Ablim1 (actin-binding LIM protein 1) - Rat Genome Database

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Gene: Ablim1 (actin-binding LIM protein 1) Rattus norvegicus
Analyze
Symbol: Ablim1
Name: actin-binding LIM protein 1
RGD ID: 1565768
Description: Predicted to have actin binding activity. Predicted to be involved in plasma membrane bounded cell projection organization and positive regulation of transcription by RNA polymerase II. Predicted to localize to lamellipodium; postsynaptic density; and stress fiber. Orthologous to human ABLIM1 (actin binding LIM protein 1); INTERACTS WITH 4,4'-diaminodiphenylmethane; amphetamine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: LOC102550100; LOC307989; MGC125264; RGD1565768; similar to actin-binding LIM protein 1 long isoform; uncharacterized LOC102550100
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21256,084,293 - 256,372,075 (-)NCBI
Rnor_6.01277,853,877 - 278,043,096 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01285,233,699 - 285,420,807 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41263,380,818 - 263,465,905 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1251,779,866 - 252,069,514 (-)NCBICelera
Cytogenetic Map1q55NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2-methylcholine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-diaminodiphenylmethane  (EXP,ISO)
4,4'-sulfonyldiphenol  (ISO)
8-Br-cAMP  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amphetamine  (EXP)
antirheumatic drug  (ISO)
Aroclor 1254  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
Benzo[k]fluoranthene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
Brodifacoum  (EXP)
butan-1-ol  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
chrysene  (ISO)
cisplatin  (ISO)
cyclosporin A  (ISO)
DDT  (EXP)
diarsenic trioxide  (ISO)
dibenz[a,h]anthracene  (ISO)
diuron  (EXP)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
hydrogen peroxide  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
methamphetamine  (EXP,ISO)
methyl methanesulfonate  (ISO)
mifepristone  (ISO)
mitomycin C  (ISO)
nickel sulfate  (ISO)
ozone  (ISO)
paracetamol  (ISO)
PCB138  (ISO)
phenobarbital  (ISO)
phenytoin  (ISO)
pirinixic acid  (ISO)
poly(I:C)  (EXP)
potassium chromate  (ISO)
potassium dichromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
progesterone  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
succimer  (ISO)
tamoxifen  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (ISO)
tetraphene  (ISO)
thioacetamide  (EXP)
triclosan  (ISO)
triphenyl phosphate  (EXP)
triptonide  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
valproic acid  (EXP)
vincaleukoblastine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function
actin binding  (ISO)
protein binding  (IPI,ISO)

References

Additional References at PubMed
PMID:9245787   PMID:11163266   PMID:12477932   PMID:17114649   PMID:17194709   PMID:21873635   PMID:22684256  


Genomics

Comparative Map Data
Ablim1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21256,084,293 - 256,372,075 (-)NCBI
Rnor_6.01277,853,877 - 278,043,096 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01285,233,699 - 285,420,807 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41263,380,818 - 263,465,905 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1251,779,866 - 252,069,514 (-)NCBICelera
Cytogenetic Map1q55NCBI
ABLIM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl10114,431,113 - 114,768,061 (-)EnsemblGRCh38hg38GRCh38
GRCh3810114,431,110 - 114,821,643 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3710116,190,869 - 116,528,063 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610116,180,859 - 116,434,404 (-)NCBINCBI36hg18NCBI36
Build 3410116,180,859 - 116,276,675NCBI
Celera10109,920,119 - 110,173,614 (-)NCBI
Cytogenetic Map10q25.3NCBI
HuRef10109,817,609 - 110,070,887 (-)NCBIHuRef
CHM1_110116,474,653 - 116,728,179 (-)NCBICHM1_1
Ablim1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391957,021,165 - 57,303,776 (-)NCBIGRCm39mm39
GRCm39 Ensembl1957,021,165 - 57,303,351 (-)Ensembl
GRCm381957,032,733 - 57,315,344 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1957,032,733 - 57,314,919 (-)EnsemblGRCm38mm10GRCm38
MGSCv371957,107,754 - 57,290,522 (-)NCBIGRCm37mm9NCBIm37
MGSCv361957,090,390 - 57,269,282 (-)NCBImm8
Celera1959,226,385 - 59,408,337 (-)NCBICelera
Cytogenetic Map19D2NCBI
cM Map1952.09NCBI
Ablim1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543119,402,023 - 19,683,589 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543119,397,136 - 19,684,574 (-)NCBIChiLan1.0ChiLan1.0
ABLIM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.110114,460,703 - 114,712,858 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10114,465,838 - 114,712,561 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v010111,030,953 - 111,360,527 (-)NCBIMhudiblu_PPA_v0panPan3
ABLIM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12825,260,323 - 25,543,369 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2825,260,873 - 25,545,304 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2825,412,116 - 25,695,587 (-)NCBI
ROS_Cfam_1.02825,794,442 - 26,078,835 (-)NCBI
UMICH_Zoey_3.12825,349,757 - 25,633,749 (-)NCBI
UNSW_CanFamBas_1.02825,364,845 - 25,649,366 (-)NCBI
UU_Cfam_GSD_1.02825,558,277 - 25,842,977 (-)NCBI
Ablim1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721320,654,882 - 20,840,766 (+)NCBI
SpeTri2.0NW_0049364864,720,643 - 4,906,460 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABLIM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14124,760,398 - 125,010,892 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114124,759,811 - 125,108,722 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214135,882,251 - 136,231,438 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ABLIM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19107,298,018 - 107,638,915 (-)NCBI
ChlSab1.1 Ensembl9107,302,821 - 107,524,945 (-)Ensembl
Vero_WHO_p1.0NW_02366604868,532,262 - 68,873,635 (-)NCBI
Ablim1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473731,856,202 - 32,169,116 (+)NCBI

Position Markers
BF386652  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21256,170,210 - 256,170,376 (+)MAPPER
Rnor_6.01277,936,908 - 277,937,073NCBIRnor6.0
Rnor_5.01285,316,207 - 285,316,372UniSTSRnor5.0
RGSC_v3.41263,463,774 - 263,463,939UniSTSRGSC3.4
Celera1251,864,429 - 251,864,594UniSTS
RH 3.4 Map11682.3UniSTS
Cytogenetic Map1q55UniSTS
RH128661  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21256,084,552 - 256,084,741 (+)MAPPER
Rnor_6.01277,854,137 - 277,854,325NCBIRnor6.0
Rnor_5.01285,233,955 - 285,234,143UniSTSRnor5.0
Celera1251,780,126 - 251,780,314UniSTS
RH 3.4 Map11682.4UniSTS
Cytogenetic Map1q55UniSTS
RH129917  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21256,085,891 - 256,086,105 (+)MAPPER
Rnor_6.01277,855,476 - 277,855,689NCBIRnor6.0
Rnor_5.01285,235,294 - 285,235,507UniSTSRnor5.0
Celera1251,781,465 - 251,781,678UniSTS
RH 3.4 Map11680.8UniSTS
Cytogenetic Map1q55UniSTS
RH144593  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21256,130,175 - 256,130,341 (+)MAPPER
Rnor_6.01277,896,927 - 277,897,092NCBIRnor6.0
Rnor_5.01285,276,460 - 285,276,625UniSTSRnor5.0
RGSC_v3.41263,422,224 - 263,422,389UniSTSRGSC3.4
Celera1251,824,391 - 251,824,556UniSTS
RH 3.4 Map11680.4UniSTS
Cytogenetic Map1q55UniSTS
BF387847  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21256,127,756 - 256,127,906 (+)MAPPER
Rnor_6.01277,894,509 - 277,894,658NCBIRnor6.0
Rnor_5.01285,274,042 - 285,274,191UniSTSRnor5.0
RGSC_v3.41263,419,806 - 263,419,955UniSTSRGSC3.4
Celera1251,821,974 - 251,822,123UniSTS
RH 3.4 Map11680.3UniSTS
Cytogenetic Map1q55UniSTS
BF388033  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21256,200,132 - 256,200,306 (+)MAPPER
Rnor_6.01277,966,818 - 277,966,991NCBIRnor6.0
Rnor_5.01285,346,339 - 285,346,512UniSTSRnor5.0
RGSC_v3.41263,494,112 - 263,494,285UniSTSRGSC3.4
Celera1251,894,369 - 251,894,542UniSTS
RH 3.4 Map11677.5UniSTS
Cytogenetic Map1q55UniSTS
BF399361  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21256,084,987 - 256,085,161 (+)MAPPER
Rnor_6.01277,854,572 - 277,854,745NCBIRnor6.0
Rnor_5.01285,234,390 - 285,234,563UniSTSRnor5.0
Celera1251,780,561 - 251,780,734UniSTS
RH 3.4 Map11677.5UniSTS
Cytogenetic Map1q55UniSTS
RH141446  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21256,141,315 - 256,141,497 (+)MAPPER
Rnor_6.01277,908,067 - 277,908,248NCBIRnor6.0
Rnor_5.01285,287,600 - 285,287,781UniSTSRnor5.0
RGSC_v3.41263,433,364 - 263,433,545UniSTSRGSC3.4
Celera1251,835,531 - 251,835,712UniSTS
RH 3.4 Map11678.9UniSTS
Cytogenetic Map1q55UniSTS
AA944848  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21256,138,832 - 256,139,030 (+)MAPPER
Rnor_6.01277,905,584 - 277,905,781NCBIRnor6.0
Rnor_5.01285,285,117 - 285,285,314UniSTSRnor5.0
RGSC_v3.41263,430,881 - 263,431,078UniSTSRGSC3.4
Celera1251,833,048 - 251,833,245UniSTS
RH 3.4 Map11679.4UniSTS
