidase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Bpnt1 (3'(2'), 5'-bisphosphate nucleotidase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	BPNT2 (3'(2'), 5'-bisphosphate nucleotidase 2)	HGNC	Inparanoid
Alliance orthologs ³
Homo sapiens (human):	BPNT1 (3'(2'), 5'-bisphosphate nucleotidase 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Bpnt1 (3'(2'), 5'-bisphosphate nucleotidase 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	bpnt1 (bisphosphate nucleotidase 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG7789	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	bpnt-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	bpnt1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	13	96,865,634 - 96,893,506 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	96,868,580 - 96,893,503 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	99,367,724 - 99,392,688 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	13	100,773,702 - 100,798,609 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	13	97,949,983 - 97,974,947 (+)	NCBI	Rnor_WKY
Rnor_6.0	13	103,268,045 - 103,292,848 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	103,268,068 - 103,292,854 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	107,941,070 - 107,965,562 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	101,340,544 - 101,367,549 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	101,540,167 - 101,556,592 (+)	NCBI
Celera	13	96,381,982 - 96,406,864 (+)	NCBI		Celera
Cytogenetic Map	13	q26	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Chemical and Drug Induced Liver Injury (ISO)

gastrointestinal stromal tumor (ISO)

genetic disease (ISO)

Loeys-Dietz syndrome 4 (ISO)

Martsolf Syndrome (ISO)

parathyroid carcinoma (ISO)

Usher syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,1-dichloroethene (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

2-hydroxypropanoic acid (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3H-1,2-dithiole-3-thione (EXP)

4-amino-2,6-dinitrotoluene (EXP)

ammonium chloride (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (ISO)

Benzo[ghi]perylene (ISO)

bisphenol A (EXP,ISO)

captan (ISO)

cisplatin (ISO)

cyclosporin A (ISO)

dicrotophos (ISO)

enzyme inhibitor (ISO)

flutamide (EXP)

folic acid (EXP,ISO)

folpet (ISO)

gentamycin (EXP)

hydroxyurea (ISO)

ivermectin (ISO)

leflunomide (EXP)

methidathion (ISO)

methylmercury chloride (ISO)

N-methyl-N-nitrosourea (ISO)

nefazodone (EXP)

nickel atom (ISO)

paracetamol (EXP,ISO)

pentachlorophenol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (ISO)

propiconazole (ISO)

rac-lactic acid (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium dichromate (ISO)

sodium fluoride (ISO)

sunitinib (ISO)

T-2 toxin (EXP)

tetrachloromethane (EXP)

trovafloxacin (EXP)

valproic acid (ISO)

vancomycin (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

phosphatidylinositol phosphate biosynthetic process (IEA)

Molecular Function

3'(2'),5'-bisphosphate nucleotidase activity (IBA,IDA,ISO)

inositol-1,4-bisphosphate 1-phosphatase activity (IDA)

magnesium ion binding (IDA)

metal ion binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

sulfite oxidase deficiency pathway (ISO)

sulfur metabolic pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	A novel mammalian lithium-sensitive enzyme with a dual enzymatic activity, 3'-phosphoadenosine 5'-phosphate phosphatase and inositol-polyphosphate 1-phosphatase.	Lopez-Coronado JM, etal., J Biol Chem 1999 Jun 4;274(23):16034-9.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
5.	Crystal structure of an enzyme displaying both inositol-polyphosphate-1-phosphatase and 3'-phosphoadenosine-5'-phosphate phosphatase activities: a novel target of lithium therapy.	Patel S, etal., J Mol Biol 2002 Jan 25;315(4):677-85.
6.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
7.	SMPDB Annotation Import Pipeline	Pipeline to import SMPDB annotations from SMPDB into RGD
8.	GOA pipeline	RGD automated data pipeline
9.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
11.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:10224133	PMID:12477932	PMID:15489334	PMID:23376485

Genomics

Comparative Map Data

Bpnt1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	13	96,865,634 - 96,893,506 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	96,868,580 - 96,893,503 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	99,367,724 - 99,392,688 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	13	100,773,702 - 100,798,609 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	13	97,949,983 - 97,974,947 (+)	NCBI	Rnor_WKY
Rnor_6.0	13	103,268,045 - 103,292,848 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	103,268,068 - 103,292,854 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	107,941,070 - 107,965,562 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	101,340,544 - 101,367,549 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	101,540,167 - 101,556,592 (+)	NCBI
Celera	13	96,381,982 - 96,406,864 (+)	NCBI		Celera
Cytogenetic Map	13	q26	NCBI

