Glod5 (glyoxalase domain containing 5)

Gene: Glod5 (glyoxalase domain containing 5) Rattus norvegicus

Analyze

Symbol:

Glod5

Name:

glyoxalase domain containing 5

RGD ID:

1564596

Description:

Orthologous to human GLOD5 (glyoxalase domain containing 5); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; aflatoxin B1.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

glyoxalase domain-containing protein 5; LOC302554; RGD1564596; similar to RIKEN cDNA 2010001H14

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GLOD5 (glyoxalase domain containing 5)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Glod5 (glyoxalase domain containing 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Glod5 (glyoxalase domain containing 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GLOD5 (glyoxalase domain containing 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	GLOD5 (glyoxalase domain containing 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Glod5 (glyoxalase domain containing 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	GLOD5 (glyoxalase domain containing 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	GLOD5 (glyoxalase domain containing 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Glod5 (glyoxalase domain containing 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	RRP1 (ribosomal RNA processing 1)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Glod5 (glyoxalase domain containing 5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	GLOD5 (glyoxalase domain containing 5)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	glod5 (glyoxalase domain containing 5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	glod5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	17,145,936 - 17,160,733 (+)	NCBI		GRCr8
mRatBN7.2	X	14,473,994 - 14,488,797 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	14,473,994 - 14,488,683 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	19,287,411 - 19,302,084 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	20,781,023 - 20,795,686 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	17,046,193 - 17,060,859 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	15,225,645 - 15,240,458 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	15,225,645 - 15,240,329 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	16,006,589 - 16,021,387 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	26,505,715 - 26,520,399 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	X	14,558,775 - 14,573,352 (+)	NCBI		Celera
Cytogenetic Map	X	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

congenital disorder of glycosylation type IIm (ISO)

Diamond-Blackfan anemia (ISO)

genetic disease (ISO)

immune dysregulation-polyendocrinopathy-enteropathy-X-linked syndrome (ISO)

neurodegeneration with brain iron accumulation 5 (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

X-linked epilepsy with variable learning disabilities and behavior disorders (ISO)

X-linked severe congenital neutropenia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

6-propyl-2-thiouracil (EXP)

acrylamide (ISO)

aflatoxin B1 (EXP)

amitrole (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

carbon nanotube (ISO)

carnosic acid (ISO)

chlorpyrifos (ISO)

cobalt dichloride (EXP)

folic acid (ISO)

furan (EXP)

glyphosate (ISO)

methimazole (EXP)

nitrofen (EXP)

oxaliplatin (EXP)

paraquat (EXP)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (ISO)

sulfadimethoxine (EXP)

titanium dioxide (ISO)

topotecan (EXP)

trichloroethene (EXP)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Glod5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	17,145,936 - 17,160,733 (+)	NCBI		GRCr8
mRatBN7.2	X	14,473,994 - 14,488,797 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	14,473,994 - 14,488,683 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	19,287,411 - 19,302,084 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	20,781,023 - 20,795,686 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	17,046,193 - 17,060,859 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	15,225,645 - 15,240,458 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	15,225,645 - 15,240,329 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	16,006,589 - 16,021,387 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	26,505,715 - 26,520,399 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	X	14,558,775 - 14,573,352 (+)	NCBI		Celera
Cytogenetic Map	X	q12	NCBI

GLOD5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	48,761,747 - 48,773,648 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	48,761,747 - 48,773,648 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	48,620,151 - 48,632,064 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	48,508,985 - 48,516,795 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	X	53,031,515 - 53,043,857 (-)	NCBI		Celera
Cytogenetic Map	X	p11.23	NCBI
HuRef	X	46,281,675 - 46,289,876 (+)	NCBI		HuRef
CHM1_1	X	48,651,323 - 48,663,204 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	48,172,222 - 48,184,150 (+)	NCBI		T2T-CHM13v2.0

Glod5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	7,870,440 - 7,884,731 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	7,870,439 - 7,884,731 (-)	Ensembl		GRCm39 Ensembl
GRCm38	X	8,004,201 - 8,018,492 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	8,004,200 - 8,018,492 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	7,581,327 - 7,595,618 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	7,161,160 - 7,175,451 (-)	NCBI		MGSCv36	mm8
Celera	X	3,450,712 - 3,464,719 (+)	NCBI		Celera
Cytogenetic Map	X	A1.1	NCBI
cM Map	X	3.61	NCBI

Glod5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955543	319,985 - 323,393 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955543	320,087 - 321,311 (+)	NCBI	ChiLan1.0	ChiLan1.0

GLOD5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	50,250,748 - 50,263,035 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	50,254,120 - 50,266,407 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	41,060,152 - 41,071,654 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	48,920,747 - 48,932,442 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	48,920,747 - 48,932,442 (+)	Ensembl	panpan1.1		panPan2

GLOD5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	41,967,674 - 41,979,241 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	41,967,812 - 41,979,243 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	16,343,245 - 16,354,675 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	42,103,951 - 42,115,447 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	42,104,009 - 42,115,457 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	42,090,023 - 42,101,685 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	42,078,509 - 42,089,940 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	42,172,427 - 42,184,091 (+)	NCBI		UU_Cfam_GSD_1.0