Cytogenetic Map1q55UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70211Niddm24Non-insulin dependent diabetes mellitus QTL 243.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1236795785281795785Rat
631215Stl8Serum triglyceride level QTL 89.270.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1245529606282763074Rat
2302040Pia35Pristane induced arthritis QTL 353.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1236265430281265430Rat
724533Rf51Renal function QTL 515.30.0002kidney plasma flow trait (VT:0005524)renal plasma flow (CMO:0001914)1238830534278228767Rat
724552Glom2Glomerulus QTL 23.30.0001kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)1243272341282763074Rat
734767Niddm57Non-insulin dependent diabetes mellitus QTL 57body mass (VT:0001259)body weight (CMO:0000012)1244401175282365384Rat
734768Niddm59Non-insulin dependent diabetes mellitus QTL 59body mass (VT:0001259)body weight (CMO:0000012)1235850810280850810Rat
734769Niddm58Non-insulin dependent diabetes mellitus QTL 58body mass (VT:0001259)body weight (CMO:0000012)1244992467282365384Rat
631669Iddm9Insulin dependent diabetes mellitus QTL 92.80.039blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1252955158280632620Rat
631690Scl5Serum cholesterol level QTL 52.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1258132568282763074Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1167394665278228889Rat
1581544Rf52Renal function QTL 520.05total urine protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)1252948438281795785Rat
731175Uae20Urinary albumin excretion QTL 203.50.0018urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1241482188281795785Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1191825895279986079Rat
631536Lnnr2Liver neoplastic nodule remodeling QTL 22.90.0005liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)1255728828282763074Rat
1598821Rf55Renal function QTL 556.3renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1238824734279986079Rat
1598839Rf56Renal function QTL 56renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1266793821279986079Rat
631836Stl31Serum triglyceride level QTL 314.640.00000487blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)1259295704282763074Rat
631837Niddm35Non-insulin dependent diabetes mellitus QTL 350.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1258709726281795785Rat
631843Bw116Body weight QTL 1164.10.016abdominal adipose amount (VT:1000220)abdominal fat pad weight (CMO:0000088)1244401175282365384Rat
634313Niddm43Non-insulin dependent diabetes mellitus QTL 43blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1217054291281795785Rat
1600388Niddm67Non-insulin dependent diabetes mellitus QTL 675.840.000004blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1213476630278978026Rat
1600392Bw123Body weight QTL 1230.001body mass (VT:0001259)body weight (CMO:0000012)1244087148282763074Rat
1600395Niddm69Non-insulin dependent diabetes mellitus QTL 694.140.0002blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1213476630278978026Rat
1600396Niddm68Non-insulin dependent diabetes mellitus QTL 684.970.0003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1213476630278978026Rat
1578763Kidm29Kidney mass QTL 293.30.0001kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1196395041282763074Rat
1300108Rf8Renal function QTL 83.75renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1249206242281795785Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1161784169278228889Rat
1354624Cm35Cardiac mass QTL355.7heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1192639698278228889Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1161784169278228889Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1192639698278228889Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1161784169278228889Rat
1549910Bw54Body weight QTL 540.05body mass (VT:0001259)body weight (CMO:0000012)1236795785281795785Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1163796316282763074Rat
1358890Bp259Blood pressure QTL 2593.06arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1230420627282645769Rat
61327Eae7Experimental allergic encephalomyelitis QTL 75.6body mass (VT:0001259)change in body weight (CMO:0002045)1236265430281265430Rat
7387289Uae45Urinary albumin excretion QTL 452.860.0021urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1244148899282763074Rat
10053715Scort24Serum corticosterone level QTL 242.130.0088blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1242302911282763074Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:236
Count of miRNA genes:164