BPNT1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	220,057,482 - 220,089,788 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	1	220,057,482 - 220,090,462 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	220,230,824 - 220,263,130 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	218,297,447 - 218,329,814 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	216,619,220 - 216,651,579	NCBI
Celera	1	193,450,034 - 193,482,399 (-)	NCBI		Celera
Cytogenetic Map	1	q41	NCBI
HuRef	1	190,905,457 - 190,937,542 (-)	NCBI		HuRef
CHM1_1	1	221,503,635 - 221,536,002 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	219,296,762 - 219,329,190 (-)	NCBI		T2T-CHM13v2.0

Bpnt1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	185,061,619 - 185,089,974 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	185,064,346 - 185,089,974 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	185,329,428 - 185,357,777 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	185,332,149 - 185,357,777 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	187,156,038 - 187,181,648 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	187,032,947 - 187,058,557 (+)	NCBI		MGSCv36	mm8
Celera	1	192,281,814 - 192,307,391 (+)	NCBI		Celera
Cytogenetic Map	1	H5	NCBI

Bpnt1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955520	3,524,684 - 3,544,666 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955520	3,521,096 - 3,543,255 (+)	NCBI	ChiLan1.0	ChiLan1.0

BPNT1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	1	29,285,102 - 29,319,100 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	195,629,262 - 195,663,144 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	200,667,016 - 200,699,790 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	200,667,016 - 200,699,790 (-)	Ensembl	panpan1.1		panPan2

BPNT1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	38	14,834,642 - 14,857,242 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	38	14,834,643 - 14,857,227 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	38	14,877,148 - 14,899,802 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	38	14,869,796 - 14,892,460 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	38	14,867,722 - 14,892,448 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	38	14,880,647 - 14,903,284 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	38	15,225,675 - 15,248,728 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	38	15,515,028 - 15,537,177 (-)	NCBI		UU_Cfam_GSD_1.0

Bpnt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	56,865,682 - 56,890,277 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936650	2,113,649 - 2,138,934 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936650	2,113,933 - 2,138,487 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BPNT1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	9,659,487 - 9,683,912 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	10	9,659,876 - 9,684,115 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	11,741,839 - 11,765,917 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

BPNT1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	9,489,479 - 9,518,936 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	9,490,763 - 9,519,721 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	9,794,651 - 9,825,120 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Bpnt1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624835	3,704,664 - 3,718,129 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624835	3,704,455 - 3,722,825 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Bpnt1
124 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	137
Count of miRNA genes:	109
Interacting mature miRNAs:	118
Transcripts:	ENSRNOT00000003249
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	1	101056920	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	1	101056920	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	101056920	Rat
1581570	Eae17	Experimental allergic encephalomyelitis QTL 17	4.1		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	13	8897350	101631289	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	20605871	101339738	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	30395351	101056920	Rat
1641901	Alcrsp6	Alcohol response QTL 6			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	13	52362171	97362171	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	56056920	101056920	Rat
12879475	Bp400	Blood pressure QTL 400			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	61825626	106807694	Rat
2293702	Bss34	Bone structure and strength QTL 34	4.61	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	13	65103704	106807694	Rat
2293687	Bss26	Bone structure and strength QTL 26	4.6	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	13	65103704	106807694	Rat
8655959	Pur32	Proteinuria QTL 32	8.4		urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	74023918	97213863	Rat
2293341	Glom15	Glomerulus QTL 15	9.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	13	74862117	101339893	Rat
4889606	Gluco63	Glucose level QTL 63	2.86	0.003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	80753256	106807694	Rat

Markers in Region

RH129031

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	96,893,250 - 96,893,400 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	103,292,593 - 103,292,742	NCBI	Rnor6.0
Rnor_5.0	13	107,965,307 - 107,965,456	UniSTS	Rnor5.0
RGSC_v3.4	13	101,367,294 - 101,367,443	UniSTS	RGSC3.4
Celera	13	96,406,609 - 96,406,758	UniSTS
RH 3.4 Map	13	656.1	UniSTS
Cytogenetic Map	13	q26	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	57	41	19	41	8	10	74	35	41	11	8
Low								1
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_171990	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250429	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250430	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250431	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091064	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AJ000347	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC085692	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214355	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000245	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000003249 ⟹ ENSRNOP00000003249

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	96,868,580 - 96,893,501 (+)	Ensembl
Rnor_6.0 Ensembl	13	103,268,088 - 103,292,845 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000088921 ⟹ ENSRNOP00000071594

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	96,868,580 - 96,893,501 (+)	Ensembl
Rnor_6.0 Ensembl	13	103,268,068 - 103,292,854 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000096481 ⟹ ENSRNOP00000080410

