Ppt2 (palmitoyl-protein thioesterase 2)

Gene: Ppt2 (palmitoyl-protein thioesterase 2) Rattus norvegicus

Analyze

Symbol:

Ppt2

Name:

palmitoyl-protein thioesterase 2

RGD ID:

620375

Description:

Predicted to enable palmitoyl hydrolase activity and thiolester hydrolase activity. Predicted to be involved in macromolecule depalmitoylation. Predicted to be active in lysosome. Orthologous to human PPT2 (palmitoyl-protein thioesterase 2); PARTICIPATES IN fatty acid elongation pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

lysosomal thioesterase PPT2; PPT-2

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PPT2 (palmitoyl-protein thioesterase 2)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Ppt2 (palmitoyl-protein thioesterase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ppt2 (palmitoyl-protein thioesterase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PPT2 (palmitoyl-protein thioesterase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PPT2 (palmitoyl-protein thioesterase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	LOC101974337 (lysosomal thioesterase PPT2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PPT2 (palmitoyl-protein thioesterase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PPT2 (palmitoyl-protein thioesterase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ppt2 (palmitoyl-protein thioesterase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	PPT2 (palmitoyl-protein thioesterase 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ppt2 (palmitoyl-protein thioesterase 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ppt2 (palmitoyl-protein thioesterase 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Ppt2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ppt2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	4,117,088 - 4,137,382 (+)	NCBI		GRCr8
mRatBN7.2	20	4,112,520 - 4,132,774 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	4,122,463 - 4,132,774 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	4,830,255 - 4,839,271 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	4,192,007 - 4,201,023 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	4,722,932 - 4,731,947 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	4,381,455 - 4,401,638 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	4,381,455 - 4,401,610 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	6,460,811 - 6,481,339 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	4,225,630 - 4,234,653 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	20	4,225,924 - 4,234,876 (+)	NCBI
Celera	20	3,897,484 - 3,906,509 (-)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

neuronal ceroid lipofuscinosis (ISO,ISS)

proteasome-associated autoinflammatory syndrome 1 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-dinitrotoluene (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

ammonium chloride (EXP)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bisphenol A (ISO)

chlorpyrifos (ISO)

ciguatoxin CTX1B (ISO)

cisplatin (ISO)

copper atom (EXP)

copper(0) (EXP)

cyclosporin A (ISO)

cytarabine (ISO)

dexamethasone (ISO)

dibutyl phthalate (EXP)

doxorubicin (ISO)

endosulfan (EXP)

flutamide (EXP)

folic acid (ISO)

indometacin (ISO)

mercury atom (ISO)

mercury(0) (ISO)

mifepristone (ISO)

ouabain (ISO)

paracetamol (EXP)

perfluorooctanoic acid (ISO)

pirinixic acid (EXP)

pregnenolone 16alpha-carbonitrile (EXP)

tetrachloromethane (EXP)

titanium dioxide (ISO)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

macromolecule depalmitoylation (IEA)

Cellular Component

lysosome (IBA,IEA)

Molecular Function

palmitoyl hydrolase activity (IEA,ISO)

thiolester hydrolase activity (IBA,IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

fatty acid elongation pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Characterization of a human MHC class III region gene product with S-thioesterase activity.	Aguado B and Campbell RD, Biochem J 1999 Aug 1;341 ( Pt 3):679-89.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	Disruption of PPT1 or PPT2 causes neuronal ceroid lipofuscinosis in knockout mice.	Gupta P, etal., Proc Natl Acad Sci U S A 2001 Nov 20;98(24):13566-71.
5.	Disruption of PPT2 in mice causes an unusual lysosomal storage disorder with neurovisceral features.	Gupta P, etal., Proc Natl Acad Sci U S A 2003 Oct 14;100(21):12325-30.
6.	The genomic sequence and comparative analysis of the rat major histocompatibility complex.	Hurt P, etal., Genome Res 2004 Apr;14(4):631-9.
7.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
8.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
9.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
10.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
11.	Molecular cloning and expression of palmitoyl-protein thioesterase 2 (PPT2), a homolog of lysosomal palmitoyl-protein thioesterase with a distinct substrate specificity.	Soyombo AA and Hofmann SL, J Biol Chem 1997 Oct 24;272(43):27456-63.
12.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15489334	PMID:23376485	PMID:23533145

Genomics

Comparative Map Data

Ppt2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	4,117,088 - 4,137,382 (+)	NCBI		GRCr8
mRatBN7.2	20	4,112,520 - 4,132,774 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	4,122,463 - 4,132,774 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	4,830,255 - 4,839,271 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	4,192,007 - 4,201,023 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	4,722,932 - 4,731,947 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	4,381,455 - 4,401,638 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	4,381,455 - 4,401,610 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	6,460,811 - 6,481,339 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	4,225,630 - 4,234,653 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	20	4,225,924 - 4,234,876 (+)	NCBI
Celera	20	3,897,484 - 3,906,509 (-)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

PPT2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	32,153,528 - 32,163,675 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	32,153,441 - 32,163,678 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	32,121,305 - 32,131,452 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	32,229,279 - 32,239,430 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	32,229,599 - 32,244,032	NCBI
Celera	6	33,688,341 - 33,698,499 (+)	NCBI		Celera
Cytogenetic Map	6	p21.32	NCBI
HuRef	6	31,875,218 - 31,885,450 (+)	NCBI		HuRef
CHM1_1	6	32,123,732 - 32,133,942 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	32,006,716 - 32,016,865 (+)	NCBI		T2T-CHM13v2.0

Ppt2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	34,835,636 - 34,856,993 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	34,835,636 - 34,847,484 (-)	Ensembl		GRCm39 Ensembl
GRCm38	17	34,616,662 - 34,638,022 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	34,616,662 - 34,628,510 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	34,753,607 - 34,764,042 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	34,224,718 - 34,235,161 (-)	NCBI		MGSCv36	mm8
Celera	17	37,711,835 - 37,722,272 (-)	NCBI		Celera
Cytogenetic Map	17	B1	NCBI
cM Map	17	18.19	NCBI

Ppt2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	619,085 - 630,965 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955437	609,901 - 630,004 (+)	NCBI	ChiLan1.0	ChiLan1.0

PPT2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	46,615,759 - 46,628,033 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	42,577,249 - 42,588,204 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	31,800,096 - 31,811,047 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	32,680,175 - 32,692,199 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	32,680,175 - 32,695,549 (+)	Ensembl	panpan1.1		panPan2

PPT2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	1,549,148 - 1,557,924 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	1,550,719 - 1,557,939 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	1,682,811 - 1,691,619 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	1,687,333 - 1,696,122 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	1,684,169 - 1,696,123 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	1,550,352 - 1,559,159 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	1,615,976 - 1,624,774 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	1,682,277 - 1,691,086 (+)	NCBI		UU_Cfam_GSD_1.0

LOC101974337
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	36,113,543 - 36,126,491 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936727	1,438,593 - 1,446,956 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0 Ensembl	NW_004936727	1,435,166 - 1,437,009 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936727	1,438,593 - 1,447,728 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PPT2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	24,188,030 - 24,200,704 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	24,188,335 - 24,200,707 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	28,009,030 - 28,021,533 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PPT2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	39,867,403 - 39,877,903 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666044	32,053,713 - 32,064,313 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ppt2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	24,155,314 - 24,169,434 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624754	24,156,063 - 24,163,518 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ppt2
132 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	174
Count of miRNA genes:	98
Interacting mature miRNAs:	109
Transcripts:	ENSRNOT00000000497
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354642	Despr15	Despair related QTL 15		0.0027	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	20	1	24159021	Rat
1600382	Edcs3	Endometrial carcinoma susceptibility QTL3	3.5	0.003	uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	20	1	25159026	Rat
2317851	Alcrsp22	Alcohol response QTL 22	3.2	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27339237	Rat
1641893	Alcrsp7	Alcohol response QTL 7			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27339237	Rat
8694189	Bw153	Body weight QTL 153	3.13	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	20	1	29191651	Rat
9590275	Scort15	Serum corticosterone level QTL 15	3.48	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	29191651	Rat
7411650	Foco23	Food consumption QTL 23	20.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	29191651	Rat
9590109	Sffal8	Serum free fatty acids level QTL 8	5.32	0.01	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	20	1	29191651	Rat
9589155	Insul32	Insulin level QTL 32	6.38	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	1	29191651	Rat
6893685	Bw111	Body weight QTL 111	2.7	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	20	1	32578807	Rat
7411668	Foco32	Food consumption QTL 32	8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	36600972	Rat
9590252	Scort12	Serum corticosterone level QTL 12	20.46	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	36600972	Rat
2305926	Iddm37	Insulin dependent diabetes mellitus QTL 37	6		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	20	1527842	46527842	Rat
2306850	Pia40	Pristane induced arthritis QTL 40		0.0001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	20	1527959	5304575	Rat
1641915	Colcr9	Colorectal carcinoma resistance QTL 9	2.97	0.0024	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	20	1530655	46530655	Rat
1598816	Memor12	Memory QTL 12	2.4		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	20	2606836	47606836	Rat
61448	Ciaa1	CIA Autoantibody QTL 1	30	0.001	blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	20	2646395	4597031	Rat
61472	Aia1	Adjuvant induced arthritis QTL 1	18	0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	20	2646395	4597031	Rat
2317057	Aia27	Adjuvant induced arthritis QTL 27	2.83		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	20	2892597	26381954	Rat
1300152	Bp195	Blood pressure QTL 195	3.46		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	20	3621649	9243559	Rat
1331772	Cdexp2	CD45RC expression in CD8 T cells QTL 2	5.7		CD8-positive T cell quantity (VT:0008077)	blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)	20	3621649	10078919	Rat
737973	Pia21	Pristane induced arthritis QTL 21	4.8		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	20	3621656	4606812	Rat
61432	Cia1	Collagen induced arthritis QTL 1			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	20	3621656	14101050	Rat

