Galnt4 (polypeptide N-acetylgalactosaminyltransferase 4)

Gene: Galnt4 (polypeptide N-acetylgalactosaminyltransferase 4) Rattus norvegicus

Analyze

Symbol:

Galnt4

Name:

polypeptide N-acetylgalactosaminyltransferase 4

RGD ID:

1564589

Description:

Predicted to enable manganese ion binding activity and polypeptide N-acetylgalactosaminyltransferase activity. Predicted to be involved in protein O-linked glycosylation via serine and protein O-linked glycosylation via threonine. Predicted to be located in perinuclear region of cytoplasm. Predicted to colocalize with Golgi apparatus. Orthologous to human GALNT4 (polypeptide N-acetylgalactosaminyltransferase 4); PARTICIPATES IN O-linked glycan biosynthetic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

MGC125173; polypeptide GalNAc transferase-T4; UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4; UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4 (GalNAc-T4)

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	35,811,904 - 35,814,445 (+)	NCBI		GRCr8
mRatBN7.2	7	33,925,229 - 33,927,770 (+)	NCBI	mRatBN7.2	mRatBN7.2
UTH_Rnor_SHR_Utx	7	35,914,463 - 35,917,004 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	38,096,228 - 38,098,769 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	37,829,311 - 37,831,852 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	41,305,437 - 41,309,621 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	7	41,341,613 - 41,347,240 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	36,684,516 - 36,687,057 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	7	30,941,312 - 30,943,853 (+)	NCBI		Celera
Cytogenetic Map	7	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Childhood Schizophrenia (ISO)

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

4,4'-diaminodiphenylmethane (EXP,ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

aflatoxin B1 (ISO)

antirheumatic drug (ISO)

bisphenol A (EXP,ISO)

bortezomib (ISO)

butanal (ISO)

cobalt dichloride (EXP)

cyclosporin A (ISO)

dextran sulfate (ISO)

diethylstilbestrol (ISO)

epoxiconazole (ISO)

ethanol (ISO)

flutamide (EXP)

genistein (ISO)

maneb (ISO)

methotrexate (ISO)

paraquat (ISO)

pentanal (ISO)

perfluorooctane-1-sulfonic acid (ISO)

resveratrol (ISO)

silicon dioxide (ISO)

Soman (EXP)

titanium dioxide (ISO)

urethane (ISO)

valproic acid (ISO)

zearalenone (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

protein O-linked glycosylation via serine (ISO)

protein O-linked glycosylation via threonine (ISO)

Cellular Component

Golgi apparatus (ISO)

perinuclear region of cytoplasm (ISO)

Molecular Function

manganese ion binding (ISO)

polypeptide N-acetylgalactosaminyltransferase activity (ISO)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

O-linked glycan biosynthetic pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:9804815	PMID:12506059	PMID:19199708	PMID:29208955

Genomics

Comparative Map Data

Galnt4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	35,811,904 - 35,814,445 (+)	NCBI		GRCr8
mRatBN7.2	7	33,925,229 - 33,927,770 (+)	NCBI	mRatBN7.2	mRatBN7.2
UTH_Rnor_SHR_Utx	7	35,914,463 - 35,917,004 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	38,096,228 - 38,098,769 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	37,829,311 - 37,831,852 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	41,305,437 - 41,309,621 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	7	41,341,613 - 41,347,240 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	36,684,516 - 36,687,057 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	7	30,941,312 - 30,943,853 (+)	NCBI		Celera
Cytogenetic Map	7	q13	NCBI

GALNT4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	89,519,412 - 89,524,796 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	89,519,412 - 89,524,796 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	89,913,189 - 89,918,573 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	88,437,320 - 88,442,666 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	88,415,659 - 88,421,003	NCBI
Celera	12	89,584,860 - 89,590,206 (-)	NCBI		Celera
Cytogenetic Map	12	q21.33	NCBI
HuRef	12	86,979,065 - 86,984,460 (-)	NCBI		HuRef
CHM1_1	12	89,878,213 - 89,883,608 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	89,501,268 - 89,506,652 (-)	NCBI		T2T-CHM13v2.0

Galnt4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	98,943,997 - 98,949,109 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	98,944,021 - 98,949,109 (+)	Ensembl		GRCm39 Ensembl
GRCm38	10	99,108,135 - 99,113,247 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	99,108,159 - 99,113,247 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	98,570,769 - 98,575,881 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	98,537,826 - 98,542,935 (+)	NCBI		MGSCv36	mm8
Celera	10	101,080,064 - 101,085,176 (+)	NCBI		Celera
Cytogenetic Map	10	C3	NCBI
cM Map	10	51.06	NCBI

Galnt4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004956666	1,955 - 3,520 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004956666	67 - 3,521 (-)	NCBI	ChiLan1.0	ChiLan1.0