Interacting mature miRNAs:178
Transcripts:ENSRNOT00000018693, ENSRNOT00000067257
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001044394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001372054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001395154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001395155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003753431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC105867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: NM_001044394   ⟹   NP_001037859
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21256,084,297 - 256,172,342 (-)NCBI
RefSeq Acc Id: NM_001372054   ⟹   NP_001358983
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21256,084,297 - 256,276,495 (-)NCBI
RefSeq Acc Id: XM_003753431   ⟹   XP_003753479
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1251,779,866 - 251,970,594 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008774886   ⟹   XP_008773108
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1251,779,866 - 251,950,140 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590287   ⟹   XP_017445776
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1251,779,866 - 251,970,595 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590290   ⟹   XP_017445779
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1251,779,866 - 251,970,595 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590292   ⟹   XP_017445781
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1251,779,866 - 251,970,595 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590293   ⟹   XP_017445782
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1251,779,866 - 251,970,595 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590295   ⟹   XP_017445784
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1251,779,866 - 251,970,595 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590296   ⟹   XP_017445785
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1251,779,866 - 251,970,595 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590299   ⟹   XP_017445788
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1251,779,866 - 251,970,595 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590302   ⟹   XP_017445791
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1251,779,866 - 251,970,594 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590304   ⟹   XP_017445793
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1251,779,866 - 251,970,594 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590308   ⟹   XP_017445797
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1251,779,866 - 251,970,596 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590313   ⟹   XP_017445802
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1251,779,866 - 251,970,594 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590314   ⟹   XP_017445803
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1251,779,866 - 251,970,595 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590315   ⟹   XP_017445804
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1251,779,866 - 251,976,874 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590317   ⟹   XP_017445806
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1251,779,866 - 251,970,594 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590319   ⟹   XP_017445808
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1251,779,866 - 251,970,593 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590320   ⟹   XP_017445809
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1251,779,866 - 251,970,595 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590321   ⟹   XP_017445810
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1251,779,866 - 251,998,457 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590326   ⟹   XP_017445815
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1251,779,866 - 252,069,514 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590327   ⟹   XP_017445816
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1251,779,866 - 251,970,594 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590328   ⟹   XP_017445817
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1251,779,868 - 251,866,626 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590329   ⟹   XP_017445818
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1251,779,868 - 251,866,626 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590338   ⟹   XP_017445827
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1251,779,866 - 251,970,596 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590400   ⟹   XP_017445889
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01277,853,877 - 278,043,096 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590401   ⟹   XP_017445890
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01277,853,877 - 278,043,094 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039110162   ⟹   XP_038966090
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21256,084,293 - 256,372,058 (-)NCBI
RefSeq Acc Id: XM_039110173   ⟹   XP_038966101
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21256,084,298 - 256,372,057 (-)NCBI
RefSeq Acc Id: XM_039110183   ⟹   XP_038966111
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21256,084,298 - 256,372,055 (-)NCBI
RefSeq Acc Id: XM_039110191   ⟹   XP_038966119
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21256,084,298 - 256,304,315 (-)NCBI
RefSeq Acc Id: XM_039110199   ⟹   XP_038966127
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21256,084,298 - 256,256,108 (-)NCBI
RefSeq Acc Id: XM_039110204   ⟹   XP_038966132
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21256,084,298 - 256,372,058 (-)NCBI
RefSeq Acc Id: XM_039110211   ⟹   XP_038966139
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21256,084,298 - 256,372,052 (-)NCBI
RefSeq Acc Id: XM_039110216   ⟹   XP_038966144
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21256,084,298 - 256,372,047 (-)NCBI
RefSeq Acc Id: XM_039110218   ⟹   XP_038966146
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21256,087,843 - 256,372,056 (-)NCBI
RefSeq Acc Id: XM_039110220   ⟹   XP_038966148
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21256,084,298 - 256,372,048 (-)NCBI
RefSeq Acc Id: XM_039110222   ⟹   XP_038966150
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21256,084,298 - 256,372,048 (-)NCBI
RefSeq Acc Id: XM_039110224   ⟹   XP_038966152
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21256,084,298 - 256,372,046 (-)NCBI
RefSeq Acc Id: XM_039110228   ⟹   XP_038966156
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21256,084,298 - 256,372,044 (-)NCBI
RefSeq Acc Id: XM_039110232   ⟹   XP_038966160
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21256,084,298 - 256,230,416 (-)NCBI
RefSeq Acc Id: XM_039110238   ⟹   XP_038966166
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21256,087,843 - 256,372,049 (-)NCBI
RefSeq Acc Id: XM_039110243   ⟹   XP_038966171
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21256,087,843 - 256,230,416 (-)NCBI
RefSeq Acc Id: XM_039110246   ⟹   XP_038966174
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21256,084,298 - 256,230,416 (-)NCBI
RefSeq Acc Id: XM_039110250   ⟹   XP_038966178
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21256,087,843 - 256,372,045 (-)NCBI
RefSeq Acc Id: XM_039110255   ⟹   XP_038966183
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21256,084,298 - 256,230,416 (-)NCBI
RefSeq Acc Id: XM_039110256   ⟹   XP_038966184
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21256,084,298 - 256,230,416 (-)NCBI
RefSeq Acc Id: XM_039110261   ⟹   XP_038966189
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21256,087,843 - 256,372,044 (-)NCBI
RefSeq Acc Id: XM_039110267   ⟹   XP_038966195
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21256,087,843 - 256,230,416 (-)NCBI
RefSeq Acc Id: XM_039110273   ⟹   XP_038966201
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21256,098,058 - 256,372,075 (-)NCBI
RefSeq Acc Id: XM_039110279   ⟹   XP_038966207
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21256,084,298 - 256,178,117 (-)NCBI
RefSeq Acc Id: XM_039110288   ⟹   XP_038966216
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21256,098,058 - 256,372,062 (-)NCBI
RefSeq Acc Id: XM_039110293   ⟹   XP_038966221
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21256,084,298 - 256,178,099 (-)NCBI
RefSeq Acc Id: XM_039110296   ⟹   XP_038966224
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21256,115,564 - 256,372,073 (-)NCBI
RefSeq Acc Id: XM_039110298   ⟹   XP_038966226
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21256,084,298 - 256,175,298 (-)NCBI
RefSeq Acc Id: XM_039110301   ⟹   XP_038966229
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21256,084,298 - 256,172,342 (-)NCBI
RefSeq Acc Id: XM_039110308   ⟹   XP_038966236
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21256,084,293 - 256,276,761 (-)NCBI
RefSeq Acc Id: XM_039110316   ⟹   XP_038966244