Markers in Region

D20Yum62

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	4,127,533 - 4,127,683 (-)	MAPPER	mRatBN7.2
Rnor_6.0	20	4,386,543 - 4,386,692	NCBI	Rnor6.0
Rnor_5.0	20	6,465,899 - 6,466,048	UniSTS	Rnor5.0
RGSC_v3.4	20	4,229,412 - 4,229,561	UniSTS	RGSC3.4
Celera	20	3,902,577 - 3,902,730	UniSTS
Cytogenetic Map	20	p12	UniSTS

BF405332

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	4,124,633 - 4,125,169 (-)	MAPPER	mRatBN7.2
Rnor_6.0	20	4,389,057 - 4,389,592	NCBI	Rnor6.0
Rnor_5.0	20	6,468,413 - 6,468,948	UniSTS	Rnor5.0
RGSC_v3.4	20	4,226,512 - 4,227,047	UniSTS	RGSC3.4
Celera	20	3,905,092 - 3,905,627	UniSTS
RH 3.4 Map	20	55.93	UniSTS
Cytogenetic Map	20	p12	UniSTS

RH140482

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	4,132,361 - 4,132,493 (-)	MAPPER	mRatBN7.2
Rnor_6.0	20	4,381,736 - 4,381,867	NCBI	Rnor6.0
Rnor_5.0	20	6,461,092 - 6,461,223	UniSTS	Rnor5.0
RGSC_v3.4	20	4,234,241 - 4,234,372	UniSTS	RGSC3.4
Celera	20	3,897,765 - 3,897,896	UniSTS
Cytogenetic Map	20	p12	UniSTS

RH124332

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	4,132,455 - 4,132,618 (-)	MAPPER	mRatBN7.2
Rnor_6.0	20	4,381,611 - 4,381,773	NCBI	Rnor6.0
Rnor_5.0	20	6,460,967 - 6,461,129	UniSTS	Rnor5.0
RGSC_v3.4	20	4,234,335 - 4,234,497	UniSTS	RGSC3.4
Celera	20	3,897,640 - 3,897,802	UniSTS
Cytogenetic Map	20	p12	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2	35	37	23	18	23		3	66	31	33	9
Low	1	8	20	18	1	18	8	8	8	4	8	2	8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_019367	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256023	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772762	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601766	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601767	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099041	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF061971	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF067790	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC062023	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BX883044	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB736242	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474121	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234132	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000000497 ⟹ ENSRNOP00000000497

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	4,123,739 - 4,132,770 (+)	Ensembl
Rnor_6.0 Ensembl	20	4,381,455 - 4,390,436 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000077655 ⟹ ENSRNOP00000072227

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	20	4,388,909 - 4,390,579 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000080476 ⟹ ENSRNOP00000074687

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	4,123,197 - 4,132,770 (+)	Ensembl
Rnor_6.0 Ensembl	20	4,389,466 - 4,392,343 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000083489 ⟹ ENSRNOP00000074011

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	4,122,463 - 4,132,774 (+)	Ensembl
Rnor_6.0 Ensembl	20	4,389,092 - 4,391,473 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000086544

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	20	4,388,657 - 4,389,523 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000087055

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	20	4,388,635 - 4,389,911 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000090518 ⟹ ENSRNOP00000074652

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	4,123,197 - 4,132,120 (+)	Ensembl
Rnor_6.0 Ensembl	20	4,388,910 - 4,391,402 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000091468 ⟹ ENSRNOP00000074361

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	4,122,985 - 4,132,770 (+)	Ensembl
Rnor_6.0 Ensembl	20	4,381,455 - 4,401,610 (-)	Ensembl

RefSeq Acc Id:

NM_019367 ⟹ NP_062240

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,128,360 - 4,137,382 (+)	NCBI
mRatBN7.2	20	4,123,752 - 4,132,774 (+)	NCBI
Rnor_6.0	20	4,381,455 - 4,390,474 (-)	NCBI
Rnor_5.0	20	6,460,811 - 6,481,339 (-)	NCBI
RGSC_v3.4	20	4,225,630 - 4,234,653 (+)	RGD
Celera	20	3,897,484 - 3,906,509 (-)	RGD

Sequence:

show sequence

CCCGAGCAACCCTCCCCCCCGTCCGTCATCCCCCTGCGCGCTCTCCTTGTCCCCTTTTCCCCCC
GTACCCCGTGGATTCCCGACTAGGTACAAGTAAACAGCTGGCGGAACGAAGCCTCCAGACACAG
GCCAGGTGGGAGCATGCCGGGGCTATGGAGGCAGAGGCTTCCTTCGGCTTGGGCTTTGCTTCTC
CTGCCTTTCCTGCCGCTGCTGTTGCCCGCAGCCCCCGCACCCCACCGCGGGTCCTACAAGCCAG
TGATCGTGGTGCATGGGCTCTTTGACAGTTCATACAGCTTCCGCCACCTGCTGGACTACATCAA
TGAGACACACCCCGGGACTGTGGTGACAGTGCTTGATCTCTTCGATGGCAGAGAGAGCTTGCGA
CCCCTGTGGGAACAGGTTCAAGGGTTCCGAGAGGCTGTGGTCCCCATCATGGAAAAGGCCCCTG
AGGGGGTACACCTCATCTGCTACTCCCAGGGAGGCCTGGTGTGCCGCGCATTGCTGTCTGTCAT
GGATGAGCACAATGTGGATTCCTTCATCTCCCTTTCTTCTCCACAGATGGGACAGTATGGAGAC
ACGGACTATTTGAAGTGGCTGTTCCCTACGTCCATGCGGTCTAACCTCTATCGGATCTGCTATA
GCCCCTGGGGCCAGGAATTTTCCATTTGCAACTACTGGCACGACCCTCACCACGATGACTTGTA
CCTCAACGCCAGCAGCTTTCTGGCCCTCATCAATGGGGAGAGAGACCATCCGAATGCCACTGCA
TGGCGGAAGAACTTCCTTCGTGTGGGCCGTCTGGTGCTGATTGGGGGTCCGGACGATGGAGTCA
TCACTCCCTGGCAATCTAGCTTCTTTGGTTTCTATGATGCCAACGAGACGGTCTTGGAGATGGA
GGAACAGCCGGTGTATCTTCGAGACTCTTTTGGGTTGAAGACTCTCTTGGCCCGGGGGGCCATA
GTGAGATGCCCCATGGCTGGGGTCTCTCACACCACCTGGCACTCCAATCGCACGCTCTATGACG
CTTGCATTGAGCCCTGGCTCTCCTGAAGACGTCCTCAGGGCTCTCCAGGAATTCCCCAGCCCAG
AGATCAAGTGGTGGCCTTCTGGCGTGCCTGTGACCACCTCGTCGCTCCCACACTGCCCCACCTC
CCCACCAGGGCTCCCAAACCCTCCCCTCTGCTCCTCTGTGAATGACAAGTCCTGGTCCCCTACC
TCATGTCCTCACTTGGGGACGTCTCCATGCTCTCCCTTTCTGCCATGGCTGAGGTTGGGAAGCA
AGCACCAGGTTTTTAACTGTGGCTTCACCGCTGCTGCTGTTGCTTCTCCGGGTCTGGCTGTACC
GGAGGAGAACCCAGCCCCTGCCCACCTCAGGGGTCTTCCAGGCCACTCAGGACATTTTTAGCTT
GTTATTCCCATGCCCCTCTTTTCTGTCCCTGTGGCCAGCCTCCCCACCGAGAGGGGCGCCCGTA
CAAGGGGGTTCTGAGGCTCCCCTATGGGGACAGTTCCACTTTTGAAGTGTCAGTGTTGGGGAAT
ATCTGTGGCCTGCAAGGCCCATCTCAGGTTTGGGGATCCCCCAGTCCCTATGATCAGTGTTGGG
GTATCCCCTGGGAGCCTAGGTTCTTTGAGGCCCCAGCCCCTCTTTTAACCACCCTTGAGTGGGT
GGTCCCCGTATTTATAGAAATAAAAGTTCCATTTCCTCAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006256017 ⟹ XP_006256079

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,117,088 - 4,137,382 (+)	NCBI
mRatBN7.2	20	4,112,520 - 4,132,774 (+)	NCBI
Rnor_6.0	20	4,381,455 - 4,401,638 (-)	NCBI
Rnor_5.0	20	6,460,811 - 6,481,339 (-)	NCBI

Sequence:

show sequence

ACTTGGGCAGACGAGGATCTGAAAACCATACAGAAGCAGGATTTGACACCCGCACCAGCATCCA
GGGGTTGCTCCAGGCTAAGTGCGCGTGTCCAGACCACAGGTGGGAGCATGCCGGGGCTATGGAG
GCAGAGGCTTCCTTCGGCTTGGGCTTTGCTTCTCCTGCCTTTCCTGCCGCTGCTGTTGCCCGCA
GCCCCCGCACCCCACCGCGGGTCCTACAAGCCAGTGATCGTGGTGCATGGGCTCTTTGACAGTT
CATACAGCTTCCGCCACCTGCTGGACTACATCAATGAGACACACCCCGGGACTGTGGTGACAGT
GCTTGATCTCTTCGATGGCAGAGAGAGCTTGCGACCCCTGTGGGAACAGGTTCAAGGGTTCCGA
GAGGCTGTGGTCCCCATCATGGAAAAGGCCCCTGAGGGGGTACACCTCATCTGCTACTCCCAGG
GAGGCCTGGTGTGCCGCGCATTGCTGTCTGTCATGGATGAGCACAATGTGGATTCCTTCATCTC
CCTTTCTTCTCCACAGATGGGACAGTATGGAGACACGGACTATTTGAAGTGGCTGTTCCCTACG
TCCATGCGGTCTAACCTCTATCGGATCTGCTATAGCCCCTGGGGCCAGGAATTTTCCATTTGCA
ACTACTGGCACGACCCTCACCACGATGACTTGTACCTCAACGCCAGCAGCTTTCTGGCCCTCAT
CAATGGGGAGAGAGACCATCCGAATGCCACTGCATGGCGGAAGAACTTCCTTCGTGTGGGCCGT
CTGGTGCTGATTGGGGGTCCGGACGATGGAGTCATCACTCCCTGGCAATCTAGCTTCTTTGGTT
TCTATGATGCCAACGAGACGGTCTTGGAGATGGAGGAACAGCCGGTGTATCTTCGAGACTCTTT
TGGGTTGAAGACTCTCTTGGCCCGGGGGGCCATAGTGAGATGCCCCATGGCTGGGGTCTCTCAC
ACCACCTGGCACTCCAATCGCACGCTCTATGACGCTTGCATTGAGCCCTGGCTCTCCTGAAGAC
GTCCTCAGGGCTCTCCAGGAATTCCCCAGCCCAGAGATCAAGTGGTGGCCTTCTGGCGTGCCTG
TGACCACCTCGTCGCTCCCACACTGCCCCACCTCCCCACCAGGGCTCCCAAACCCTCCCCTCTG
CTCCTCTGTGAATGACAAGTCCTGGTCCCCTACCTCATGTCCTCACTTGGGGACGTCTCCATGC
TCTCCCTTTCTGCCATGGCTGAGGTTGGGAAGCAAGCACCAGGTTTTTAACTGTGGCTTCACCG
CTGCTGCTGTTGCTTCTCCGGGTCTGGCTGTACCGGAGGAGAACCCAGCCCCTGCCCACCTCAG
GGGTCTTCCAGGCCACTCAGGACATTTTTAGCTTGTTATTCCCATGCCCCTCTTTTCTGTCCCT
GTGGCCAGCCTCCCCACCGAGAGGGGCGCCCGTACAAGGGGGTTCTGAGGCTCCCCTATGGGGA
CAGTTCCACTTTTGAAGTGTCAGTGTTGGGGAATATCTGTGGCCTGCAAGGCCCATCTCAGGTT
TGGGGATCCCCCAGTCCCTATGATCAGTGTTGGGGTATCCCCTGGGAGCCTAGGTTCTTTGAGG
CCCCAGCCCCTCTTTTAACCACCCTTGAGTGGGTGGTCCCCGTATTTATAGAAATAAAAGTTCC
ATTTCCTCAA

hide sequence

RefSeq Acc Id:

XM_006256019 ⟹ XP_006256081

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,127,767 - 4,137,382 (+)	NCBI
mRatBN7.2	20	4,123,159 - 4,132,774 (+)	NCBI
Rnor_6.0	20	4,381,455 - 4,391,946 (-)	NCBI
Rnor_5.0	20	6,460,811 - 6,481,339 (-)	NCBI

Sequence:

show sequence

AACCGTGCTTGTGGGGGCTGAAGAGTTCTCGGCCCAGTCAGCATTCATAACTGTCCCTTACAGC
ACCCCCTGTCTTCCCCCTCCTCCTGCCCCAAGACGCAGATCCACCCCCGGAGTCAACCCGAGAC
ACAGCGGTGACTTGAAGTCTTTTTATTTGCTTTTTTGTCTCTTGCAAGGGCGTGGGTGGGGAGG
TGGGGTGAGGATAGGCCGATTACAGCGATTACACCAGTTGAGCCTTTTTTTTTTTTTTTTTTTT
CCTTTTTCAGAAACCTAGCAGGAGAATCAGAAATTCCCCACTCTTTTAGGATTTTTCAGCTCTC
TCCTGAGTCCTTAGAAAACTGCTCTAGGAGCCCCTCGGATGGCGTCCTGGAGAGCAGTCTCCAA
GGCCTGGCTTGAACCTGTCCCAGGTCTGAGAAATTTTTACACGGCGACTTCATACCGGTGGTTC
TGGTTTTTCAAGCATGTAGAGATCAGAGGGAACCTTGGACCCATCCCTCCCACATCATCTTCAA
TACACGCTTTAATTTTATTCAGAGAGTTTAGACCGAGCCAAGATCCTGAGTACAGGCCTTGGGT
CTCCGGCAAGAAATCCTGCAAACTTATTTAATTGCTAAGTAAAATCCCTGACGGATAAAGGCCA
TCCCGGGGCGCTCGGGCGCGCGCAGGGGTCACGGGTAGGCCGAGTGTTGCCAGCGCCAGCAGCG
CGGAGGAAGTCTGGCTGCAGTGGCAGGGTCTGTGTCGCCAGCAGCCCGCAGGGATCTGAGCAGC
AGATCGTTGGGGTTGCTCAGGATTTCAGACTGGTGGAAATCCTGTGGTGAGTCCTTGAAGCCTA
CGGGGGCTCCACGCCCATAGAAGGTGGGTCTTGGAGGGTGGGTCGTGGATGCGGAGATAAAAGT
AGGGCCAGAGAAATTGGGTCAGGCTGCACTTCGCTCGAGGGGCCTGGAGGACTCTTGGCGTCTC
CGGAGACAAGGGCACAACACGCACTTCAAAGTGAAGAGTTGTGGGAGCATGCCGGGGCTATGGA
GGCAGAGGCTTCCTTCGGCTTGGGCTTTGCTTCTCCTGCCTTTCCTGCCGCTGCTGTTGCCCGC
AGCCCCCGCACCCCACCGCGGGTCCTACAAGCCAGTGATCGTGGTGCATGGGCTCTTTGACAGT
TCATACAGCTTCCGCCACCTGCTGGACTACATCAATGAGACACACCCCGGGACTGTGGTGACAG
TGCTTGATCTCTTCGATGGCAGAGAGAGCTTGCGACCCCTGTGGGAACAGGTTCAAGGGTTCCG
AGAGGCTGTGGTCCCCATCATGGAAAAGGCCCCTGAGGGGGTACACCTCATCTGCTACTCCCAG
GGAGGCCTGGTGTGCCGCGCATTGCTGTCTGTCATGGATGAGCACAATGTGGATTCCTTCATCT
CCCTTTCTTCTCCACAGATGGGACAGTATGGAGACACGGACTATTTGAAGTGGCTGTTCCCTAC
GTCCATGCGGTCTAACCTCTATCGGATCTGCTATAGCCCCTGGGGCCAGGAATTTTCCATTTGC
AACTACTGGCACGACCCTCACCACGATGACTTGTACCTCAACGCCAGCAGCTTTCTGGCCCTCA
TCAATGGGGAGAGAGACCATCCGAATGCCACTGCATGGCGGAAGAACTTCCTTCGTGTGGGCCG
TCTGGTGCTGATTGGGGGTCCGGACGATGGAGTCATCACTCCCTGGCAATCTAGCTTCTTTGGT
TTCTATGATGCCAACGAGACGGTCTTGGAGATGGAGGAACAGCCGGTGTATCTTCGAGACTCTT
TTGGGTTGAAGACTCTCTTGGCCCGGGGGGCCATAGTGAGATGCCCCATGGCTGGGGTCTCTCA
CACCACCTGGCACTCCAATCGCACGCTCTATGACGCTTGCATTGAGCCCTGGCTCTCCTGAAGA
CGTCCTCAGGGCTCTCCAGGAATTCCCCAGCCCAGAGATCAAGTGGTGGCCTTCTGGCGTGCCT
GTGACCACCTCGTCGCTCCCACACTGCCCCACCTCCCCACCAGGGCTCCCAAACCCTCCCCTCT
GCTCCTCTGTGAATGACAAGTCCTGGTCCCCTACCTCATGTCCTCACTTGGGGACGTCTCCATG
CTCTCCCTTTCTGCCATGGCTGAGGTTGGGAAGCAAGCACCAGGTTTTTAACTGTGGCTTCACC
GCTGCTGCTGTTGCTTCTCCGGGTCTGGCTGTACCGGAGGAGAACCCAGCCCCTGCCCACCTCA
GGGGTCTTCCAGGCCACTCAGGACATTTTTAGCTTGTTATTCCCATGCCCCTCTTTTCTGTCCC
TGTGGCCAGCCTCCCCACCGAGAGGGGCGCCCGTACAAGGGGGTTCTGAGGCTCCCCTATGGGG
ACAGTTCCACTTTTGAAGTGTCAGTGTTGGGGAATATCTGTGGCCTGCAAGGCCCATCTCAGGT
TTGGGGATCCCCCAGTCCCTATGATCAGTGTTGGGGTATCCCCTGGGAGCCTAGGTTCTTTGAG
GCCCCAGCCCCTCTTTTAACCACCCTTGAGTGGGTGGTCCCCGTATTTATAGAAATAAAAGTTC
CATTTCCTCAA

hide sequence

RefSeq Acc Id:

XM_006256020 ⟹ XP_006256082

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,127,028 - 4,137,382 (+)	NCBI
mRatBN7.2	20	4,122,524 - 4,132,774 (+)	NCBI
Rnor_6.0	20	4,381,455 - 4,391,946 (-)	NCBI
Rnor_5.0	20	6,460,811 - 6,481,339 (-)	NCBI

Sequence:

show sequence

AACCGTGCTTGTGGGGGCTGAAGAGTTCTCGGCCCAGTCAGCATTCATAACTGTCCCTTACAGC
ACCCCCTGTCTTCCCCCTCCTCCTGCCCCAAGACGCAGATCCACCCCCGGAGTCAACCCGAGAC
ACAGCGGTGACTTGAAGTCTTTTTATTTGCTTTTTTGTCTCTTGCAAGGGCGTGGGTGGGGAGG
TGGGGTGAGGATAGGCCGATTACAGCGATTACACCAGTTGAGCCTTTTTTTTTTTTTTTTTTTT
CCTTTTTCAGAAACCTAGCAGGAGAATCAGAAATTCCCCACTCTTTTAGGATTTTTCAGCTCTC
TCCTGAGTCCTTAGAAAACTGCTCTAGGAGCCCCTCGGATGGCGTCCTGGAGAGCAGTCTCCAA
GGCCTGGCTTGAACCTGTCCCAGGTCTGAGAAATTTTTACACGGCGACTTCATACCGGTGGTTC
TGGTTTTTCAAGCATGTAGAGATCAGAGGGAACCTTGGACCCATCCCTCCCACATCATCTTCAA
TACACGCTTTAATTTTATTCAGAGAGTTTAGACCGAGCCAAGATCCTGAGTACAGGCCTTGGGT
CTCCGGCAAGAAATCCTGCAAACTTATTTAATTGCTAAGTAAAATCCCTGACGGATAAAGGCCA
TCCCGGGGCGCTCGGGCGCGCGCAGGGGTCACGGGTAGGCCGAGTGTTGCCAGCGCCAGCAGCG
CGGAGGAAGTCTGGCTGCAGTGGCAGGGTCTGTGTCGCCAGCAGCCCGCAGGGATCTGAGCAGC
AGATCGTTGGGGTTGCTCAGGATTTCAGACTGGTGGAAATCCTGTGGTGAGTCCTTGAAGCCTA
CGGGGGCTCCACGCCCATAGAAGGTGGGAGCATGCCGGGGCTATGGAGGCAGAGGCTTCCTTCG
GCTTGGGCTTTGCTTCTCCTGCCTTTCCTGCCGCTGCTGTTGCCCGCAGCCCCCGCACCCCACC
GCGGGTCCTACAAGCCAGTGATCGTGGTGCATGGGCTCTTTGACAGTTCATACAGCTTCCGCCA
CCTGCTGGACTACATCAATGAGACACACCCCGGGACTGTGGTGACAGTGCTTGATCTCTTCGAT
GGCAGAGAGAGCTTGCGACCCCTGTGGGAACAGGTTCAAGGGTTCCGAGAGGCTGTGGTCCCCA
TCATGGAAAAGGCCCCTGAGGGGGTACACCTCATCTGCTACTCCCAGGGAGGCCTGGTGTGCCG
CGCATTGCTGTCTGTCATGGATGAGCACAATGTGGATTCCTTCATCTCCCTTTCTTCTCCACAG
ATGGGACAGTATGGAGACACGGACTATTTGAAGTGGCTGTTCCCTACGTCCATGCGGTCTAACC
TCTATCGGATCTGCTATAGCCCCTGGGGCCAGGAATTTTCCATTTGCAACTACTGGCACGACCC
TCACCACGATGACTTGTACCTCAACGCCAGCAGCTTTCTGGCCCTCATCAATGGGGAGAGAGAC
CATCCGAATGCCACTGCATGGCGGAAGAACTTCCTTCGTGTGGGCCGTCTGGTGCTGATTGGGG
GTCCGGACGATGGAGTCATCACTCCCTGGCAATCTAGCTTCTTTGGTTTCTATGATGCCAACGA
GACGGTCTTGGAGATGGAGGAACAGCCGGTGTATCTTCGAGACTCTTTTGGGTTGAAGACTCTC
TTGGCCCGGGGGGCCATAGTGAGATGCCCCATGGCTGGGGTCTCTCACACCACCTGGCACTCCA
ATCGCACGCTCTATGACGCTTGCATTGAGCCCTGGCTCTCCTGAAGACGTCCTCAGGGCTCTCC
AGGAATTCCCCAGCCCAGAGATCAAGTGGTGGCCTTCTGGCGTGCCTGTGACCACCTCGTCGCT
CCCACACTGCCCCACCTCCCCACCAGGGCTCCCAAACCCTCCCCTCTGCTCCTCTGTGAATGAC
AAGTCCTGGTCCCCTACCTCATGTCCTCACTTGGGGACGTCTCCATGCTCTCCCTTTCTGCCAT
GGCTGAGGTTGGGAAGCAAGCACCAGGTTTTTAACTGTGGCTTCACCGCTGCTGCTGTTGCTTC
TCCGGGTCTGGCTGTACCGGAGGAGAACCCAGCCCCTGCCCACCTCAGGGGTCTTCCAGGCCAC
TCAGGACATTTTTAGCTTGTTATTCCCATGCCCCTCTTTTCTGTCCCTGTGGCCAGCCTCCCCA
CCGAGAGGGGCGCCCGTACAAGGGGGTTCTGAGGCTCCCCTATGGGGACAGTTCCACTTTTGAA
GTGTCAGTGTTGGGGAATATCTGTGGCCTGCAAGGCCCATCTCAGGTTTGGGGATCCCCCAGTC
CCTATGATCAGTGTTGGGGTATCCCCTGGGAGCCTAGGTTCTTTGAGGCCCCAGCCCCTCTTTT
AACCACCCTTGAGTGGGTGGTCCCCGTATTTATAGAAATAAAAGTTCCATTTCCTCAA

hide sequence

RefSeq Acc Id:

XM_006256022 ⟹ XP_006256084

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,127,028 - 4,137,382 (+)	NCBI
mRatBN7.2	20	4,122,524 - 4,132,774 (+)	NCBI
Rnor_6.0	20	4,381,455 - 4,391,945 (-)	NCBI
Rnor_5.0	20	6,460,811 - 6,481,339 (-)	NCBI

Sequence:

show sequence

ACCGTGCTTGTGGGGGCTGAAGAGTTCTCGGCCCAGTCAGCATTCATAACTGTCCCTTACAGCA
CCCCCTGTCTTCCCCCTCCTCCTGCCCCAAGACGCAGATCCACCCCCGGAGTCAACCCGAGACA
CAGCGGTGACTTGAAGTCTTTTTATTTGCTTTTTTGTCTCTTGCAAGGGCGTGGGTGGGGAGGT
GGGGTGAGGATAGGCCGATTACAGCGATTACACCAGTTGAGCCTTTTTTTTTTTTTTTTTTTTC
CTTTTTCAGAAACCTAGCAGGAGAATCAGAAATTCCCCACTCTTTTAGGATTTTTCAGCTCTCT
CCTGAGTCCTTAGAAAACTGCTCTAGGAGCCCCTCGGATGGCGTCCTGGAGAGCAGTCTCCAAG
GCCTGGCTTGAACCTGTCCCAGGTCTGAGAAATTTTTACACGGCGACTTCATACCGGTGGTTCT
GGTTTTTCAAGCATGTAGAGATCAGAGGGAACCTTGGACCCATCCCTCCCACATCATCTTCAAT
ACACGCTTTAATTTTATTCAGAGAGTTTAGACCGAGCCAAGATCCTGAGTACAGGCCTTGGGTC
TCCGGCAAGAAATCCTGCAAACTTATTTAATTGCTAAGTAAAATCCCTGACGGATAAAGGCCAT
CCCGGGGCGCTCGGGCGCGCGCAGGGGTCACGGGTAGGCCGAGTGTTGCCAGCGCCAGCAGCGC
GGAGGAAGTCTGGCTGCAGTGGCAGGGTCTGTGTCGCCAGCAGCCCGCAGGGATCTGAGCAGCA
GATCGTTGGGGTTGCTCAGGATTTCAGACTGGTGGAAATCCTGTGGTGGGAGCATGCCGGGGCT
ATGGAGGCAGAGGCTTCCTTCGGCTTGGGCTTTGCTTCTCCTGCCTTTCCTGCCGCTGCTGTTG
CCCGCAGCCCCCGCACCCCACCGCGGGTCCTACAAGCCAGTGATCGTGGTGCATGGGCTCTTTG
ACAGTTCATACAGCTTCCGCCACCTGCTGGACTACATCAATGAGACACACCCCGGGACTGTGGT
GACAGTGCTTGATCTCTTCGATGGCAGAGAGAGCTTGCGACCCCTGTGGGAACAGGTTCAAGGG
TTCCGAGAGGCTGTGGTCCCCATCATGGAAAAGGCCCCTGAGGGGGTACACCTCATCTGCTACT
CCCAGGGAGGCCTGGTGTGCCGCGCATTGCTGTCTGTCATGGATGAGCACAATGTGGATTCCTT
CATCTCCCTTTCTTCTCCACAGATGGGACAGTATGGAGACACGGACTATTTGAAGTGGCTGTTC
CCTACGTCCATGCGGTCTAACCTCTATCGGATCTGCTATAGCCCCTGGGGCCAGGAATTTTCCA
TTTGCAACTACTGGCACGACCCTCACCACGATGACTTGTACCTCAACGCCAGCAGCTTTCTGGC
CCTCATCAATGGGGAGAGAGACCATCCGAATGCCACTGCATGGCGGAAGAACTTCCTTCGTGTG
GGCCGTCTGGTGCTGATTGGGGGTCCGGACGATGGAGTCATCACTCCCTGGCAATCTAGCTTCT
TTGGTTTCTATGATGCCAACGAGACGGTCTTGGAGATGGAGGAACAGCCGGTGTATCTTCGAGA
CTCTTTTGGGTTGAAGACTCTCTTGGCCCGGGGGGCCATAGTGAGATGCCCCATGGCTGGGGTC
TCTCACACCACCTGGCACTCCAATCGCACGCTCTATGACGCTTGCATTGAGCCCTGGCTCTCCT
GAAGACGTCCTCAGGGCTCTCCAGGAATTCCCCAGCCCAGAGATCAAGTGGTGGCCTTCTGGCG
TGCCTGTGACCACCTCGTCGCTCCCACACTGCCCCACCTCCCCACCAGGGCTCCCAAACCCTCC
CCTCTGCTCCTCTGTGAATGACAAGTCCTGGTCCCCTACCTCATGTCCTCACTTGGGGACGTCT
CCATGCTCTCCCTTTCTGCCATGGCTGAGGTTGGGAAGCAAGCACCAGGTTTTTAACTGTGGCT
TCACCGCTGCTGCTGTTGCTTCTCCGGGTCTGGCTGTACCGGAGGAGAACCCAGCCCCTGCCCA
CCTCAGGGGTCTTCCAGGCCACTCAGGACATTTTTAGCTTGTTATTCCCATGCCCCTCTTTTCT
GTCCCTGTGGCCAGCCTCCCCACCGAGAGGGGCGCCCGTACAAGGGGGTTCTGAGGCTCCCCTA
TGGGGACAGTTCCACTTTTGAAGTGTCAGTGTTGGGGAATATCTGTGGCCTGCAAGGCCCATCT
CAGGTTTGGGGATCCCCCAGTCCCTATGATCAGTGTTGGGGTATCCCCTGGGAGCCTAGGTTCT
TTGAGGCCCCAGCCCCTCTTTTAACCACCCTTGAGTGGGTGGTCCCCGTATTTATAGAAATAAA
AGTTCCATTTCCTCAA

hide sequence

RefSeq Acc Id:

XM_006256023 ⟹ XP_006256085

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,126,472 - 4,137,382 (+)	NCBI
mRatBN7.2	20	4,121,864 - 4,132,774 (+)	NCBI
Rnor_6.0	20	4,381,455 - 4,392,550 (-)	NCBI
Rnor_5.0	20	6,460,811 - 6,481,339 (-)	NCBI

Sequence:

show sequence

AAGAGCTTCCCCAACTCGGTTTCTGTCTGCTCCTGACCACCTCTTTCCTTCTCTCACCCTGGCA
TTCAAGCCCCCAGTTTAGGCTCCCTTGGCGTTGTCATGGAAACCGGGAGGCAAGACCAGGCAAG
GCGGGTGGGACTAAGAGAAGGAGGGAGGGAGAGAGAAATCTCTAGAGTCTCTCCCGCAAAGACT
CGCTGTAGTGATTATATTGAGGGAAGAAGCCAGCTCAATGGAATTACCACACTTATCTCCAGAC
CCTGTTTAACCAGACCCTGCTCACCCAAGGGGTTTTTTTTTTTCCCTTTGCTTCCCTCAGAACT
TCCTGCAAGACAGTTCTAGGTTTCTCCGGGTAGAGACAGAACCAGGTGTGAGAGAGAACTGTAC
AAAGGATGGGAACCAAGAGGGTCTGAAAGACCCCCAGATATACAGCCTGGGCCTGCCCTCCTAG
CAACAGAGAGAGGTGGGAGCATGCCGGGGCTATGGAGGCAGAGGCTTCCTTCGGCTTGGGCTTT
GCTTCTCCTGCCTTTCCTGCCGCTGCTGTTGCCCGCAGCCCCCGCACCCCACCGCGGGTCCTAC
AAGCCAGTGATCGTGGTGCATGGGCTCTTTGACAGTTCATACAGCTTCCGCCACCTGCTGGACT
ACATCAATGAGACACACCCCGGGACTGTGGTGACAGTGCTTGATCTCTTCGATGGCAGAGAGAG
CTTGCGACCCCTGTGGGAACAGGTTCAAGGGTTCCGAGAGGCTGTGGTCCCCATCATGGAAAAG
GCCCCTGAGGGGGTACACCTCATCTGCTACTCCCAGGGAGGCCTGGTGTGCCGCGCATTGCTGT
CTGTCATGGATGAGCACAATGTGGATTCCTTCATCTCCCTTTCTTCTCCACAGATGGGACAGTA
TGGAGACACGGACTATTTGAAGTGGCTGTTCCCTACGTCCATGCGGTCTAACCTCTATCGGATC
TGCTATAGCCCCTGGGGCCAGGAATTTTCCATTTGCAACTACTGGCACGACCCTCACCACGATG
ACTTGTACCTCAACGCCAGCAGCTTTCTGGCCCTCATCAATGGGGAGAGAGACCATCCGAATGC
CACTGCATGGCGGAAGAACTTCCTTCGTGTGGGCCGTCTGGTGCTGATTGGGGGTCCGGACGAT
GGAGTCATCACTCCCTGGCAATCTAGCTTCTTTGGTTTCTATGATGCCAACGAGACGGTCTTGG
AGATGGAGGAACAGCCGGTGTATCTTCGAGACTCTTTTGGGTTGAAGACTCTCTTGGCCCGGGG
GGCCATAGTGAGATGCCCCATGGCTGGGGTCTCTCACACCACCTGGCACTCCAATCGCACGCTC
TATGACGCTTGCATTGAGCCCTGGCTCTCCTGAAGACGTCCTCAGGGCTCTCCAGGAATTCCCC
AGCCCAGAGATCAAGTGGTGGCCTTCTGGCGTGCCTGTGACCACCTCGTCGCTCCCACACTGCC
CCACCTCCCCACCAGGGCTCCCAAACCCTCCCCTCTGCTCCTCTGTGAATGACAAGTCCTGGTC
CCCTACCTCATGTCCTCACTTGGGGACGTCTCCATGCTCTCCCTTTCTGCCATGGCTGAGGTTG
GGAAGCAAGCACCAGGTTTTTAACTGTGGCTTCACCGCTGCTGCTGTTGCTTCTCCGGGTCTGG
CTGTACCGGAGGAGAACCCAGCCCCTGCCCACCTCAGGGGTCTTCCAGGCCACTCAGGACATTT
TTAGCTTGTTATTCCCATGCCCCTCTTTTCTGTCCCTGTGGCCAGCCTCCCCACCGAGAGGGGC
GCCCGTACAAGGGGGTTCTGAGGCTCCCCTATGGGGACAGTTCCACTTTTGAAGTGTCAGTGTT
GGGGAATATCTGTGGCCTGCAAGGCCCATCTCAGGTTTGGGGATCCCCCAGTCCCTATGATCAG
TGTTGGGGTATCCCCTGGGAGCCTAGGTTCTTTGAGGCCCCAGCCCCTCTTTTAACCACCCTTG
AGTGGGTGGTCCCCGTATTTATAGAAATAAAAGTTCCATTTCCTCAA

hide sequence

RefSeq Acc Id:

XM_008772762 ⟹ XP_008770984

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,128,522 - 4,137,382 (+)	NCBI
mRatBN7.2	20	4,123,909 - 4,132,774 (+)	NCBI
Rnor_6.0	20	4,381,455 - 4,391,946 (-)	NCBI

Sequence:

show sequence

AACCGTGCTTGTGGGGGCTGAAGAGTTCTCGGCCCAGTCAGCATTCATAACTGTCCCTTACAGC
ACCCCCTGTCTTCCCCCTCCTCCTGCCCCAAGACGCAGATCCACCCCCGGAGTCAACCCGAGAC
ACAGCGGTGACTTGAAGTCTTTTTATTTGCTTTTTTGTCTCTTGCAAGGGCGTGGGTGGGGAGG
TGGGGTGAGGATAGGCCGATTACAGCGATTACACCAGTTGAGCCTTTTTTTTTTTTTTTTTTTT
CCTTTTTCAGAAACCTAGCAGGAGAATCAGAAATTCCCCACTCTTTTAGGATTTTTCAGCTCTC
TCCTGAGTCCTTAGAAAACTGCTCTAGGAGCCCCTCGGATGGCGTCCTGGAGAGCAGTCTCCAA
GGCCTGGCTTGAACCTGTCCCAGGTCTGAGAAATTTTTACACGGCGACTTCATACCGGTGGTTC
TGGTTTTTCAAGCATGTAGAGATCAGAGGGAACCTTGGACCCATCCCTCCCACATCATCTTCAA
TACACGCTTTAATTTTATTCAGAGAGTTTAGACCGAGCCAAGATCCTGAGTACAGGCCTTGGGT
CTCCGGCAAGAAATCCTGCAAACTTATTTAATTGCTAAGTAAAATCCCTGACGGATAAAGGCCA
TCCCGGGGCGCTCGGGCGCGCGCAGGGGTCACGGGTAGGCCGAGTGTTGCCAGCGCCAGCAGCG
CGGAGGAAGTCTGGCTGCAGTGGCAGGGTCTGTGTCGCCAGCAGCCCGCAGGGATCTGAGCAGC
AGATCGTTGGGGTTGCTCAGGATTTCAGACTGGTGGAAATCCTGTGGTGAGTCCTTGAAGCCTA
CGGGGGCTCCACGCCCATAGAAGGTGGGTCTTGGAGGGTGGGTCGTGGATGCGGAGATAAAAGT
AGGGCCAGAGAAATTGGGTCAGGCTGCACTTCGCTCGAGGGGCCTGGAGGACTCTTGGCGTCTC
CGGAGACAAGGGCACAACACGCACTTCAAAGTGAAGAGTTGTAAGGCGCTGATCCGGAGCGGGA
GGGCAGGCAGGAGTGGGAAGAGGGGCTCTCCAGCTGCGGTCGGCCTGGCACTCAGGCCTGGCAC
TCAGGCCTGCCACAAGCCAGGCGTCCAGCGATAAAGTGGGAATCGCCTTTCAGCCAGTCCTAAC
CTCCCCCTTCGCACGTCCTCTTGGACTCTGCTGAGAAGCCAGAAAGCCTGGACTTAAGAGTGGG
AAGCATCAAAGAGGGGACGTTGCACCCCTGGGTGGCTGAATACAGCTGGAGGTGCGAAACCTTC
TTTAGATACCCGGGATTATCTTTTCTGCCGTTGCCTCTCCCCATTCGGCCAAATGGATCGCTCC
GTCTATTTCCTCCCCAGTTCTTTGGGTGCAATGGAATGTTCCATTGCCCCTCCGGTCCGCTGTC
CGCGTTGCAGGGGACGCTCGCCCTGTTGCCAGGGAAAGCCCCGGACGTGACGGCTTTGCGCGAC
CCCGAGCAACCCTCCCCCCCGTCCGTCATCCCCCTGCGCGCTCTCCTTGTCCCCTTTTCCCCCC
GTACCCCGTGGATTCCCGACTAGGTACAAGTAAACAGCTGGCGGAACGAAGCCTCCAGACACAG
GCCAGGTGGGAGTTTCCACTCTCTGTGTGTACTGGGCCTCTGTTCCCTGGTCTTTGCAGATCTC
GGAGTAGTGCATGGTCGAGGTGATGCTTAAGGAAGATCCTGGGCCTTGGGACCAAGTCCCTTGA
GCGCCAAGTTGGGGGCGGGACTTAGGGTGGGAGCATGCCGGGGCTATGGAGGCAGAGGCTTCCT
TCGGCTTGGGCTTTGCTTCTCCTGCCTTTCCTGCCGCTGCTGTTGCCCGCAGCCCCCGCACCCC
ACCGCGGGTCCTACAAGCCAGTGATCGTGGTGCATGGGCTCTTTGACAGTTCATACAGCTTCCG
CCACCTGCTGGACTACATCAATGAGACACACCCCGGGACTGTGGTGACAGTGCTTGATCTCTTC
GATGGCAGAGAGAGCTTGCGACCCCTGTGGGAACAGGTTCAAGGGTTCCGAGAGGCTGTGGTCC
CCATCATGGAAAAGGCCCCTGAGGGGGTACACCTCATCTGCTACTCCCAGGGAGGCCTGGTGTG
CCGCGCATTGCTGTCTGTCATGGATGAGCACAATGTGGATTCCTTCATCTCCCTTTCTTCTCCA
CAGATGGGACAGTATGGAGACACGGACTATTTGAAGTGGCTGTTCCCTACGTCCATGCGGTCTA
ACCTCTATCGGATCTGCTATAGCCCCTGGGGCCAGGAATTTTCCATTTGCAACTACTGGCACGA
CCCTCACCACGATGACTTGTACCTCAACGCCAGCAGCTTTCTGGCCCTCATCAATGGGGAGAGA
GACCATCCGAATGCCACTGCATGGCGGAAGAACTTCCTTCGTGTGGGCCGTCTGGTGCTGATTG
GGGGTCCGGACGATGGAGTCATCACTCCCTGGCAATCTAGCTTCTTTGGTTTCTATGATGCCAA
CGAGACGGTCTTGGAGATGGAGGAACAGCCGGTGTATCTTCGAGACTCTTTTGGGTTGAAGACT
CTCTTGGCCCGGGGGGCCATAGTGAGATGCCCCATGGCTGGGGTCTCTCACACCACCTGGCACT
CCAATCGCACGCTCTATGACGCTTGCATTGAGCCCTGGCTCTCCTGAAGACGTCCTCAGGGCTC
TCCAGGAATTCCCCAGCCCAGAGATCAAGTGGTGGCCTTCTGGCGTGCCTGTGACCACCTCGTC
GCTCCCACACTGCCCCACCTCCCCACCAGGGCTCCCAAACCCTCCCCTCTGCTCCTCTGTGAAT
GACAAGTCCTGGTCCCCTACCTCATGTCCTCACTTGGGGACGTCTCCATGCTCTCCCTTTCTGC
CATGGCTGAGGTTGGGAAGCAAGCACCAGGTTTTTAACTGTGGCTTCACCGCTGCTGCTGTTGC
TTCTCCGGGTCTGGCTGTACCGGAGGAGAACCCAGCCCCTGCCCACCTCAGGGGTCTTCCAGGC
CACTCAGGACATTTTTAGCTTGTTATTCCCATGCCCCTCTTTTCTGTCCCTGTGGCCAGCCTCC
CCACCGAGAGGGGCGCCCGTACAAGGGGGTTCTGAGGCTCCCCTATGGGGACAGTTCCACTTTT
GAAGTGTCAGTGTTGGGGAATATCTGTGGCCTGCAAGGCCCATCTCAGGTTTGGGGATCCCCCA
GTCCCTATGATCAGTGTTGGGGTATCCCCTGGGAGCCTAGGTTCTTTGAGGCCCCAGCCCCTCT
TTTAACCACCCTTGAGTGGGTGGTCCCCGTATTTATAGAAATAAAAGTTCCATTTCCTCAA

hide sequence

RefSeq Acc Id:

XM_039099041 ⟹ XP_038954969

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,117,181 - 4,137,382 (+)	NCBI
mRatBN7.2	20	4,112,566 - 4,132,774 (+)	NCBI

RefSeq Acc Id:

XM_039099045 ⟹ XP_038954973

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,128,876 - 4,137,382 (+)	NCBI
mRatBN7.2	20	4,121,864 - 4,132,774 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_062240	(Get FASTA)	NCBI Sequence Viewer
	XP_006256079	(Get FASTA)	NCBI Sequence Viewer
	XP_006256081	(Get FASTA)	NCBI Sequence Viewer
	XP_006256082	(Get FASTA)	NCBI Sequence Viewer
	XP_006256084	(Get FASTA)	NCBI Sequence Viewer
	XP_006256085	(Get FASTA)	NCBI Sequence Viewer
	XP_008770984	(Get FASTA)	NCBI Sequence Viewer
	XP_038954969	(Get FASTA)	NCBI Sequence Viewer
	XP_038954973	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC16003	(Get FASTA)	NCBI Sequence Viewer
	AAC19366	(Get FASTA)	NCBI Sequence Viewer
	AAH62023	(Get FASTA)	NCBI Sequence Viewer
	CAE83963	(Get FASTA)	NCBI Sequence Viewer
	EDL83408	(Get FASTA)	NCBI Sequence Viewer
	EDL83409	(Get FASTA)	NCBI Sequence Viewer
	EDL83410	(Get FASTA)	NCBI Sequence Viewer
	EDL83411	(Get FASTA)	NCBI Sequence Viewer
	EDL83412	(Get FASTA)	NCBI Sequence Viewer
	EDL83413	(Get FASTA)	NCBI Sequence Viewer
	EDL83414	(Get FASTA)	NCBI Sequence Viewer
	EDL83415	(Get FASTA)	NCBI Sequence Viewer
	EDL83416	(Get FASTA)	NCBI Sequence Viewer
	EDL83417	(Get FASTA)	NCBI Sequence Viewer
	EDL83418	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000000497
	ENSRNOP00000000497.5
	ENSRNOP00000074011.2
	ENSRNOP00000074361
	ENSRNOP00000074361.2
	ENSRNOP00000074652.2
	ENSRNOP00000074687
	ENSRNOP00000074687.2
	ENSRNOP00055008514
	ENSRNOP00060009174
	ENSRNOP00065039317
GenBank Protein	O70489	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_062240 ⟸ NM_019367
- Peptide Label:	precursor
- UniProtKB:	O88500 (UniProtKB/Swiss-Prot), O70489 (UniProtKB/Swiss-Prot), A6KTI0 (UniProtKB/TrEMBL), A0A8L2R8R8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPGLWRQRLPSAWALLLLPFLPLLLPAAPAPHRGSYKPVIVVHGLFDSSYSFRHLLDYINETHP GTVVTVLDLFDGRESLRPLWEQVQGFREAVVPIMEKAPEGVHLICYSQGGLVCRALLSVMDEHN VDSFISLSSPQMGQYGDTDYLKWLFPTSMRSNLYRICYSPWGQEFSICNYWHDPHHDDLYLNAS SFLALINGERDHPNATAWRKNFLRVGRLVLIGGPDDGVITPWQSSFFGFYDANETVLEMEEQPV YLRDSFGLKTLLARGAIVRCPMAGVSHTTWHSNRTLYDACIEPWLS hide sequence

RefSeq Acc Id:	XP_006256079 ⟸ XM_006256017
- Peptide Label:	isoform X1
- UniProtKB:	O88500 (UniProtKB/Swiss-Prot), O70489 (UniProtKB/Swiss-Prot), A6KTI0 (UniProtKB/TrEMBL), A0A8L2R8R8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPGLWRQRLPSAWALLLLPFLPLLLPAAPAPHRGSYKPVIVVHGLFDSSYSFRHLLDYINETHP GTVVTVLDLFDGRESLRPLWEQVQGFREAVVPIMEKAPEGVHLICYSQGGLVCRALLSVMDEHN VDSFISLSSPQMGQYGDTDYLKWLFPTSMRSNLYRICYSPWGQEFSICNYWHDPHHDDLYLNAS SFLALINGERDHPNATAWRKNFLRVGRLVLIGGPDDGVITPWQSSFFGFYDANETVLEMEEQPV YLRDSFGLKTLLARGAIVRCPMAGVSHTTWHSNRTLYDACIEPWLS hide sequence

RefSeq Acc Id:	XP_006256085 ⟸ XM_006256023
- Peptide Label:	isoform X1
- UniProtKB:	O88500 (UniProtKB/Swiss-Prot), O70489 (UniProtKB/Swiss-Prot), A6KTI0 (UniProtKB/TrEMBL), A0A8L2R8R8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPGLWRQRLPSAWALLLLPFLPLLLPAAPAPHRGSYKPVIVVHGLFDSSYSFRHLLDYINETHP GTVVTVLDLFDGRESLRPLWEQVQGFREAVVPIMEKAPEGVHLICYSQGGLVCRALLSVMDEHN VDSFISLSSPQMGQYGDTDYLKWLFPTSMRSNLYRICYSPWGQEFSICNYWHDPHHDDLYLNAS SFLALINGERDHPNATAWRKNFLRVGRLVLIGGPDDGVITPWQSSFFGFYDANETVLEMEEQPV YLRDSFGLKTLLARGAIVRCPMAGVSHTTWHSNRTLYDACIEPWLS hide sequence