GALNT4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	93,132,675 - 93,135,709 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	93,133,008 - 93,138,941 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

Galnt4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624750	17,203,991 - 17,208,304 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Galnt4
4 total Variants

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
724560	Plsm3	Polydactyly-luxate syndrome (PLS) morphotypes QTL 3		0.0003	tibia length (VT:0004357)	tibia length (CMO:0000450)	7	1	34000259	Rat
2317047	Wbc4	White blood cell count QTL 4		0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	7	1	35342956	Rat
61410	Bw19	Body weight QTL 19	6.2	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	44782185	Rat
631503	Bp102	Blood pressure QTL 102	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	1	44822433	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	924703	115097879	Rat
10755438	Coatc9	Coat color QTL 9		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	3529280	48529280	Rat
9590102	Sffal5	Serum free fatty acids level QTL 5	8.62	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	7	5329019	50329019	Rat
10755440	Coatc10	Coat color QTL 10		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	7496499	52496499	Rat
10059592	Kidm45	Kidney mass QTL 45	3.95	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	7	7573985	52573985	Rat
2298547	Neuinf5	Neuroinflammation QTL 5	3.7		nervous system integrity trait (VT:0010566)	spinal cord Cd74 protein level (CMO:0002131)	7	9462246	58265113	Rat
1643004	Pain2	Pain QTL 2	1		mechanical nociception trait (VT:0002734)	self mutilation severity score (CMO:0002145)	7	9462246	98011544	Rat
1578652	Bmd15	Bone mineral density QTL 15	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	7	9866467	60460686	Rat
738033	Anxrr6	Anxiety related response QTL 6	4.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	7	15573889	60573889	Rat
1582260	Bw72	Body weight QTL 72	3.2	0.0043	body mass (VT:0001259)	body weight (CMO:0000012)	7	15795565	38073970	Rat
1582261	Bw69	Body weight QTL 69	3.2	0.0048	body mass (VT:0001259)	body weight (CMO:0000012)	7	15795565	38073970	Rat
1582262	Bw75	Body weight QTL 75	3	0.0038	body mass (VT:0001259)	body weight (CMO:0000012)	7	15795565	38073970	Rat
2317059	Aia15	Adjuvant induced arthritis QTL 15	2.46		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	7	17004598	62004598	Rat
10755451	Coatc11	Coat color QTL 11		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	17944357	62944357	Rat
61369	Mcs2	Mammary carcinoma susceptibility QTL 2	3.38		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	7	19032807	35526300	Rat
1354637	Scl30	Serum cholesterol level QTL 30	3.7		blood cholesterol amount (VT:0000180)	blood total cholesterol level (CMO:0000051)	7	19654317	49753746	Rat
1354644	Spl4	Serum phospholipid level QTL 4	4.9		blood phospholipid amount (VT:0006084)	blood phospholipid level (CMO:0001169)	7	19654317	49753746	Rat
1354639	Spl5	Serum phospholipid level QTL 5	3.9		blood LDL phospholipid amount (VT:0010505)	blood low density lipoprotein phospholipid level (CMO:0001568)	7	19654317	52888450	Rat
1300132	Bp182	Blood pressure QTL 182	3.49		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	19654317	84928080	Rat
7411569	Bw137	Body weight QTL 137		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	21921195	66921195	Rat
1641885	Alcrsp9	Alcohol response QTL 9			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	7	24099606	69099606	Rat
1549840	Bss5	Bone structure and strength QTL 5	9.8		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	7	24751841	69751841	Rat
70190	Mcs6	Mammary carcinoma susceptibility QTL 6	2.29		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	7	26737401	63902784	Rat
1300138	Hrtrt9	Heart rate QTL 9	4.72		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	7	29409683	53612950	Rat
10402855	Bp379	Blood pressure QTL 379		0.21	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	29409683	74409683	Rat
1300127	Srn1	Serum renin concentration QTL 1	3.87		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	7	29409683	84928080	Rat
10755453	Coatc12	Coat color QTL 12		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	31112832	76112832	Rat

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001025053	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006241297	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595048	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB040675	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC105818	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473960	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

NM_001025053 ⟹ NP_001020224

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	35,811,904 - 35,814,445 (+)	NCBI
mRatBN7.2	7	33,925,229 - 33,927,770 (+)	NCBI
Rnor_6.0	7	41,305,807 - 41,308,348 (+)	NCBI
Rnor_5.0	7	41,341,613 - 41,347,240 (+)	NCBI
RGSC_v3.4	7	36,684,516 - 36,687,057 (+)	RGD
Celera	7	30,941,312 - 30,943,853 (+)	RGD