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	96,877,092 - 96,893,503 (+)	Ensembl

RefSeq Acc Id:

NM_171990 ⟹ NP_741987

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	96,868,603 - 96,893,506 (+)	NCBI
Rnor_6.0	13	103,268,088 - 103,292,848 (+)	NCBI
Rnor_5.0	13	107,941,070 - 107,965,562 (+)	NCBI
RGSC_v3.4	13	101,340,544 - 101,367,549 (+)	RGD
Celera	13	96,381,982 - 96,406,864 (+)	RGD

Sequence:

show sequence

CTGGAGGCAGCCTGTTCTGTGACAGCGAGCCACCAGGCCGGACATCGCTTAGGGGACGCCAGGC
TGACTGTTGATCATGGCTTCCAGCCACAATGTGTTGATGCGGCTGGTAGCCTCCGCATACTCTA
TCGCTCAGAAGGCAGGAACCATCGTCAGGTGTGTCATCGCTGAAGGAGACCTGGGCATCGTGCA
GAAGACCTCAGCCACTGACCTGCAGACCAAAGCAGACCGCATGGTACAGATGAGCATATGCTCT
TCCCTGTCCCGGAAATTCCCGAAGCTGACGATCATCGGGGAAGAGGACCTGCCTCCTGGAGAAG
TGGATCAAGAACTGATTGAAGACGGGCAGTCGGAGGAGATCCTGAAGCAGCCGTGCCCATCGCA
GTACAGTGCAATCAAGGAGGAAGACCTTGTGGTTTGGGTTGACCCCGTAGATGGTACCAAGGAA
TACACTGAAGGTCTTCTTGACAATGTAACAGTGCTCATTGGGATTGCTTATGAAGGAAAGGCCA
TCGCAGGCATCATCAACCAGCCATATTACAACTACCAGGCAGGACCGGACGCCGTGCTGGGCAG
GACCATCTGGGGAGTCCTGGGTTTGGGTGCCTTTGGGTTTCAGCTGAAAGAAGCCCCTGCTGGG
AAGCACATCATCACCACCACCAGATCCCATAGCAACAAGCTGGTCACAGACTGCATTGCAGCCA
TGAACCCTGACAACGTGCTGCGAGTGGGAGGAGCAGGAAACAAGATTATCCAGCTGATTGAAGG
CAAAGCCTCTGCTTATGTATTTGCAAGTCCTGGATGTAAGAAATGGGATACTTGTGCCCCAGAA
GTTATCTTACATGCTGTAGGAGGGAAGTTGACAGACATCCACGGGAATCCCCTGCAGTACGACA
AGGAGGTGAAACACATGAACTCTGCTGGAGTTCTGGCTGCACTGCGGAATTATGAGTACTATGC
AAGCCGCGTACCAGAGTCTGTCAAAAGTGCACTCATTCCCTGAAGGGGTCTCACTTACTTACCC
AGGGGCCTCGGTTCAAAGTAACATATCTTAGAACTGATTAACTGATTGAACAATTAGAACTCCA
CTTGCATTCATCATTGATCAATGATTTATTAGTAGGTAGGGATAGAAGATGGAATTAAAGAATT
GTCTTAGGTATATAACACAATTGTCATTTCTCCTGCCTAAAAAAAAAAAATTAGCCAAGTGGTA
GCACTTATGACAGTCATGGCCATTCCAGTGGCTGAGCTAGGAGGGTTGCTTGAGCCCAGGGCCC
CGAGACTAGCCTCCTTCACATAGCAAGACATAGCCCAAAAACAAAGAAGAAAAACAAAAAAGGA
ATTTACACTTGATCTTAGCCAAAAGGCCGAGAAGCGATCAAAAAAGGAATTTAGTTTTACCAAT
TAGCTAACTAGACCTGTTTTGTTGTTGATGTTGTTGTTGTTTGGTTTTTTGAGACAGGGTTTCT
CTGTGCAGTCCTGGCTGTACTGAAATTTACTTAGTAGACAAAGCTGGCCTTGAGCTCAGTGATT
CCCCTGCCTCTGCCTCCTGAGGGCAGGGATTAAGGGCTTGCCCCACCATACCTGGCAGAAATGT
TACTGTTTTTAAGTGAAGAAATGAAAAAGGGTTAGTTCTGAATGACAGTCCAGGTCATTTGTGG
AATCAACATTCCTGCTGGTAACCAGATTTCTTCAGGGCACAGTTACTCCAGAATTTCAGTTTGT
TTTCTTTTCATGGTAATGTTTTAAATTTCTGATTCCAAATGAGAATGCATATAATATTATTTAT
GTTGATAGATTTATGGGGAAAGTTTGTCCAAGATACTTAGTCCTATCTCTTTATGTTATATATC
AGATTTTTTTCAAAAGTATTTGAAAATTATAAATACTGTGAGGATTAATTTATTCTCTTGCCAT
TAAAAGCTATCATCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006250429 ⟹ XP_006250491