Glod5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	34,479,155 - 34,491,347 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936721	719,651 - 732,078 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936721	719,660 - 731,800 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GLOD5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	42,877,140 - 42,889,271 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	42,877,034 - 42,889,285 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

GLOD5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	45,888,220 - 45,900,316 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	45,888,509 - 45,900,095 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666076	11,368,482 - 11,380,354 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Glod5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624893	562,330 - 574,594 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624893	562,815 - 570,099 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Glod5
72 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	32
Count of miRNA genes:	26
Interacting mature miRNAs:	31
Transcripts:	ENSRNOT00000008648
Prediction methods:	Miranda, Pita, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
731181	Uae27	Urinary albumin excretion QTL 27	2.7	0.0059	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	X	1	43491017	Rat
634325	Bw13	Body weight QTL 13	0		body mass (VT:0001259)	body weight (CMO:0000012)	X	1447972	20991088	Rat
70165	Bp64	Blood pressure QTL 64	5.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	X	1448129	31706553	Rat
631204	Gluco15	Glucose level QTL 15		0.001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	X	1623715	22646544	Rat
1298071	Edpm12	Estrogen-dependent pituitary mass QTL 12	3.2		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	X	2927898	47927898	Rat
10755455	Coatc13	Coat color QTL 13		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	4406000	49406000	Rat
631666	Iddm5	Insulin dependent diabetes mellitus QTL 5			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	X	4494549	49494549	Rat

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	14			2					23		3
Low		29	49	36	17	36			66	6	23	8
Below cutoff			4	1		1	8	10	8	6	15		8

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106957	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256706	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099630	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474078	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000008648 ⟹ ENSRNOP00000008648

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	14,473,994 - 14,488,683 (+)	Ensembl
Rnor_6.0 Ensembl	X	15,225,645 - 15,240,329 (+)	Ensembl

RefSeq Acc Id:

NM_001106957 ⟹ NP_001100427

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	17,145,936 - 17,160,619 (+)	NCBI
mRatBN7.2	X	14,473,994 - 14,488,683 (+)	NCBI
Rnor_6.0	X	15,225,645 - 15,240,329 (+)	NCBI
Rnor_5.0	X	16,006,589 - 16,021,387 (+)	NCBI
RGSC_v3.4	X	26,505,715 - 26,520,399 (+)	RGD
Celera	X	14,558,775 - 14,573,352 (+)	RGD

Sequence:

show sequence

CACAGAGCCAGCCCCAGCTACCCGCCATGTAGCATTATCTGCCTTCCAGTCTAGCAGTCAGGAT
GTGGGGTCCAACATCTGAGAGTCCGTTATGGAGGACCAGCAGCCAGACCCCTTCCCCGTGTCTT
ATCTGTAGACTTGACCACATTGTGATGACCGTAAAGAACATTGAAGACACCACCATGTTCTATT
CCAAGATCCTGGGCATGGAGGTCACTACTTTCAAGGGGGACCGGAAAGCACTGTGTTTCGGAGA
CCAAAAATTTAACCTGCACGAGGTGGGAAAGGAATTTGATCCCAAAGCAGCCCACCCCATTCCA
GGCTCCTTGGACGTTTGTTTGATCACAGAGACGCCCCTGGAGGAGGTGATGAAGCGCCTTAAGG
CTTTTGATGTCCCCATTGAAGAGGGCCCAGTCTCCAGAACAGGAGCAAAGGGGCCTATTCTGTC
CATCTACTTCCGAGATCCTGACAGAAATCTCATTGAGGTGTCTAACTATGTCACCGCATGATTG
AGACTGGCCTCCCTCCATTCTGTTCTACAAAATGTCATCTTACTCCTAATTTCTTACATATCCC
CAGAGACTTCTAAAAACTGAGAACTTGGACAAAGGGGACCTAAGACAGGTTTATGTGCAAACTT
TTGTGTCTGGAGATCCTCCATTCAAGCTACTCCAATACATGACAAATCTCTCTTGTCTC

hide sequence

RefSeq Acc Id:

XM_006256706 ⟹ XP_006256768

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	17,156,636 - 17,160,733 (+)	NCBI
mRatBN7.2	X	14,484,774 - 14,488,797 (+)	NCBI
Rnor_6.0	X	15,228,284 - 15,240,458 (+)	NCBI
Rnor_5.0	X	16,006,589 - 16,021,387 (+)	NCBI