Sequence:

show sequence

AAGTTCTGAGAAGAGCAGGAGGAAGTGGGCACCAGTTGTGCTGCACCAGAGGCCGGGGAGCGAG
GGGTCTCAAGTGACCCCTGGGAAACTCCGGTGTCAGGAAGGAGCCGAGCGCCTACATGAAAGGA
GGGACCTTCTCGGAAGTTCGCCCCTACCTGAGCCGGGAACTCCAGCTTCAGGATCCGCTGCACT
CCCCCCGCGTGCTGGCTCGGTGGCCGCGTCTACACACGACCTCTGAGGTTCCGGATGGCCGTGA
GGTGGACATGGGCAGGCAAAAGCTGCCTGCTGCTGGCGCTTTTAACACTGGCTTATATTCTGGT
GGAGTTCTCGGTCTCTACTTTGTATGCCTCCTCGGGAGCTGACCGTGCCAGGGAGCTGGGGCCA
AGGAGACTCTCAGATCATGAGACAAGGGAAGAGGATTTGTCTCAGCCTCTTTATAAAAAGCCCC
CTGCAGATTCCCATGCTCTTGGGGAATGGGGGAGAGCAAGCAAACTCCAGCTCGATGAGGGTGA
ACTGAAGCAGCAAGAAGAACTCATTGAGAGATACGCCATCAACATTTACCTCAGTGACAGGATC
TCCCTGCACCGCCACATAGAGGATAAAAGAATGTATGAGTGTAAAGCCAAGAAGTTCCACTACA
GGTCGCTCCCCACCACCTCCGTTATCATCGCCTTTTATAATGAAGCCTGGTCCACTCTGCTTCG
AACCATTCACAGTGTTCTAGAAACTTCTCCAGCTGTGCTTTTAAAGGAGATCATCTTGGTGGAT
GACTTAAGTGACAGAATTTATCTGAAGGCTCAACTTGAAGCTTATATCAGCAACCTCGATAGAG
TTCGCTTGATTAGAACCAATAAGAGAGAGGGGCTGGTCCGGGCCCGTCTGATTGGGGCCACTTT
TGCCACCGGGGATGTCCTCACTTTCCTGGATTGTCACTGTGAGTGTAACACTGGTTGGTTGGAA
CCGCTTTTGGAAAGGATCAGTAGAGATGAAACAGCAATTGTATGTCCTGTCATCGACACCATCG
ACTGGAATACTTTCGAATTCTATATGCAGACCGGGGAGCCCATGATTGGTGGTTTTGACTGGCG
TTTGACCTTCCAGTGGCATTCTGTCCCCAAACATGAAAGGGACAGGCGGACATCAAGAATTGAC
CCCATCAGGTCACCCACCATGGCAGGAGGCCTGTTTGCTGTCAGCAAGAAGTATTTTCAGTACC
TGGGAACGTATGACACTGGCATGGAAGTCTGGGGAGGTGAAAACCTTGAGCTGTCTTTCAGGGT
TTGGCAGTGCGGCGGCAAGCTGGAGATCCACCCATGTTCTCACGTGGGCCACGTGTTTCCCAAG
CGGGCGCCCTACGCTCGCCCCAACTTCCTACAGAACACCGCTAGGGCGGCGGAAGTGTGGATGG
ATGACTACAAAGAGCATTTCTATAACCGGAACCCTCCCGCTCGAAAAGAGACCTATGGCGATAT
TTCGGAAAGGAAGTTACTGAGGGAACGGCTGCAATGTAAGAGCTTCGACTGGTATTTGAAAAAT
GTGTTCTCTAACTTACACGTTCCGGAGGATAGACCTGGCTGGCACGGAGCCATCCGCAGTATGG
GCATCTCTTCAGAGTGCTTAGATTATAATGCACCGGACAACAACCCTACGGGTGCTAACCTTTC
GCTGTTTGGATGCCACGGTCAAGGGGGCAATCAGTTCTTTGAATATACTTCAAACAAGGAAATC
AGATTTAATTCCGTGACGGAATTATGTGCAGAGGTCCCCCAACAAAAGGATTATGTAGGGATGC
AAAACTGCCCCAAAGATGGGCTCCCCATTCCAGTTAACATCATTTGGCATTTTAAAGAAGACGG
GACGATTTTTCACCCTCACACAAGACTGTGTCTTAGTGCTTACCGGACAGCCGACGGCCGACCT
AGCGTACAGATGAAAACTTGTGATGCCCTTGATAAAAACCAGATCTGGAGGTTCGAGAAATAGA
CAAGCAGAACAGCTTTCTGGGGCTGACTGTAGCCTCTGGAAAGTAACCCTGCCCAGTGATGATT
GTACTTTTACCAGAAGTCACCTGGCAGCTGTCTGTAAGAACACTGGAAAGCCATGGTTCATCTG
GGGATATCTCTCTGAAGCTGGGTACACAGAGCACTGCTGCTCAATATCTCAAAGTGCCTTCTTT
GCTCTCGGGTTTTATTTAAAAGCTTTGTCGATATGGTCTTCTGCAACTCCTTAAGGAAAGCCGC
TGTGAACTGAGATGCACAGAACACTTAAGTGTGGGCTAAGGGTGGAGCTTAGCAGTAGAATGCT
TAGCTAACACGTGTAAGACCCTGAGTCCCACCCACTGCACCACAAAATACGTGCAAGGCTTAAT
ATTTAGAACATAAGAGTCCAGGCAACATGGGGTGAGATTCGTTCTGATTGGTAAATTCATTGCA
TGAACTTTTCTTTTTTTTTTTTAATCAAAACATGTGAATGTGTAATTAGAGCTATTACTTTTTG
ATTATACCCTTTTAGTAAGCATATTAAATTTTAGGTTTCTAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001020224	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI05819	(Get FASTA)	NCBI Sequence Viewer
	BAD93348	(Get FASTA)	NCBI Sequence Viewer
	EDM16819	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001020224 ⟸ NM_001025053