RefSeq Acc Id:	XP_006256084 ⟸ XM_006256022
- Peptide Label:	isoform X1
- UniProtKB:	O88500 (UniProtKB/Swiss-Prot), O70489 (UniProtKB/Swiss-Prot), A6KTI0 (UniProtKB/TrEMBL), A0A8L2R8R8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPGLWRQRLPSAWALLLLPFLPLLLPAAPAPHRGSYKPVIVVHGLFDSSYSFRHLLDYINETHP GTVVTVLDLFDGRESLRPLWEQVQGFREAVVPIMEKAPEGVHLICYSQGGLVCRALLSVMDEHN VDSFISLSSPQMGQYGDTDYLKWLFPTSMRSNLYRICYSPWGQEFSICNYWHDPHHDDLYLNAS SFLALINGERDHPNATAWRKNFLRVGRLVLIGGPDDGVITPWQSSFFGFYDANETVLEMEEQPV YLRDSFGLKTLLARGAIVRCPMAGVSHTTWHSNRTLYDACIEPWLS hide sequence

RefSeq Acc Id:	XP_006256082 ⟸ XM_006256020
- Peptide Label:	isoform X1
- UniProtKB:	O88500 (UniProtKB/Swiss-Prot), O70489 (UniProtKB/Swiss-Prot), A6KTI0 (UniProtKB/TrEMBL), A0A8L2R8R8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPGLWRQRLPSAWALLLLPFLPLLLPAAPAPHRGSYKPVIVVHGLFDSSYSFRHLLDYINETHP GTVVTVLDLFDGRESLRPLWEQVQGFREAVVPIMEKAPEGVHLICYSQGGLVCRALLSVMDEHN VDSFISLSSPQMGQYGDTDYLKWLFPTSMRSNLYRICYSPWGQEFSICNYWHDPHHDDLYLNAS SFLALINGERDHPNATAWRKNFLRVGRLVLIGGPDDGVITPWQSSFFGFYDANETVLEMEEQPV YLRDSFGLKTLLARGAIVRCPMAGVSHTTWHSNRTLYDACIEPWLS hide sequence

RefSeq Acc Id:	XP_006256081 ⟸ XM_006256019
- Peptide Label:	isoform X1
- UniProtKB:	O88500 (UniProtKB/Swiss-Prot), O70489 (UniProtKB/Swiss-Prot), A6KTI0 (UniProtKB/TrEMBL), A0A8L2R8R8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPGLWRQRLPSAWALLLLPFLPLLLPAAPAPHRGSYKPVIVVHGLFDSSYSFRHLLDYINETHP GTVVTVLDLFDGRESLRPLWEQVQGFREAVVPIMEKAPEGVHLICYSQGGLVCRALLSVMDEHN VDSFISLSSPQMGQYGDTDYLKWLFPTSMRSNLYRICYSPWGQEFSICNYWHDPHHDDLYLNAS SFLALINGERDHPNATAWRKNFLRVGRLVLIGGPDDGVITPWQSSFFGFYDANETVLEMEEQPV YLRDSFGLKTLLARGAIVRCPMAGVSHTTWHSNRTLYDACIEPWLS hide sequence

RefSeq Acc Id:	XP_008770984 ⟸ XM_008772762
- Peptide Label:	isoform X1
- UniProtKB:	O88500 (UniProtKB/Swiss-Prot), O70489 (UniProtKB/Swiss-Prot), A6KTI0 (UniProtKB/TrEMBL), A0A8L2R8R8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPGLWRQRLPSAWALLLLPFLPLLLPAAPAPHRGSYKPVIVVHGLFDSSYSFRHLLDYINETHP GTVVTVLDLFDGRESLRPLWEQVQGFREAVVPIMEKAPEGVHLICYSQGGLVCRALLSVMDEHN VDSFISLSSPQMGQYGDTDYLKWLFPTSMRSNLYRICYSPWGQEFSICNYWHDPHHDDLYLNAS SFLALINGERDHPNATAWRKNFLRVGRLVLIGGPDDGVITPWQSSFFGFYDANETVLEMEEQPV YLRDSFGLKTLLARGAIVRCPMAGVSHTTWHSNRTLYDACIEPWLS hide sequence

RefSeq Acc Id:

ENSRNOP00000074687 ⟸ ENSRNOT00000080476

RefSeq Acc Id:

ENSRNOP00000000497 ⟸ ENSRNOT00000000497

RefSeq Acc Id:

ENSRNOP00000074652 ⟸ ENSRNOT00000090518

RefSeq Acc Id:

ENSRNOP00000072227 ⟸ ENSRNOT00000077655

RefSeq Acc Id:

ENSRNOP00000074361 ⟸ ENSRNOT00000091468

RefSeq Acc Id:

ENSRNOP00000074011 ⟸ ENSRNOT00000083489

RefSeq Acc Id:	XP_038954969 ⟸ XM_039099041
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038954973 ⟸ XM_039099045
- Peptide Label:	isoform X3

Protein Domains

AB hydrolase-1

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-O70489-F1-model_v2	AlphaFold	O70489	1-302	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701345

Promoter ID:

EPDNEW_R11869

Type:

multiple initiation site

Name:

Ppt2_1

Description:

palmitoyl-protein thioesterase 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R11870

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	20	4,390,439 - 4,390,499	EPDNEW

RGD ID:

13701352

Promoter ID:

EPDNEW_R11870

Type:

single initiation site

Name:

Ppt2_2

Description:

palmitoyl-protein thioesterase 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R11869

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	20	4,391,412 - 4,391,472	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620375	AgrOrtholog
BioCyc Gene	G2FUF-4589	BioCyc
Ensembl Genes	ENSRNOG00000000435	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00055006698	UniProtKB/Swiss-Prot
	ENSRNOG00060007391	UniProtKB/Swiss-Prot
	ENSRNOG00065027782	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000000497	ENTREZGENE
	ENSRNOT00000000497.8	UniProtKB/TrEMBL
	ENSRNOT00000080476	UniProtKB/TrEMBL
	ENSRNOT00000080476.2	UniProtKB/Swiss-Prot
	ENSRNOT00000083489.2	UniProtKB/TrEMBL
	ENSRNOT00000090518.2	UniProtKB/TrEMBL
	ENSRNOT00000091468.2	UniProtKB/TrEMBL
	ENSRNOT00055010930	UniProtKB/Swiss-Prot
	ENSRNOT00060012158	UniProtKB/Swiss-Prot
	ENSRNOT00065047909	UniProtKB/Swiss-Prot
Gene3D-CATH	3.40.50.1820	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:5623515	IMAGE-MGC_LOAD
InterPro	AB_hydrolase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	AB_hydrolase_1	UniProtKB/TrEMBL
	Palm_thioest	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:54398	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:72477	IMAGE-MGC_LOAD
NCBI Gene	54398	ENTREZGENE
PANTHER	PALMITOYL-PROTEIN THIOESTERASE/DOLICHYLDIPHOSPHATASE 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR11247:SF27	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Abhydrolase_1	UniProtKB/TrEMBL
	Palm_thioest	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Ppt2	PhenoGen
PRINTS	PPTHIESTRASE	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000000435	RatGTEx
	ENSRNOG00055006698	RatGTEx
	ENSRNOG00060007391	RatGTEx
	ENSRNOG00065027782	RatGTEx
Superfamily-SCOP	SSF53474	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2K706_RAT	UniProtKB/TrEMBL
	A0A0G2K8P6_RAT	UniProtKB/TrEMBL
	A0A1B0GX57_RAT	UniProtKB/TrEMBL
	A0A8L2Q099_RAT	UniProtKB/TrEMBL
	A0A8L2R8R8	ENTREZGENE, UniProtKB/TrEMBL
	A6KTH8_RAT	UniProtKB/TrEMBL
	A6KTH9_RAT	UniProtKB/TrEMBL
	A6KTI0	ENTREZGENE, UniProtKB/TrEMBL
	A6KTI4_RAT	UniProtKB/TrEMBL
	A6KTI8_RAT	UniProtKB/TrEMBL
	O70489	ENTREZGENE
	O88500	ENTREZGENE
	PPT2_RAT	UniProtKB/Swiss-Prot
UniProt Secondary	O88500	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-02-26	Ppt2	palmitoyl-protein thioesterase 2			Symbol and Name status set to approved	625702	APPROVED
2002-08-07	Ppt2	palmitoyl-protein thioesterase 2			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_mapping	found in the major histocompatibility RT1 complex	1300431
gene_mutations_overexpression	disruption of the mouse homolog causes an atypical lysosomal storage disorder with abnormal viseral findings	731238

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - MGI

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - MGI

Imported Annotations - KEGG (archival)