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21256,084,293 - 256,275,654 (-)NCBI
RefSeq Acc Id: XM_039110327   ⟹   XP_038966255
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21256,084,293 - 256,276,748 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001037859 (Get FASTA)   NCBI Sequence Viewer  
  NP_001358983 (Get FASTA)   NCBI Sequence Viewer  
  NP_001382083 (Get FASTA)   NCBI Sequence Viewer  
  NP_001382084 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966090 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966101 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966111 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966119 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966127 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966132 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966139 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966144 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966146 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966148 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966150 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966152 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966156 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966160 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966166 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966171 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966174 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966178 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966183 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966184 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966189 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966195 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966201 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966207 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966216 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966221 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966224 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966226 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966229 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966236 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966244 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966255 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI05868 (Get FASTA)   NCBI Sequence Viewer  
  EDL94509 (Get FASTA)   NCBI Sequence Viewer  
  EDL94510 (Get FASTA)   NCBI Sequence Viewer  
  EDL94511 (Get FASTA)   NCBI Sequence Viewer  
  EDL94512 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003753479   ⟸   XM_003753431
- Peptide Label: isoform X20
- Sequence:
RefSeq Acc Id: XP_008773108   ⟸   XM_008774886
- Peptide Label: isoform X21
- Sequence:
RefSeq Acc Id: XP_017445815   ⟸   XM_017590326
- Peptide Label: isoform X22
- Sequence:
RefSeq Acc Id: XP_017445810   ⟸   XM_017590321
- Peptide Label: isoform X19
- Sequence:
RefSeq Acc Id: XP_017445804   ⟸   XM_017590315
- Peptide Label: isoform X15
- Sequence:
RefSeq Acc Id: XP_017445797   ⟸   XM_017590308
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_017445827   ⟸   XM_017590338
- Peptide Label: isoform X26
- Sequence:
RefSeq Acc Id: XP_017445784   ⟸   XM_017590295
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_017445803   ⟸   XM_017590314
- Peptide Label: isoform X14
- Sequence:
RefSeq Acc Id: XP_017445782   ⟸   XM_017590293
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_017445781   ⟸   XM_017590292
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017445809   ⟸   XM_017590320
- Peptide Label: isoform X18
- Sequence:
RefSeq Acc Id: XP_017445788   ⟸   XM_017590299
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_017445785   ⟸   XM_017590296
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_017445779   ⟸   XM_017590290
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017445776   ⟸   XM_017590287
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017445816   ⟸   XM_017590327
- Peptide Label: isoform X23
- Sequence:
RefSeq Acc Id: XP_017445806   ⟸   XM_017590317
- Peptide Label: isoform X16
- Sequence:
RefSeq Acc Id: XP_017445793   ⟸   XM_017590304
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_017445791   ⟸   XM_017590302
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_017445802   ⟸   XM_017590313
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_017445808   ⟸   XM_017590319
- Peptide Label: isoform X17
- Sequence:
RefSeq Acc Id: XP_017445818   ⟸   XM_017590329
