Imported Disease Annotations - OMIMTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | MULTIPLE CONGENITAL ANOMALIES-NEURODEVELOPMENTAL SYNDROME, X-LINKED | | ISO | OTUD5 (Homo sapiens) | 7240710 | | OMIM | | |
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Imported Disease Annotations - OMIMTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | MULTIPLE CONGENITAL ANOMALIES-NEURODEVELOPMENTAL SYNDROME, X-LINKED | | ISO | OTUD5 (Homo sapiens) | 7240710 | | OMIM | | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | KEGG Annotation Import Pipeline | Pipeline to import KEGG annotations from KEGG into RGD |
3. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
4. | Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. | Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11. |
PMID:15057822 | PMID:15489334 | PMID:17991829 | PMID:22245969 | PMID:23827681 | PMID:25470037 |
Otud5 (Rattus norvegicus - Norway rat) |
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OTUD5 (Homo sapiens - human) |
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Otud5 (Mus musculus - house mouse) |
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Otud5 (Chinchilla lanigera - long-tailed chinchilla) |
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OTUD5 (Pan paniscus - bonobo/pygmy chimpanzee) |
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OTUD5 (Canis lupus familiaris - dog) |
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Otud5 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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OTUD5 (Sus scrofa - pig) |
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OTUD5 (Chlorocebus sabaeus - green monkey) |
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Otud5 (Heterocephalus glaber - naked mole-rat) |
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Variants in Otud5
89 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
Slc25a39 |
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alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 3 | 43 | 57 | 41 | 19 | 41 | 6 | 9 | 74 | 35 | 41 | 11 | 6 |
Low | 2 | 2 | 2 | ||||||||||
Below cutoff |
RefSeq Transcripts | NM_001037496 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
NM_001414730 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006256737 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006256740 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006256741 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063280118 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063280119 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063280120 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063280121 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063280122 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063280123 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | BC110054 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
JAXUCZ010000021 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000006233 ⟹ ENSRNOP00000006233 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000112857 ⟹ ENSRNOP00000090218 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000113203 ⟹ ENSRNOP00000080452 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001037496 ⟹ NP_001032585 | ||||||||||||||||||||||||||||
RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001414730 ⟹ NP_001401659 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_006256737 ⟹ XP_006256799 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006256740 ⟹ XP_006256802 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006256741 ⟹ XP_006256803 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_063280118 ⟹ XP_063136188 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063280119 ⟹ XP_063136189 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063280120 ⟹ XP_063136190 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063280121 ⟹ XP_063136191 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063280122 ⟹ XP_063136192 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063280123 ⟹ XP_063136193 | ||||||||
Type: | CODING | ||||||||
Position: |
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Protein RefSeqs | NP_001032585 | (Get FASTA) | NCBI Sequence Viewer |
NP_001401659 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006256799 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006256802 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006256803 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063136188 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063136189 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063136190 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063136191 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063136192 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063136193 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAI10055 | (Get FASTA) | NCBI Sequence Viewer |
Ensembl Protein | ENSRNOP00000006233 | ||
ENSRNOP00000006233.6 | |||
ENSRNOP00000080452 | |||
ENSRNOP00000080452.1 | |||
ENSRNOP00000090218 | |||
ENSRNOP00000090218.1 | |||
GenBank Protein | Q2YDU3 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_001032585 ⟸ NM_001037496 |
- Peptide Label: | isoform 2 |
- UniProtKB: | A6KP74 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006256799 ⟸ XM_006256737 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A0A8I6AAB2 (UniProtKB/TrEMBL), A6KP75 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006256802 ⟸ XM_006256740 |
- Peptide Label: | isoform X5 |
- UniProtKB: | A6KP74 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006256803 ⟸ XM_006256741 |
- Peptide Label: | isoform X6 |
- UniProtKB: | A0A0H2UHD0 (UniProtKB/TrEMBL), A6KP74 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000006233 ⟸ ENSRNOT00000006233 |
RefSeq Acc Id: | ENSRNOP00000080452 ⟸ ENSRNOT00000113203 |
RefSeq Acc Id: | ENSRNOP00000090218 ⟸ ENSRNOT00000112857 |
RefSeq Acc Id: | NP_001401659 ⟸ NM_001414730 |
- Peptide Label: | isoform 1 |
- UniProtKB: | Q2YDU3 (UniProtKB/Swiss-Prot) |
RefSeq Acc Id: | XP_063136190 ⟸ XM_063280120 |
- Peptide Label: | isoform X4 |
RefSeq Acc Id: | XP_063136191 ⟸ XM_063280121 |
- Peptide Label: | isoform X7 |
RefSeq Acc Id: | XP_063136189 ⟸ XM_063280119 |
- Peptide Label: | isoform X3 |
RefSeq Acc Id: | XP_063136188 ⟸ XM_063280118 |
- Peptide Label: | isoform X2 |
RefSeq Acc Id: | XP_063136192 ⟸ XM_063280122 |
- Peptide Label: | isoform X8 |
RefSeq Acc Id: | XP_063136193 ⟸ XM_063280123 |
- Peptide Label: | isoform X9 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q2YDU3-F1-model_v2 | AlphaFold | Q2YDU3 | 1-566 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
Database | Acc Id | Source(s) |
AGR Gene | RGD:1563027 | AgrOrtholog |
BioCyc Gene | G2FUF-2925 | BioCyc |
Ensembl Genes | ENSRNOG00000008764 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000006233.8 | UniProtKB/TrEMBL |
ENSRNOT00000112857.1 | UniProtKB/TrEMBL | |
ENSRNOT00000113203 | ENTREZGENE | |
ENSRNOT00000113203.1 | UniProtKB/TrEMBL | |
Gene3D-CATH | 3.90.70.80 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
IMAGE_CLONE | IMAGE:7446041 | IMAGE-MGC_LOAD |
InterPro | OTU_dom | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Papain-like_cys_pep_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | rno:363452 | UniProtKB/Swiss-Prot |
MGC_CLONE | MGC:125088 | IMAGE-MGC_LOAD |
NCBI Gene | 363452 | ENTREZGENE |
PANTHER | OTU DOMAIN CONTAINING PROTEIN | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PTHR12419:SF4 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | OTU | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PhenoGen | Otud5 | PhenoGen |
PROSITE | OTU | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
RatGTEx | ENSRNOG00000008764 | RatGTEx |
Superfamily-SCOP | SSF54001 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
UniProt | A0A0H2UHD0 | ENTREZGENE, UniProtKB/TrEMBL |
A0A8I5ZQ70_RAT | UniProtKB/TrEMBL | |
A0A8I6AAB2 | ENTREZGENE, UniProtKB/TrEMBL | |
A6KP74 | ENTREZGENE, UniProtKB/TrEMBL | |
A6KP75 | ENTREZGENE, UniProtKB/TrEMBL | |
OTUD5_RAT | UniProtKB/Swiss-Prot, ENTREZGENE |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2014-03-13 | Otud5 | OTU deubiquitinase 5 | Otud5 | OTU domain containing 5 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2006-03-30 | Otud5 | OTU domain containing 5 | Symbol and Name status set to approved | 1299863 | APPROVED | ||
2006-02-09 | Otud5 | OTU domain containing 5 | Symbol and Name status set to provisional | 70820 | PROVISIONAL |