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	96,868,518 - 96,893,506 (+)	NCBI
Rnor_6.0	13	103,268,046 - 103,292,848 (+)	NCBI
Rnor_5.0	13	107,941,070 - 107,965,562 (+)	NCBI

Sequence:

show sequence

ACGCGCAGCCGCGGTCTTTCTCTGCACATTGAACTGGTGGACCTGGAGGCAGCCTGTTCTGTGA
CAGCGAGCCACCAGGCCGGACATCGCTTAGGGGACGCCAGGCTGACTGTTGATCATGGCTTCCA
GCCACAATGTGTTGATGCGGCTGGTAGCCTCCGCATACTCTATCGCTCAGAAGGCAGGAACCAT
CGTCAGGTGTGTCATCGCTGAAGGAGACCTGGGCATCGTGCAGAAGACCTCAGCCACTGACCTG
CAGACCAAAGCAGACCGCATGGTACAGATGAGCATATGCTCTTCCCTGTCCCGGAAATTCCCGA
AGCTGACGATCATCGGGGAAGAGGACCTGCCTCCTGGAGAAGTGGATCAAGAACTGATTGAAGA
CGGGCAGTCGGAGGAGATCCTGAAGCAGCCGTGCCCATCGCAGTACAGTGCAATCAAGGAGGAA
GACCTTGTGGTTTGGGTTGACCCCGTAGATGGTACCAAGGAATACACTGAAGGTCTTCTTGACA
ATGTAACAGTGCTCATTGGGATTGCTTATGAAGGAAAGGCCATCGCAGGCATCATCAACCAGCC
ATATTACAACTACCAGAACAATGAAAAGGAGAAGCTCAGGGAGCACAGGAATGAAGCAAAGGCA
GGACCGGACGCCGTGCTGGGCAGGACCATCTGGGGAGTCCTGGGTTTGGGTGCCTTTGGGTTTC
AGCTGAAAGAAGCCCCTGCTGGGAAGCACATCATCACCACCACCAGATCCCATAGCAACAAGCT
GGTCACAGACTGCATTGCAGCCATGAACCCTGACAACGTGCTGCGAGTGGGAGGAGCAGGAAAC
AAGATTATCCAGCTGATTGAAGGCAAAGCCTCTGCTTATGTATTTGCAAGTCCTGGATGTAAGA
AATGGGATACTTGTGCCCCAGAAGTTATCTTACATGCTGTAGGAGGGAAGTTGACAGACATCCA
CGGGAATCCCCTGCAGTACGACAAGGAGGTGAAACACATGAACTCTGCTGGAGTTCTGGCTGCA
CTGCGGAATTATGAGTACTATGCAAGCCGCGTACCAGAGTCTGTCAAAAGTGCACTCATTCCCT
GAAGGGGTCTCACTTACTTACCCAGGGGCCTCGGTTCAAAGTAACATATCTTAGAACTGATTAA
CTGATTGAACAATTAGAACTCCACTTGCATTCATCATTGATCAATGATTTATTAGTAGGTAGGG
ATAGAAGATGGAATTAAAGAATTGTCTTAGGTATATAACACAATTGTCATTTCTCCTGCCTAAA
AAAAAAAAATTAGCCAAGTGGTAGCACTTATGACAGTCATGGCCATTCCAGTGGCTGAGCTAGG
AGGGTTGCTTGAGCCCAGGGCCCCGAGACTAGCCTCCTTCACATAGCAAGACATAGCCCAAAAA
CAAAGAAGAAAAACAAAAAAGGAATTTACACTTGATCTTAGCCAAAAGGCCGAGAAGCGATCAA
AAAAGGAATTTAGTTTTACCAATTAGCTAACTAGACCTGTTTTGTTGTTGATGTTGTTGTTGTT
TGGTTTTTTGAGACAGGGTTTCTCTGTGCAGTCCTGGCTGTACTGAAATTTACTTAGTAGACAA
AGCTGGCCTTGAGCTCAGTGATTCCCCTGCCTCTGCCTCCTGAGGGCAGGGATTAAGGGCTTGC
CCCACCATACCTGGCAGAAATGTTACTGTTTTTAAGTGAAGAAATGAAAAAGGGTTAGTTCTGA
ATGACAGTCCAGGTCATTTGTGGAATCAACATTCCTGCTGGTAACCAGATTTCTTCAGGGCACA
GTTACTCCAGAATTTCAGTTTGTTTTCTTTTCATGGTAATGTTTTAAATTTCTGATTCCAAATG
AGAATGCATATAATATTATTTATGTTGATAGATTTATGGGGAAAGTTTGTCCAAGATACTTAGT
CCTATCTCTTTATGTTATATATCAGATTTTTTTCAAAAGTATTTGAAAATTATAAATACTGTGA
GGATTAATTTATTCTCTTGCCATTAAAAGCTATCATCAGAAA

hide sequence

RefSeq Acc Id:

XM_006250430 ⟹ XP_006250492

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	96,868,572 - 96,893,506 (+)	NCBI
Rnor_6.0	13	103,268,045 - 103,292,848 (+)	NCBI
Rnor_5.0	13	107,941,070 - 107,965,562 (+)	NCBI

Sequence:

show sequence

CACGCGCAGCCGCGGTCTTTCTCTGCACATTGAACTGGTGGACCTGGAGGCAGCCTGTTCTGTG
ACAGCGAGCCACCAGGCCGGACATCGCTTAGGGGACGCCAGGCTGACTGTAAGTTTCTCTGGCG
GCCGCGCAGAGCCTCAGGCGACCCTAGTTTCTAATTCAGGTTGATCATGGCTTCCAGCCACAAT
GTGTTGATGCGGCTGGTAGCCTCCGCATACTCTATCGCTCAGAAGGCAGGAACCATCGTCAGGT
GTGTCATCGCTGAAGGAGACCTGGGCATCGTGCAGAAGACCTCAGCCACTGACCTGCAGACCAA
AGCAGACCGCATGGTACAGATGAGCATATGCTCTTCCCTGTCCCGGAAATTCCCGAAGCTGACG
ATCATCGGGGAAGAGGACCTGCCTCCTGGAGAAGTGGATCAAGAACTGATTGAAGACGGGCAGT
CGGAGGAGATCCTGAAGCAGCCGTGCCCATCGCAGTACAGTGCAATCAAGGAGGAAGACCTTGT
GGTTTGGGTTGACCCCGTAGATGGTACCAAGGAATACACTGAAGGTCTTCTTGACAATGTAACA
GTGCTCATTGGGATTGCTTATGAAGGAAAGGCCATCGCAGGCATCATCAACCAGCCATATTACA
ACTACCAGAACAATGAAAAGGAGAAGCTCAGGGAGCACAGGAATGAAGCAAAGGCAGGACCGGA
CGCCGTGCTGGGCAGGACCATCTGGGGAGTCCTGGGTTTGGGTGCCTTTGGGTTTCAGCTGAAA
GAAGCCCCTGCTGGGAAGCACATCATCACCACCACCAGATCCCATAGCAACAAGCTGGTCACAG
ACTGCATTGCAGCCATGAACCCTGACAACGTGCTGCGAGTGGGAGGAGCAGGAAACAAGATTAT
CCAGCTGATTGAAGGCAAAGCCTCTGCTTATGTATTTGCAAGTCCTGGATGTAAGAAATGGGAT
ACTTGTGCCCCAGAAGTTATCTTACATGCTGTAGGAGGGAAGTTGACAGACATCCACGGGAATC
CCCTGCAGTACGACAAGGAGGTGAAACACATGAACTCTGCTGGAGTTCTGGCTGCACTGCGGAA
TTATGAGTACTATGCAAGCCGCGTACCAGAGTCTGTCAAAAGTGCACTCATTCCCTGAAGGGGT
CTCACTTACTTACCCAGGGGCCTCGGTTCAAAGTAACATATCTTAGAACTGATTAACTGATTGA
ACAATTAGAACTCCACTTGCATTCATCATTGATCAATGATTTATTAGTAGGTAGGGATAGAAGA
TGGAATTAAAGAATTGTCTTAGGTATATAACACAATTGTCATTTCTCCTGCCTAAAAAAAAAAA
ATTAGCCAAGTGGTAGCACTTATGACAGTCATGGCCATTCCAGTGGCTGAGCTAGGAGGGTTGC
TTGAGCCCAGGGCCCCGAGACTAGCCTCCTTCACATAGCAAGACATAGCCCAAAAACAAAGAAG
AAAAACAAAAAAGGAATTTACACTTGATCTTAGCCAAAAGGCCGAGAAGCGATCAAAAAAGGAA
TTTAGTTTTACCAATTAGCTAACTAGACCTGTTTTGTTGTTGATGTTGTTGTTGTTTGGTTTTT
TGAGACAGGGTTTCTCTGTGCAGTCCTGGCTGTACTGAAATTTACTTAGTAGACAAAGCTGGCC
TTGAGCTCAGTGATTCCCCTGCCTCTGCCTCCTGAGGGCAGGGATTAAGGGCTTGCCCCACCAT
ACCTGGCAGAAATGTTACTGTTTTTAAGTGAAGAAATGAAAAAGGGTTAGTTCTGAATGACAGT
CCAGGTCATTTGTGGAATCAACATTCCTGCTGGTAACCAGATTTCTTCAGGGCACAGTTACTCC
AGAATTTCAGTTTGTTTTCTTTTCATGGTAATGTTTTAAATTTCTGATTCCAAATGAGAATGCA
TATAATATTATTTATGTTGATAGATTTATGGGGAAAGTTTGTCCAAGATACTTAGTCCTATCTC
TTTATGTTATATATCAGATTTTTTTCAAAAGTATTTGAAAATTATAAATACTGTGAGGATTAAT
TTATTCTCTTGCCATTAAAAGCTATCATCAGAAA

hide sequence

RefSeq Acc Id:

XM_006250431 ⟹ XP_006250493

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	96,868,572 - 96,893,506 (+)	NCBI
Rnor_6.0	13	103,268,046 - 103,292,848 (+)	NCBI
Rnor_5.0	13	107,941,070 - 107,965,562 (+)	NCBI

Sequence:

show sequence

ACGCGCAGCCGCGGTCTTTCTCTGCACATTGAACTGGTGGACCTGGAGGCAGCCTGTTCTGTGA
CAGCGAGCCACCAGGCCGGACATCGCTTAGGGGACGCCAGGCTGACTGTAAGTTTCTCTGGCGG
CCGCGCAGAGCCTCAGGCGACCCTAGTTTCTAATTCAGGTTGATCATGGCTTCCAGCCACAATG
TGTTGATGCGGCTGGTAGCCTCCGCATACTCTATCGCTCAGAAGGCAGGAACCATCGTCAGGTG
TGTCATCGCTGAAGGAGACCTGGGCATCGTGCAGAAGACCTCAGCCACTGACCTGCAGACCAAA
GCAGACCGCATGGTACAGATGAGCATATGCTCTTCCCTGTCCCGGAAATTCCCGAAGCTGACGA
TCATCGGGGAAGAGGACCTGCCTCCTGGAGAAGTGGATCAAGAACTGATTGAAGACGGGCAGTC
GGAGGAGATCCTGAAGCAGCCGTGCCCATCGCAGTACAGTGCAATCAAGGAGGAAGACCTTGTG
GTTTGGGTTGACCCCGTAGATGGTACCAAGGAATACACTGAAGGTCTTCTTGACAATGTAACAG
TGCTCATTGGGATTGCTTATGAAGGAAAGGCCATCGCAGGCATCATCAACCAGCCATATTACAA
CTACCAGGCAGGACCGGACGCCGTGCTGGGCAGGACCATCTGGGGAGTCCTGGGTTTGGGTGCC
TTTGGGTTTCAGCTGAAAGAAGCCCCTGCTGGGAAGCACATCATCACCACCACCAGATCCCATA
GCAACAAGCTGGTCACAGACTGCATTGCAGCCATGAACCCTGACAACGTGCTGCGAGTGGGAGG
AGCAGGAAACAAGATTATCCAGCTGATTGAAGGCAAAGCCTCTGCTTATGTATTTGCAAGTCCT
GGATGTAAGAAATGGGATACTTGTGCCCCAGAAGTTATCTTACATGCTGTAGGAGGGAAGTTGA
CAGACATCCACGGGAATCCCCTGCAGTACGACAAGGAGGTGAAACACATGAACTCTGCTGGAGT
TCTGGCTGCACTGCGGAATTATGAGTACTATGCAAGCCGCGTACCAGAGTCTGTCAAAAGTGCA
CTCATTCCCTGAAGGGGTCTCACTTACTTACCCAGGGGCCTCGGTTCAAAGTAACATATCTTAG
AACTGATTAACTGATTGAACAATTAGAACTCCACTTGCATTCATCATTGATCAATGATTTATTA
GTAGGTAGGGATAGAAGATGGAATTAAAGAATTGTCTTAGGTATATAACACAATTGTCATTTCT
CCTGCCTAAAAAAAAAAAATTAGCCAAGTGGTAGCACTTATGACAGTCATGGCCATTCCAGTGG
CTGAGCTAGGAGGGTTGCTTGAGCCCAGGGCCCCGAGACTAGCCTCCTTCACATAGCAAGACAT
AGCCCAAAAACAAAGAAGAAAAACAAAAAAGGAATTTACACTTGATCTTAGCCAAAAGGCCGAG
AAGCGATCAAAAAAGGAATTTAGTTTTACCAATTAGCTAACTAGACCTGTTTTGTTGTTGATGT
TGTTGTTGTTTGGTTTTTTGAGACAGGGTTTCTCTGTGCAGTCCTGGCTGTACTGAAATTTACT
TAGTAGACAAAGCTGGCCTTGAGCTCAGTGATTCCCCTGCCTCTGCCTCCTGAGGGCAGGGATT
AAGGGCTTGCCCCACCATACCTGGCAGAAATGTTACTGTTTTTAAGTGAAGAAATGAAAAAGGG
TTAGTTCTGAATGACAGTCCAGGTCATTTGTGGAATCAACATTCCTGCTGGTAACCAGATTTCT
TCAGGGCACAGTTACTCCAGAATTTCAGTTTGTTTTCTTTTCATGGTAATGTTTTAAATTTCTG
ATTCCAAATGAGAATGCATATAATATTATTTATGTTGATAGATTTATGGGGAAAGTTTGTCCAA
GATACTTAGTCCTATCTCTTTATGTTATATATCAGATTTTTTTCAAAAGTATTTGAAAATTATA
AATACTGTGAGGATTAATTTATTCTCTTGCCATTAAAAGCTATCATCAGAAA

hide sequence

RefSeq Acc Id:

XM_039091064 ⟹ XP_038946992

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	96,865,634 - 96,893,506 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_741987	(Get FASTA)	NCBI Sequence Viewer
	XP_006250491	(Get FASTA)	NCBI Sequence Viewer
	XP_006250492	(Get FASTA)	NCBI Sequence Viewer
	XP_006250493	(Get FASTA)	NCBI Sequence Viewer
	XP_038946992	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH85692	(Get FASTA)	NCBI Sequence Viewer
	CAA04022	(Get FASTA)	NCBI Sequence Viewer
	EDL94912	(Get FASTA)	NCBI Sequence Viewer
	EDL94913	(Get FASTA)	NCBI Sequence Viewer
	EDL94914	(Get FASTA)	NCBI Sequence Viewer
	EDL94915	(Get FASTA)	NCBI Sequence Viewer
	EDL94916	(Get FASTA)	NCBI Sequence Viewer
	EDL94917	(Get FASTA)	NCBI Sequence Viewer
	EDL94918	(Get FASTA)	NCBI Sequence Viewer
	EDL94919	(Get FASTA)	NCBI Sequence Viewer
	Q9Z1N4	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_741987 ⟸ NM_171990

- UniProtKB:

Q9Z1N4 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MASSHNVLMRLVASAYSIAQKAGTIVRCVIAEGDLGIVQKTSATDLQTKADRMVQMSICSSLSR
KFPKLTIIGEEDLPPGEVDQELIEDGQSEEILKQPCPSQYSAIKEEDLVVWVDPVDGTKEYTEG
LLDNVTVLIGIAYEGKAIAGIINQPYYNYQAGPDAVLGRTIWGVLGLGAFGFQLKEAPAGKHII
TTTRSHSNKLVTDCIAAMNPDNVLRVGGAGNKIIQLIEGKASAYVFASPGCKKWDTCAPEVILH
AVGGKLTDIHGNPLQYDKEVKHMNSAGVLAALRNYEYYASRVPESVKSALIP

hide sequence

RefSeq Acc Id:	XP_006250491 ⟸ XM_006250429
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K0V3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASSHNVLMRLVASAYSIAQKAGTIVRCVIAEGDLGIVQKTSATDLQTKADRMVQMSICSSLSR KFPKLTIIGEEDLPPGEVDQELIEDGQSEEILKQPCPSQYSAIKEEDLVVWVDPVDGTKEYTEG LLDNVTVLIGIAYEGKAIAGIINQPYYNYQNNEKEKLREHRNEAKAGPDAVLGRTIWGVLGLGA FGFQLKEAPAGKHIITTTRSHSNKLVTDCIAAMNPDNVLRVGGAGNKIIQLIEGKASAYVFASP GCKKWDTCAPEVILHAVGGKLTDIHGNPLQYDKEVKHMNSAGVLAALRNYEYYASRVPESVKSA LIP hide sequence

RefSeq Acc Id:	XP_006250492 ⟸ XM_006250430
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K0V3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASSHNVLMRLVASAYSIAQKAGTIVRCVIAEGDLGIVQKTSATDLQTKADRMVQMSICSSLSR KFPKLTIIGEEDLPPGEVDQELIEDGQSEEILKQPCPSQYSAIKEEDLVVWVDPVDGTKEYTEG LLDNVTVLIGIAYEGKAIAGIINQPYYNYQNNEKEKLREHRNEAKAGPDAVLGRTIWGVLGLGA FGFQLKEAPAGKHIITTTRSHSNKLVTDCIAAMNPDNVLRVGGAGNKIIQLIEGKASAYVFASP GCKKWDTCAPEVILHAVGGKLTDIHGNPLQYDKEVKHMNSAGVLAALRNYEYYASRVPESVKSA LIP hide sequence

RefSeq Acc Id:	XP_006250493 ⟸ XM_006250431
- Peptide Label:	isoform X2
- UniProtKB:	Q9Z1N4 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MASSHNVLMRLVASAYSIAQKAGTIVRCVIAEGDLGIVQKTSATDLQTKADRMVQMSICSSLSR KFPKLTIIGEEDLPPGEVDQELIEDGQSEEILKQPCPSQYSAIKEEDLVVWVDPVDGTKEYTEG LLDNVTVLIGIAYEGKAIAGIINQPYYNYQAGPDAVLGRTIWGVLGLGAFGFQLKEAPAGKHII TTTRSHSNKLVTDCIAAMNPDNVLRVGGAGNKIIQLIEGKASAYVFASPGCKKWDTCAPEVILH AVGGKLTDIHGNPLQYDKEVKHMNSAGVLAALRNYEYYASRVPESVKSALIP hide sequence

RefSeq Acc Id:

ENSRNOP00000071594 ⟸ ENSRNOT00000088921

RefSeq Acc Id:

ENSRNOP00000003249 ⟸ ENSRNOT00000003249

RefSeq Acc Id:	XP_038946992 ⟸ XM_039091064
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K0V3 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000080410 ⟸ ENSRNOT00000096481

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9Z1N4-F1-model_v2	AlphaFold	Q9Z1N4	1-308	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699095

Promoter ID:

EPDNEW_R9616

Type:

initiation region

Name:

Bpnt1_1

Description:

3'(2'), 5'-bisphosphate nucleotidase 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	103,268,071 - 103,268,131	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621833	AgrOrtholog
BioCyc Gene	G2FUF-16980	BioCyc
Ensembl Genes	ENSRNOG00000002378	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000003249.6	UniProtKB/TrEMBL
	ENSRNOP00000071594	ENTREZGENE
	ENSRNOP00000071594.1	UniProtKB/TrEMBL
	ENSRNOP00000080410.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000003249.7	UniProtKB/TrEMBL
	ENSRNOT00000088921	ENTREZGENE
	ENSRNOT00000088921.2	UniProtKB/TrEMBL
	ENSRNOT00000096481.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.190.80	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Fructose-1,6-Bisphosphatase, subunit A, domain 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7190529	IMAGE-MGC_LOAD
InterPro	Inositol_monoP_metal-BS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Inositol_monophosphatase-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Inositol_monophosphatase_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:64473	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:93112	IMAGE-MGC_LOAD
NCBI Gene	64473	ENTREZGENE
PANTHER	3'(2'),5'-BISPHOSPHATE NUCLEOTIDASE 1	UniProtKB/Swiss-Prot
	3'(2'),5'-BISPHOSPHATE NUCLEOTIDASE 1	UniProtKB/Swiss-Prot
	3'(2'),5'-BISPHOSPHATE NUCLEOTIDASE 1	UniProtKB/TrEMBL
	3'(2'),5'-BISPHOSPHATE NUCLEOTIDASE 1	UniProtKB/TrEMBL
Pfam	Inositol_P	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Bpnt1	PhenoGen
PRINTS	IMPHPHTASES	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	IMP_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	IMP_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	Carbohydrate phosphatase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2K0V3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZPR2_RAT	UniProtKB/TrEMBL
	A0A8L2Q072_RAT	UniProtKB/TrEMBL
	BPNT1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-09-26	Bpnt1	3'(2'), 5'-bisphosphate nucleotidase 1	Bpnt1	bisphosphate 3'-nucleotidase 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-11-17	Bpnt1	bisphosphate 3'-nucleotidase 1			Name updated	1299863	APPROVED
2005-01-20	Bpnt1	3'(2'),5'-bisphosphate nucleotidase		3(2),5-bisphosphate nucleotidase	Name updated	1299863	APPROVED
2002-08-07	Bpnt1	3(2),5-bisphosphate nucleotidase			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_regulation	enzyme activity is dependent on Mg2+ and is inhibited by Ca2+ and Li+ ions	632277

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)