Sequence:

show sequence

CATTGTGATGACCGTAAAGAACATTGAAGACACCACCATGTTCTATTCCAAGATCCTGGGCATG
GAGGTCACTACTTTCAAGAAAGAGGACAGAAGTACACGGCAGTGGTGAATGAAGAGACGGCTGG
AGCAATGGCTCGGCATGGAAGAGCAGTTCTGCCACAGGACCTGGTTCAGTTTCAGGCACCTCCA
TGACATCTACAAGAGAGATGGCTTAGACTTTGAAAGCACTTACTGCTCAATTATGAAGATTGGA
TGGAGTTCAGACCCTAGTACTCAGGGGGACCGGAAAGCACTGTGTTTCGGAGACCAAAAATTTA
ACCTGCACGAGGTGGGAAAGGAATTTGATCCCAAAGCAGCCCACCCCATTCCAGGCTCCTTGGA
CGTTTGTTTGATCACAGAGACGCCCCTGGAGGAGGTGATGAAGCGCCTTAAGGCTTTTGATGTC
CCCATTGAAGAGGGCCCAGTCTCCAGAACAGGAGCAAAGGGGCCTATTCTGTCCATCTACTTCC
GAGATCCTGACAGAAATCTCATTGAGGTGTCTAACTATGTCACCGCATGATTGAGACTGGCCTC
CCTCCATTCTGTTCTACAAAATGTCATCTTACTCCTAATTTCTTACATATCCCCAGAGACTTCT
AAAAACTGAGAACTTGGACAAAGGGGACCTAAGACAGGTTTATGTGCAAACTTTTGTGTCTGGA
GATCCTCCATTCAAGCTACTCCAATACATGACAAATCTCTCTTGTCTCAGTTCAGTGTCTGGGG
ACTTGTCTAGGGCATGAGTTCTCTGAGACTTTTGGAGGTCTGGGCTAGAGTTTGGTGTCTCTAG
AGATTAAATTGGGGGCCATCCTTTTGAAATTCAAGGCCCTTGAAAGATT

hide sequence

RefSeq Acc Id:

XM_039099630 ⟹ XP_038955558

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	17,146,241 - 17,160,733 (+)	NCBI
mRatBN7.2	X	14,474,305 - 14,488,797 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100427	(Get FASTA)	NCBI Sequence Viewer
	XP_006256768	(Get FASTA)	NCBI Sequence Viewer
	XP_038955558	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL83807	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000008648
	ENSRNOP00000008648.4

RefSeq Acc Id:	NP_001100427 ⟸ NM_001106957
- UniProtKB:	D3Z9B0 (UniProtKB/TrEMBL), A6KP59 (UniProtKB/TrEMBL)
- Sequence:	show sequence MWGPTSESPLWRTSSQTPSPCLICRLDHIVMTVKNIEDTTMFYSKILGMEVTTFKGDRKALCFG DQKFNLHEVGKEFDPKAAHPIPGSLDVCLITETPLEEVMKRLKAFDVPIEEGPVSRTGAKGPIL SIYFRDPDRNLIEVSNYVTA hide sequence

RefSeq Acc Id:	XP_006256768 ⟸ XM_006256706
- Peptide Label:	isoform X2
- Sequence:	show sequence MKRRLEQWLGMEEQFCHRTWFSFRHLHDIYKRDGLDFESTYCSIMKIGWSSDPSTQGDRKALCF GDQKFNLHEVGKEFDPKAAHPIPGSLDVCLITETPLEEVMKRLKAFDVPIEEGPVSRTGAKGPI LSIYFRDPDRNLIEVSNYVTA hide sequence

RefSeq Acc Id:

ENSRNOP00000008648 ⟸ ENSRNOT00000008648

RefSeq Acc Id:	XP_038955558 ⟸ XM_039099630
- Peptide Label:	isoform X1

Protein Domains

VOC

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3Z9B0-F1-model_v2	AlphaFold	D3Z9B0	1-148	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701734

Promoter ID:

EPDNEW_R12258

Type:

initiation region

Name:

Glod5_1

Description:

glyoxalase domain containing 5

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	X	15,225,675 - 15,225,735	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1564596	AgrOrtholog
BioCyc Gene	G2FUF-2941	BioCyc
Ensembl Genes	ENSRNOG00000039571	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000008648	ENTREZGENE
	ENSRNOT00000008648.6	UniProtKB/TrEMBL
Gene3D-CATH	3.10.180.10	UniProtKB/TrEMBL
InterPro	Glyas_Bleomycin-R_OHBP_Dase	UniProtKB/TrEMBL
	Glyas_Fos-R_dOase_dom	UniProtKB/TrEMBL
	VOC	UniProtKB/TrEMBL
KEGG Report	rno:302554	UniProtKB/TrEMBL
NCBI Gene	302554	ENTREZGENE
PANTHER	GLYOXALASE DOMAIN-CONTAINING PROTEIN 5	UniProtKB/TrEMBL
	GLYOXALASE FAMILY PROTEIN	UniProtKB/TrEMBL
Pfam	Glyoxalase	UniProtKB/TrEMBL
PhenoGen	Glod5	PhenoGen
PROSITE	VOC	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000039571	RatGTEx
Superfamily-SCOP	SSF54593	UniProtKB/TrEMBL
UniProt	A6KP59	ENTREZGENE, UniProtKB/TrEMBL
	D3Z9B0	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-06	Glod5	glyoxalase domain containing 5	RGD1564596_predicted	similar to RIKEN cDNA 2010001H14 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1564596_predicted	similar to RIKEN cDNA 2010001H14 (predicted)	LOC302554	similar to RIKEN cDNA 2010001H14	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC302554	similar to RIKEN cDNA 2010001H14			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar