Extl3 (exostosin-like glycosyltransferase 3) - Rat Genome Database

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Gene: Extl3 (exostosin-like glycosyltransferase 3) Rattus norvegicus
Analyze
Symbol: Extl3
Name: exostosin-like glycosyltransferase 3
RGD ID: 62065
Description: Predicted to enable glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity; magnesium ion binding activity; and protein-hormone receptor activity. Involved in positive regulation of cell growth. Predicted to be located in endoplasmic reticulum. Predicted to be active in Golgi apparatus and plasma membrane. Orthologous to human EXTL3 (exostosin like glycosyltransferase 3); PARTICIPATES IN heparan sulfate biosynthetic pathway; INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: exostoses (multiple)-like 3; exostoses-like 3; exostosin-like 3; exostosin-like 3-like; LOC102549615; Reg receptor; Regr
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81543,469,293 - 43,559,760 (-)NCBIGRCr8
mRatBN7.21539,294,033 - 39,384,086 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1539,293,605 - 39,338,898 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1541,159,992 - 41,183,433 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01542,310,683 - 42,334,125 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01540,756,090 - 40,779,885 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01548,420,419 - 48,465,171 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1548,422,492 - 48,445,592 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01552,167,241 - 52,307,996 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41544,400,139 - 44,424,584 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11544,415,838 - 44,440,284 (-)NCBI
Celera1538,971,658 - 38,994,995 (-)NCBICelera
Cytogenetic Map15p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Localization of Reg receptor in rat fundic mucosa. Kazumori H, etal., J Lab Clin Med 2002 Feb;139(2):101-8.
3. Identification of a receptor for reg (regenerating gene) protein, a pancreatic beta-cell regeneration factor. Kobayashi S, etal., J Biol Chem 2000 Apr 14;275(15):10723-6.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. GOA pipeline RGD automated data pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
Additional References at PubMed
PMID:10639137   PMID:16874863   PMID:22158612   PMID:28132690   PMID:28148688  


Genomics

Comparative Map Data
Extl3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81543,469,293 - 43,559,760 (-)NCBIGRCr8
mRatBN7.21539,294,033 - 39,384,086 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1539,293,605 - 39,338,898 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1541,159,992 - 41,183,433 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01542,310,683 - 42,334,125 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01540,756,090 - 40,779,885 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01548,420,419 - 48,465,171 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1548,422,492 - 48,445,592 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01552,167,241 - 52,307,996 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41544,400,139 - 44,424,584 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11544,415,838 - 44,440,284 (-)NCBI
Celera1538,971,658 - 38,994,995 (-)NCBICelera
Cytogenetic Map15p12NCBI
EXTL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38828,607,736 - 28,755,599 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl828,600,469 - 28,756,561 (+)EnsemblGRCh38hg38GRCh38
GRCh37828,559,018 - 28,613,116 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36828,615,072 - 28,667,121 (+)NCBINCBI36Build 36hg18NCBI36
Build 34828,615,071 - 28,667,121NCBI
Celera827,519,006 - 27,571,052 (+)NCBICelera
Cytogenetic Map8p21.1NCBI
HuRef827,104,516 - 27,156,747 (+)NCBIHuRef
CHM1_1828,761,018 - 28,813,245 (+)NCBICHM1_1
T2T-CHM13v2.0828,885,904 - 29,033,822 (+)NCBIT2T-CHM13v2.0
Extl3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391465,289,508 - 65,387,322 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1465,289,509 - 65,387,304 (-)EnsemblGRCm39 Ensembl
GRCm381465,052,059 - 65,149,899 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1465,052,060 - 65,149,855 (-)EnsemblGRCm38mm10GRCm38
MGSCv371465,670,896 - 65,716,943 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361464,006,173 - 64,034,585 (-)NCBIMGSCv36mm8
Celera1462,814,500 - 62,860,622 (-)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1433.86NCBI
Extl3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540351,076,319 - 51,102,435 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540351,076,323 - 51,102,435 (+)NCBIChiLan1.0ChiLan1.0
EXTL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2747,141,178 - 47,300,524 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1822,877,190 - 23,013,515 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0827,983,700 - 28,035,879 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1825,079,531 - 25,233,599 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl825,174,414 - 25,233,599 (+)Ensemblpanpan1.1panPan2
EXTL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12528,788,803 - 28,833,964 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2528,790,506 - 28,937,647 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2529,437,368 - 29,587,684 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02528,944,632 - 29,095,861 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2528,944,637 - 29,029,690 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12528,905,043 - 29,055,721 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02528,790,655 - 28,940,548 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02528,953,232 - 29,105,065 (-)NCBIUU_Cfam_GSD_1.0
Extl3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049437,108,930 - 7,137,757 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366751,448,366 - 1,477,216 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366751,448,381 - 1,479,735 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EXTL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1412,437,515 - 12,563,544 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11412,437,551 - 12,563,548 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21413,660,607 - 13,712,760 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EXTL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1826,729,772 - 26,861,953 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl826,821,141 - 26,864,926 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605215,268,419 - 15,404,953 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Extl3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475823,324,512 - 23,368,584 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475823,257,623 - 23,370,782 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Extl3
529 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:182
Count of miRNA genes:130
Interacting mature miRNAs:154
Transcripts:ENSRNOT00000018583
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)151985656646187442Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
2293691Bmd37Bone mineral density QTL 376.60.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)153361105871477291Rat
2293686Bmd36Bone mineral density QTL 367.40.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)153361105871477291Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)153405413979054139Rat

Markers in Region
BF392677  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21539,304,655 - 39,304,761 (+)MAPPERmRatBN7.2
Rnor_6.01548,430,778 - 48,430,883NCBIRnor6.0
Rnor_5.01552,177,600 - 52,177,705UniSTSRnor5.0
RGSC_v3.41544,409,770 - 44,409,875UniSTSRGSC3.4
Celera1538,980,202 - 38,980,307UniSTS
RH 3.4 Map15335.52UniSTS
Cytogenetic Map15p12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 33 30 14 18 14 8 11 74 33 34 11 8
Low 2 10 27 27 1 27 2 7
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000018583   ⟹   ENSRNOP00000018583
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1539,293,605 - 39,338,898 (-)Ensembl
Rnor_6.0 Ensembl1548,422,492 - 48,445,592 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000077197   ⟹   ENSRNOP00000073791
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1539,301,240 - 39,338,844 (-)Ensembl
Rnor_6.0 Ensembl1548,422,918 - 48,445,588 (-)Ensembl
RefSeq Acc Id: NM_020097   ⟹   NP_064482
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81543,471,366 - 43,495,161 (-)NCBI
mRatBN7.21539,295,673 - 39,319,472 (-)NCBI
Rnor_6.01548,422,492 - 48,445,592 (-)NCBI
Rnor_5.01552,167,241 - 52,307,996 (-)NCBI
RGSC_v3.41544,400,139 - 44,424,584 (-)RGD
Celera1538,971,658 - 38,994,995 (-)RGD
Sequence:
RefSeq Acc Id: XM_006252206   ⟹   XP_006252268
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81543,469,293 - 43,514,885 (-)NCBI
mRatBN7.21539,294,033 - 39,339,196 (-)NCBI
Rnor_6.01548,420,419 - 48,465,169 (-)NCBI
Rnor_5.01552,167,241 - 52,307,996 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039093618   ⟹   XP_038949546
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81543,469,293 - 43,514,887 (-)NCBI
mRatBN7.21539,294,033 - 39,339,196 (-)NCBI
RefSeq Acc Id: XM_039093619   ⟹   XP_038949547
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81543,469,293 - 43,559,760 (-)NCBI
mRatBN7.21539,294,033 - 39,384,064 (-)NCBI
RefSeq Acc Id: XM_039093620   ⟹   XP_038949548
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81543,469,293 - 43,514,887 (-)NCBI
mRatBN7.21539,294,033 - 39,339,196 (-)NCBI
RefSeq Acc Id: XM_039093622   ⟹   XP_038949550
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81543,469,293 - 43,559,751 (-)NCBI
mRatBN7.21539,294,033 - 39,384,086 (-)NCBI
RefSeq Acc Id: XM_039093623   ⟹   XP_038949551
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81543,469,293 - 43,514,887 (-)NCBI
mRatBN7.21539,294,033 - 39,339,198 (-)NCBI
RefSeq Acc Id: XM_063274596   ⟹   XP_063130666
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81543,469,293 - 43,514,887 (-)NCBI
RefSeq Acc Id: XM_063274597   ⟹   XP_063130667
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81543,469,293 - 43,514,887 (-)NCBI
RefSeq Acc Id: NP_064482   ⟸   NM_020097
- UniProtKB: A0A0G2K6F4 (UniProtKB/TrEMBL),   F7F308 (UniProtKB/TrEMBL),   Q9JMA8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252268   ⟸   XM_006252206
- Peptide Label: isoform X1
- UniProtKB: Q9JMA8 (UniProtKB/TrEMBL),   A0A0G2K6F4 (UniProtKB/TrEMBL),   F7F308 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000073791   ⟸   ENSRNOT00000077197
RefSeq Acc Id: ENSRNOP00000018583   ⟸   ENSRNOT00000018583
RefSeq Acc Id: XP_038949550   ⟸   XM_039093622
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K6F4 (UniProtKB/TrEMBL),   F7F308 (UniProtKB/TrEMBL),   Q9JMA8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949547   ⟸   XM_039093619
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K6F4 (UniProtKB/TrEMBL),   F7F308 (UniProtKB/TrEMBL),   Q9JMA8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949551   ⟸   XM_039093623
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K6F4 (UniProtKB/TrEMBL),   F7F308 (UniProtKB/TrEMBL),   Q9JMA8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949546   ⟸   XM_039093618
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K6F4 (UniProtKB/TrEMBL),   F7F308 (UniProtKB/TrEMBL),   Q9JMA8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949548   ⟸   XM_039093620
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K6F4 (UniProtKB/TrEMBL),   F7F308 (UniProtKB/TrEMBL),   Q9JMA8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130667   ⟸   XM_063274597
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063130666   ⟸   XM_063274596
- Peptide Label: isoform X1
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JMA8-F1-model_v2 AlphaFold Q9JMA8 1-919 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:62065 AgrOrtholog
BioCyc Gene G2FUF-13365 BioCyc
BioCyc Pathway PWY-6558 [heparan sulfate biosynthesis] BioCyc
BioCyc Pathway Image PWY-6558 BioCyc
Ensembl Genes ENSRNOG00000013581 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000018583.4 UniProtKB/TrEMBL
  ENSRNOT00000077197.2 UniProtKB/TrEMBL
InterPro Exostosin UniProtKB/TrEMBL
  Exostosin_GT47 UniProtKB/TrEMBL
  HexNAc_Trfase_a UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
KEGG Report rno:56819 UniProtKB/TrEMBL
NCBI Gene Extl3 ENTREZGENE
PANTHER ACETYLGLUCOSAMINYLTRANSFERASE UniProtKB/TrEMBL
  ACETYLGLUCOSAMINYLTRANSFERASE UniProtKB/TrEMBL
Pfam Exostosin UniProtKB/TrEMBL
  Glyco_transf_64 UniProtKB/TrEMBL
PhenoGen Extl3 PhenoGen
RatGTEx ENSRNOG00000013581 RatGTEx
Superfamily-SCOP SSF53448 UniProtKB/TrEMBL
TIGR TC226254
UniProt A0A0G2K6F4 ENTREZGENE, UniProtKB/TrEMBL
  F7F308 ENTREZGENE, UniProtKB/TrEMBL
  Q9JMA8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Extl3  exostosin-like glycosyltransferase 3  LOC102549615  exostosin-like 3-like  Data merged from RGD:7558291 737654 PROVISIONAL
2013-12-17 LOC102549615  exostosin-like 3-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-03-06 Extl3  exostosin-like glycosyltransferase 3  Extl3  exostoses (multiple)-like 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-06-10 Extl3  exostoses (multiple)-like 3      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_protein 919 amino acids 61576