- UniProtKB:

Q3KR95 (UniProtKB/TrEMBL), Q58A68 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAVRWTWAGKSCLLLALLTLAYILVEFSVSTLYASSGADRARELGPRRLSDHETREEDLSQPLY
KKPPADSHALGEWGRASKLQLDEGELKQQEELIERYAINIYLSDRISLHRHIEDKRMYECKAKK
FHYRSLPTTSVIIAFYNEAWSTLLRTIHSVLETSPAVLLKEIILVDDLSDRIYLKAQLEAYISN
LDRVRLIRTNKREGLVRARLIGATFATGDVLTFLDCHCECNTGWLEPLLERISRDETAIVCPVI
DTIDWNTFEFYMQTGEPMIGGFDWRLTFQWHSVPKHERDRRTSRIDPIRSPTMAGGLFAVSKKY
FQYLGTYDTGMEVWGGENLELSFRVWQCGGKLEIHPCSHVGHVFPKRAPYARPNFLQNTARAAE
VWMDDYKEHFYNRNPPARKETYGDISERKLLRERLQCKSFDWYLKNVFSNLHVPEDRPGWHGAI
RSMGISSECLDYNAPDNNPTGANLSLFGCHGQGGNQFFEYTSNKEIRFNSVTELCAEVPQQKDY
VGMQNCPKDGLPIPVNIIWHFKEDGTIFHPHTRLCLSAYRTADGRPSVQMKTCDALDKNQIWRF
EK

hide sequence

Protein Domains

Ricin B lectin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1564589	AgrOrtholog
BioCyc Gene	G2FUF-34272	BioCyc
BioCyc Pathway	PWY-7433 [mucin core 1 and core 2 O-glycosylation]	BioCyc
	PWY-7435 [mucin core 3 and core 4 O-glycosylation]	BioCyc
BioCyc Pathway Image	PWY-7433	BioCyc
	PWY-7435	BioCyc
Gene3D-CATH	2.80.10.50	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7368805	IMAGE-MGC_LOAD
InterPro	GalNAc-T	UniProtKB/TrEMBL
	Glyco_trans_2	UniProtKB/TrEMBL
	Nucleotide-diphossugar_trans	UniProtKB/TrEMBL
	Ricin_B-like_lectins	UniProtKB/TrEMBL
	Ricin_B_lectin	UniProtKB/TrEMBL
KEGG Report	rno:500826	UniProtKB/TrEMBL
MGC_CLONE	MGC:125173	IMAGE-MGC_LOAD
NCBI Gene	500826	ENTREZGENE
PANTHER	N-ACETYLGALACTOSAMINYLTRANSFERASE	UniProtKB/TrEMBL
	POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 4	UniProtKB/TrEMBL
Pfam	Glycos_transf_2	UniProtKB/TrEMBL
	Ricin_B_lectin	UniProtKB/TrEMBL
PhenoGen	Galnt4	PhenoGen
PROSITE	RICIN_B_LECTIN	UniProtKB/TrEMBL
SMART	RICIN	UniProtKB/TrEMBL
Superfamily-SCOP	RicinB_like	UniProtKB/TrEMBL
	SSF53448	UniProtKB/TrEMBL
UniProt	Q3KR95	ENTREZGENE, UniProtKB/TrEMBL
	Q58A68	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2014-04-30	Galnt4	polypeptide N-acetylgalactosaminyltransferase 4	Galnt4	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4 (GalNAc-T4)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-10-17	Galnt4	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4 (GalNAc-T4)	Galnt4	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-04	Galnt4	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4	Galnt4	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4 (GalNAc-T4)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	Galnt4	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4 (GalNAc-T4)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)

BioCyc Pathways