Camk1g (calcium/calmodulin-dependent protein kinase IG) - Rat Genome Database

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Gene: Camk1g (calcium/calmodulin-dependent protein kinase IG) Rattus norvegicus
Analyze
Symbol: Camk1g
Name: calcium/calmodulin-dependent protein kinase IG
RGD ID: 621800
Description: Enables calmodulin-dependent protein kinase activity. Predicted to be involved in phosphorylation. Predicted to be located in endomembrane system and plasma membrane. Predicted to be part of calcium- and calmodulin-dependent protein kinase complex. Orthologous to human CAMK1G (calcium/calmodulin dependent protein kinase IG); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: calcium/calmodulin-dependent protein kinase I gamma; calcium/calmodulin-dependent protein kinase type 1G; caM kinase I gamma; caM kinase IG; caM-KI gamma; caMK-like CREB kinase III; caMKI gamma; caMKI-gamma; caMKIG; CLICK III
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr813107,406,583 - 107,430,332 (-)NCBIGRCr8
mRatBN7.213104,877,909 - 104,901,658 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl13104,877,910 - 104,901,556 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx13107,395,501 - 107,419,139 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.013108,779,366 - 108,803,004 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.013105,997,308 - 106,020,952 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.013112,075,689 - 112,099,472 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13112,075,690 - 112,099,336 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013116,631,305 - 116,655,048 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.413109,192,833 - 109,216,471 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.113109,381,936 - 109,405,575 (-)NCBI
Celera13104,307,254 - 104,330,886 (-)NCBICelera
Cytogenetic Map13q27NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. Cloning, characterization and expression of two alternatively splicing isoforms of Ca2+/calmodulin-dependent protein kinase I gamma in the rat brain. Nishimura H, etal., J Neurochem 2003 Jun;85(5):1216-27.
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Isolation and comparison of rat cDNAs encoding Ca2+/calmodulin-dependent protein kinase I isoforms. Yokokura H, etal., Biochim Biophys Acta 1997 Mar 7;1338(1):8-12.
Additional References at PubMed
PMID:12637513   PMID:19657032  


Genomics

Comparative Map Data
Camk1g
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr813107,406,583 - 107,430,332 (-)NCBIGRCr8
mRatBN7.213104,877,909 - 104,901,658 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl13104,877,910 - 104,901,556 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx13107,395,501 - 107,419,139 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.013108,779,366 - 108,803,004 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.013105,997,308 - 106,020,952 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.013112,075,689 - 112,099,472 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13112,075,690 - 112,099,336 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013116,631,305 - 116,655,048 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.413109,192,833 - 109,216,471 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.113109,381,936 - 109,405,575 (-)NCBI
Celera13104,307,254 - 104,330,886 (-)NCBICelera
Cytogenetic Map13q27NCBI
CAMK1G
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381209,583,714 - 209,613,939 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1209,583,714 - 209,613,939 (+)EnsemblGRCh38hg38GRCh38
GRCh371209,757,059 - 209,787,284 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361207,823,668 - 207,853,907 (+)NCBINCBI36Build 36hg18NCBI36
Build 341206,145,439 - 206,175,678NCBI
Celera1182,987,934 - 183,018,193 (+)NCBICelera
Cytogenetic Map1q32.2NCBI
HuRef1180,432,359 - 180,462,572 (+)NCBIHuRef
CHM1_11211,029,406 - 211,059,690 (+)NCBICHM1_1
T2T-CHM13v2.01208,830,506 - 208,860,706 (+)NCBIT2T-CHM13v2.0
Camk1g
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391193,028,654 - 193,052,636 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1193,028,654 - 193,052,606 (-)EnsemblGRCm39 Ensembl
GRCm381193,346,346 - 193,370,355 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1193,346,346 - 193,370,298 (-)EnsemblGRCm38mm10GRCm38
MGSCv371195,172,540 - 195,196,476 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361195,047,079 - 195,070,954 (-)NCBIMGSCv36mm8
Celera1200,223,602 - 200,247,543 (-)NCBICelera
Cytogenetic Map1H6NCBI
cM Map197.74NCBI
Camk1g
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554892,604,030 - 2,629,436 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554892,604,030 - 2,629,394 (-)NCBIChiLan1.0ChiLan1.0
CAMK1G
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2139,787,224 - 39,817,539 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1139,753,466 - 39,783,781 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01185,160,170 - 185,190,470 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11189,965,450 - 189,995,703 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1189,965,490 - 189,995,703 (+)Ensemblpanpan1.1panPan2
CAMK1G
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.178,240,752 - 8,271,116 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl78,240,093 - 8,271,071 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha77,818,261 - 7,848,439 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.077,941,487 - 7,971,834 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl77,941,632 - 7,971,831 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.177,871,478 - 7,901,664 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.077,968,441 - 7,998,797 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.078,029,453 - 8,059,700 (+)NCBIUU_Cfam_GSD_1.0
Camk1g
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934466,248,597 - 66,275,643 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365573,489,445 - 3,515,916 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365573,488,883 - 3,515,819 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CAMK1G
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9133,351,528 - 133,379,705 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19133,351,523 - 133,380,454 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29146,503,422 - 146,520,739 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CAMK1G
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12519,847,618 - 19,879,376 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2519,848,690 - 19,877,875 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605520,447,583 - 20,477,912 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Camk1g
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248072,379,097 - 2,401,205 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248072,379,175 - 2,402,263 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Camk1g
108 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:537
Count of miRNA genes:221
Interacting mature miRNAs:269
Transcripts:ENSRNOT00000009158, ENSRNOT00000044161
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1361825626106807694Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1365103704106807694Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1365103704106807694Rat
4889606Gluco63Glucose level QTL 632.860.003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1380753256106807694Rat

Markers in Region
D13Got102  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.213104,889,451 - 104,889,683 (+)MAPPERmRatBN7.2
Rnor_6.013112,087,232 - 112,087,463NCBIRnor6.0
Rnor_5.013116,642,848 - 116,643,079UniSTSRnor5.0
RGSC_v3.413109,204,366 - 109,204,598RGDRGSC3.4
RGSC_v3.413109,204,367 - 109,204,598UniSTSRGSC3.4
RGSC_v3.113109,393,471 - 109,393,702RGD
Celera13104,318,788 - 104,319,013UniSTS
RH 3.4 Map13776.2UniSTS
RH 3.4 Map13776.2RGD
RH 2.0 Map13776.1RGD
Cytogenetic Map13q27UniSTS
GDB:371676  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.213104,901,308 - 104,901,822 (+)MAPPERmRatBN7.2
Rnor_6.013112,099,089 - 112,099,602NCBIRnor6.0
Rnor_5.013116,654,705 - 116,655,218UniSTSRnor5.0
RGSC_v3.413109,216,224 - 109,216,737UniSTSRGSC3.4
Celera13104,330,639 - 104,331,152UniSTS
Cytogenetic Map13q27UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 6 67 14 9
Low 20 6 6 6 7 8 22 11
Below cutoff 3 12 25 13 8 13 5 5 13 10 5

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000009158   ⟹   ENSRNOP00000009158
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl13104,877,910 - 104,901,556 (-)Ensembl
Rnor_6.0 Ensembl13112,075,690 - 112,099,336 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000044161   ⟹   ENSRNOP00000041124
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl13104,877,910 - 104,901,556 (-)Ensembl
Rnor_6.0 Ensembl13112,075,690 - 112,099,336 (-)Ensembl
RefSeq Acc Id: NM_182842   ⟹   NP_878262
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr813107,406,592 - 107,430,230 (-)NCBI
mRatBN7.213104,877,918 - 104,901,556 (-)NCBI
Rnor_6.013112,075,698 - 112,099,336 (-)NCBI
Rnor_5.013116,631,305 - 116,655,048 (-)NCBI
RGSC_v3.413109,192,833 - 109,216,471 (-)RGD
Celera13104,307,254 - 104,330,886 (-)RGD
Sequence:
RefSeq Acc Id: XM_006250470   ⟹   XP_006250532
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr813107,406,583 - 107,430,332 (-)NCBI
mRatBN7.213104,877,909 - 104,901,658 (-)NCBI
Rnor_6.013112,075,689 - 112,099,472 (-)NCBI
Rnor_5.013116,631,305 - 116,655,048 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063271992   ⟹   XP_063128062
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr813107,407,547 - 107,430,332 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_878262   ⟸   NM_182842
- UniProtKB: O08763 (UniProtKB/Swiss-Prot),   Q7TNJ6 (UniProtKB/Swiss-Prot),   Q7TNJ7 (UniProtKB/Swiss-Prot),   A6JH32 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006250532   ⟸   XM_006250470
- Peptide Label: isoform X2
- UniProtKB: A6JH31 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000009158   ⟸   ENSRNOT00000009158
RefSeq Acc Id: ENSRNOP00000041124   ⟸   ENSRNOT00000044161
RefSeq Acc Id: XP_063128062   ⟸   XM_063271992
- Peptide Label: isoform X1
- UniProtKB: Q7TNJ7 (UniProtKB/Swiss-Prot),   Q7TNJ6 (UniProtKB/Swiss-Prot),   O08763 (UniProtKB/Swiss-Prot),   A6JH32 (UniProtKB/TrEMBL)
Protein Domains
Protein kinase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q7TNJ7-F1-model_v2 AlphaFold Q7TNJ7 1-476 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621800 AgrOrtholog
BioCyc Gene G2FUF-16783 BioCyc
Ensembl Genes ENSRNOG00000006470 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00055011115 UniProtKB/Swiss-Prot
  ENSRNOG00060013539 UniProtKB/Swiss-Prot
  ENSRNOG00065004417 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000009158 ENTREZGENE
  ENSRNOT00000009158.7 UniProtKB/Swiss-Prot
  ENSRNOT00000044161 ENTREZGENE
  ENSRNOT00000044161.3 UniProtKB/Swiss-Prot
  ENSRNOT00055018851 UniProtKB/Swiss-Prot
  ENSRNOT00060023094 UniProtKB/Swiss-Prot
  ENSRNOT00065006432 UniProtKB/Swiss-Prot
Gene3D-CATH Transferase(Phosphotransferase) domain 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Kinase-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:171358 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 171358 ENTREZGENE
PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE TYPE 1G UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SERINE/THREONINE-PROTEIN KINASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Pkinase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Camk1g PhenoGen
PROSITE PROTEIN_KINASE_ATP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000006470 RatGTEx
  ENSRNOG00055011115 RatGTEx
  ENSRNOG00060013539 RatGTEx
  ENSRNOG00065004417 RatGTEx
SMART S_TKc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Protein kinase-like (PK-like) UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
UniProt A6JH31 ENTREZGENE, UniProtKB/TrEMBL
  A6JH32 ENTREZGENE, UniProtKB/TrEMBL
  A6JH33_RAT UniProtKB/TrEMBL
  KCC1G_RAT UniProtKB/Swiss-Prot
  O08763 ENTREZGENE
  Q7TNJ6 ENTREZGENE
  Q7TNJ7 ENTREZGENE
UniProt Secondary O08763 UniProtKB/Swiss-Prot
  Q7TNJ6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-10-24 Camk1g  calcium/calmodulin-dependent protein kinase IG  Camk1g  calcium/calmodulin-dependent protein kinase I gamma  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-12-14 Camk1g  calcium/calmodulin-dependent protein kinase I gamma    calcium/calmodulin-dependent protein kinase IG  Name updated 1299863 APPROVED
2002-08-07 Camk1g  calcium/calmodulin-dependent protein kinase IG      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_expression expressed in the olfactory bulb, hippocampal pyramidal cell layer of CA3, central amygdaloid nuclei, ventromedial hypothalamic nucleus and pineal gland of the brain 68749
gene_transcript consists of two alternatively splicing isoforms termed CaMKI gamma 1 and -gamma 2 68749