- Peptide Label: isoform X25
- Sequence:
RefSeq Acc Id: XP_017445817   ⟸   XM_017590328
- Peptide Label: isoform X24
- Sequence:
RefSeq Acc Id: XP_017445889   ⟸   XM_017590400
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017445890   ⟸   XM_017590401
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_038966090   ⟸   XM_039110162
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038966236   ⟸   XM_039110308
- Peptide Label: isoform X30
RefSeq Acc Id: XP_038966255   ⟸   XM_039110327
- Peptide Label: isoform X32
RefSeq Acc Id: XP_038966244   ⟸   XM_039110316
- Peptide Label: isoform X31
RefSeq Acc Id: NP_001358983   ⟸   NM_001372054
- Peptide Label: isoform 1
RefSeq Acc Id: NP_001037859   ⟸   NM_001044394
- Peptide Label: isoform 2
RefSeq Acc Id: XP_038966132   ⟸   XM_039110204
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038966101   ⟸   XM_039110173
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038966111   ⟸   XM_039110183
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038966139   ⟸   XM_039110211
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038966150   ⟸   XM_039110222
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038966148   ⟸   XM_039110220
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038966144   ⟸   XM_039110216
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038966152   ⟸   XM_039110224
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038966156   ⟸   XM_039110228
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038966119   ⟸   XM_039110191
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038966127   ⟸   XM_039110199
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038966184   ⟸   XM_039110256
- Peptide Label: isoform X20
RefSeq Acc Id: XP_038966183   ⟸   XM_039110255
- Peptide Label: isoform X19
RefSeq Acc Id: XP_038966160   ⟸   XM_039110232
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038966174   ⟸   XM_039110246
- Peptide Label: isoform X17
RefSeq Acc Id: XP_038966207   ⟸   XM_039110279
- Peptide Label: isoform X24
RefSeq Acc Id: XP_038966221   ⟸   XM_039110293
- Peptide Label: isoform X26
RefSeq Acc Id: XP_038966226   ⟸   XM_039110298
- Peptide Label: isoform X28
RefSeq Acc Id: XP_038966229   ⟸   XM_039110301
- Peptide Label: isoform X29
RefSeq Acc Id: XP_038966146   ⟸   XM_039110218
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038966166   ⟸   XM_039110238
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038966178   ⟸   XM_039110250
- Peptide Label: isoform X18
RefSeq Acc Id: XP_038966189   ⟸   XM_039110261
- Peptide Label: isoform X21
RefSeq Acc Id: XP_038966195   ⟸   XM_039110267
- Peptide Label: isoform X22
RefSeq Acc Id: XP_038966171   ⟸   XM_039110243
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038966201   ⟸   XM_039110273
- Peptide Label: isoform X23
RefSeq Acc Id: XP_038966216   ⟸   XM_039110288
- Peptide Label: isoform X25
RefSeq Acc Id: XP_038966224   ⟸   XM_039110296
- Peptide Label: isoform X27
Protein Domains
HP


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565768 AgrOrtholog
Gene3D-CATH 1.10.950.10 UniProtKB/TrEMBL
InterPro ABLIM1 UniProtKB/TrEMBL
  AbLIM_anchor UniProtKB/TrEMBL
  Villin_headpiece UniProtKB/TrEMBL
  Villin_headpiece_dom_sf UniProtKB/TrEMBL
NCBI Gene 307989 ENTREZGENE
PANTHER PTHR24213:SF18 UniProtKB/TrEMBL
Pfam AbLIM_anchor UniProtKB/TrEMBL
  VHP UniProtKB/TrEMBL
PharmGKB ABLIM1 RGD
PhenoGen Ablim1 PhenoGen
PROSITE PS51089 UniProtKB/TrEMBL
SMART VHP UniProtKB/TrEMBL
Superfamily-SCOP VHP UniProtKB/TrEMBL
UniProt Q3KR72_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Ablim1  actin-binding LIM protein 1  LOC102550100  uncharacterized LOC102550100  Data Merged 737654 PROVISIONAL
2013-12-18 LOC102550100  uncharacterized LOC102550100      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 Ablim1  actin-binding LIM protein 1   Ablim1_predicted  actin-binding LIM protein 1 (predicted)  'predicted' is removed 2292626 APPROVED
2006-09-28 Ablim1_predicted  actin-binding LIM protein 1 (predicted)  RGD1565768_predicted  similar to actin-binding LIM protein 1 long isoform (predicted)  Symbol and Name updated to reflect Human and Mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1565768_predicted  similar to actin-binding LIM protein 1 long isoform (predicted)  LOC307989  similar to actin-binding LIM protein 1 long isoform  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC307989  similar to actin-binding LIM protein 1 long isoform      Symbol and Name status set to provisional 70820 PROVISIONAL