Cers5 (ceramide synthase 5) - Rat Genome Database

Name: Cers5
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Cers5 (ceramide synthase 5) Rattus norvegicus

Analyze

Symbol:

Cers5

Name:

ceramide synthase 5

RGD ID:

1311597

Description:

Predicted to enable sphingosine N-acyltransferase activity. Involved in oligodendrocyte development. Predicted to be located in endoplasmic reticulum. Orthologous to human CERS5 (ceramide synthase 5); INTERACTS WITH 1,3-dinitrobenzene; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LAG1 homolog, ceramide synthase 5; LAG1 longevity assurance homolog 5; Lass5; LOC366984; longevity assurance homolog 5; longevity assurance homolog 5 (S. cerevisiae)

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CERS5 (ceramide synthase 5)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, Panther
Mus musculus (house mouse):	Cers5 (ceramide synthase 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cers5 (ceramide synthase 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CERS5 (ceramide synthase 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CERS5 (ceramide synthase 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cers5 (ceramide synthase 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CERS5 (ceramide synthase 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CERS5 (ceramide synthase 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cers5 (ceramide synthase 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	CERS6 (ceramide synthase 6)	HGNC	OrthoDB
Homo sapiens (human):	CCDC88B (coiled-coil domain containing 88B)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	CERS5 (ceramide synthase 5)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cers5 (ceramide synthase 5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cers5 (ceramide synthase 5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	LAC1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	LAG1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	hyl-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	hyl-2	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	schlank	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cers5	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	7	130,859,993 - 130,897,979 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	130,859,990 - 130,897,947 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	132,663,711 - 132,701,684 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	7	134,889,292 - 134,927,271 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	7	134,801,817 - 134,839,796 (-)	NCBI	Rnor_WKY
Rnor_6.0	7	141,386,391 - 141,424,375 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	141,386,391 - 141,424,343 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	115,891,039 - 115,929,166 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	138,475,151 - 138,513,647 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	138,552,127 - 138,590,121 (-)	NCBI
Celera	7	127,341,386 - 127,379,336 (-)	NCBI		Celera
Cytogenetic Map	7	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

1,3-dinitrobenzene (EXP)

17alpha-ethynylestradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (EXP)

4-amino-2,6-dinitrotoluene (EXP)

4-hydroxyphenyl retinamide (ISO)

acetamide (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

cadmium dichloride (ISO)

chloroacetaldehyde (ISO)

choline (ISO)

cidofovir anhydrous (ISO)

cisplatin (ISO)

clodronic acid (ISO)

cyclosporin A (ISO)

dioxygen (ISO)

ethyl methanesulfonate (ISO)

fenofibrate (EXP)

folic acid (ISO)

formaldehyde (ISO)

hydralazine (ISO)

ibuprofen (EXP)

ifosfamide (ISO)

indole-3-methanol (EXP)

L-methionine (ISO)

metformin (EXP)

methapyrilene (ISO)

methotrexate (ISO)

methyl methanesulfonate (ISO)

paracetamol (ISO)

pirinixic acid (ISO)

quercetin (ISO)

quercitrin (ISO)

resveratrol (ISO)

temozolomide (ISO)

tetracycline (ISO)

thioacetamide (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

ceramide biosynthetic process (IBA,ISO)

oligodendrocyte development (IEP)

sphingolipid biosynthetic process (ISO)

Cellular Component

endoplasmic reticulum (ISO)

endoplasmic reticulum membrane (IEA)

nucleus (IEA)

Molecular Function

DNA binding (IEA)

sphingosine N-acyltransferase activity (IBA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	Developmentally regulated ceramide synthase 6 increases mitochondrial Ca2+ loading capacity and promotes apoptosis.	Novgorodov SA, etal., J Biol Chem. 2011 Feb 11;286(6):4644-58. doi: 10.1074/jbc.M110.164392. Epub 2010 Dec 10.
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:12912983	PMID:15823095	PMID:16100120	PMID:16951403	PMID:17609214	PMID:17977534	PMID:29632068

Genomics

Comparative Map Data

Cers5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	7	130,859,993 - 130,897,979 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	130,859,990 - 130,897,947 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	132,663,711 - 132,701,684 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	7	134,889,292 - 134,927,271 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	7	134,801,817 - 134,839,796 (-)	NCBI	Rnor_WKY
Rnor_6.0	7	141,386,391 - 141,424,375 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	141,386,391 - 141,424,343 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	115,891,039 - 115,929,166 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	138,475,151 - 138,513,647 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	138,552,127 - 138,590,121 (-)	NCBI
Celera	7	127,341,386 - 127,379,336 (-)	NCBI		Celera
Cytogenetic Map	7	q36	NCBI

CERS5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	50,129,289 - 50,167,369 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	12	50,129,289 - 50,167,533 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	50,523,072 - 50,561,152 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	48,809,848 - 48,847,364 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	48,809,848 - 48,847,366	NCBI
Celera	12	49,319,058 - 49,356,938 (-)	NCBI		Celera
Cytogenetic Map	12	q13.12	NCBI
HuRef	12	47,556,867 - 47,594,235 (-)	NCBI		HuRef
CHM1_1	12	50,489,721 - 50,527,104 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	50,092,380 - 50,130,460 (-)	NCBI		T2T-CHM13v2.0

Cers5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	99,633,473 - 99,670,396 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	99,632,762 - 99,670,766 (-)	Ensembl		GRCm39 Ensembl
GRCm38	15	99,735,592 - 99,772,515 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	99,734,881 - 99,772,885 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	99,566,023 - 99,602,946 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	99,563,626 - 99,600,549 (-)	NCBI		MGSCv36	mm8
Celera	15	101,890,992 - 101,927,868 (-)	NCBI		Celera
Cytogenetic Map	15	F1	NCBI

Cers5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955547	697,089 - 726,139 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955547	697,089 - 728,573 (-)	NCBI	ChiLan1.0	ChiLan1.0

CERS5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	12	44,017,015 - 44,056,354 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	38,588,014 - 38,626,069 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	39,484,975 - 39,522,898 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	39,484,975 - 39,522,898 (+)	Ensembl	panpan1.1		panPan2

CERS5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	4,565,940 - 4,597,036 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	4,565,420 - 4,602,391 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	41,661,356 - 41,692,200 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	4,615,284 - 4,646,142 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	4,615,197 - 4,646,750 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	4,580,022 - 4,610,847 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	4,569,686 - 4,600,525 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	42,056,202 - 42,087,095 (-)	NCBI		UU_Cfam_GSD_1.0

Cers5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	65,355,578 - 65,384,629 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936512	7,780,153 - 7,809,188 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936512	7,780,212 - 7,809,182 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CERS5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	16,037,747 - 16,070,007 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	16,038,918 - 16,070,103 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

CERS5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	46,360,078 - 46,400,746 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	46,359,966 - 46,400,554 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	199,722,329 - 199,759,591 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cers5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624816	2,150,535 - 2,182,141 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624816	2,150,409 - 2,190,099 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Cers5
87 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	575
Count of miRNA genes:	278
Interacting mature miRNAs:	355
Transcripts:	ENSRNOT00000042981
Prediction methods:	Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300179	Kidm5	Kidney mass QTL 5	3.51		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	43747012	135012528	Rat
70173	Niddm19	Non-insulin dependent diabetes mellitus QTL 19	4.33	0.00005	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	64002457	135012528	Rat
1358891	Bp265	Blood pressure QTL 265	2.21		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	83591953	134666232	Rat
1358914	Bp266	Blood pressure QTL 266			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	83591953	134666232	Rat
1558655	Swd4	Spike wave discharge measurement QTL 4	3.68	0.0002	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge severity grade (CMO:0001988)	7	86983365	131983365	Rat
1549899	Stresp8	Stress response QTL 8	4.37	0.0008	stress-related behavior trait (VT:0010451)	defensive burying duration (CMO:0001961)	7	90482196	135012528	Rat
2299163	Iddm34	Insulin dependent diabetes mellitus QTL 34	2.71		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	7	91281130	135012528	Rat
731176	Glom5	Glomerulus QTL 5	2.5	0.0035	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	7	96670164	135012528	Rat
1331731	Bp216	Blood pressure QTL 216	2.851		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	102297359	133492884	Rat
731174	Uae23	Urinary albumin excretion QTL 23	2.4	0.0042	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	7	104603555	135012528	Rat
2306821	Bp335	Blood pressure QTL 335		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	106571501	135012528	Rat
631663	Bw6	Body weight QTL 6	3.4		body mass (VT:0001259)	body weight (CMO:0000012)	7	111075573	134976056	Rat
1300112	Bp183	Blood pressure QTL 183	3.51		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	111182207	135012528	Rat
1331748	Bp215	Blood pressure QTL 215	4.043		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	112308254	133492884	Rat
1357339	Stl14	Serum triglyceride level QTL 14	3.45	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	7	112729683	133492707	Rat
1354582	Stl11	Serum triglyceride level QTL 11	3.42		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	7	119513385	135012528	Rat

Markers in Region

BE113922

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	130,859,598 - 130,859,763 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	141,385,997 - 141,386,161	NCBI	Rnor6.0
Rnor_5.0	X	115,890,645 - 115,890,809	UniSTS	Rnor5.0
RGSC_v3.4	7	138,474,757 - 138,474,921	UniSTS	RGSC3.4
Celera	7	127,340,992 - 127,341,156	UniSTS
RH 3.4 Map	7	1075.7	UniSTS
Cytogenetic Map	7	q36	UniSTS

BG380488

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	130,860,023 - 130,860,160 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	141,386,422 - 141,386,558	NCBI	Rnor6.0
Rnor_5.0	X	115,891,070 - 115,891,206	UniSTS	Rnor5.0
RGSC_v3.4	7	138,475,182 - 138,475,318	UniSTS	RGSC3.4
Celera	7	127,341,417 - 127,341,553	UniSTS
RH 3.4 Map	7	1076.2	UniSTS
Cytogenetic Map	7	q36	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	36	22	6	19	6	1	1	74	31	40	11	1
Low		7	35	35		35	7	10		4	1		7
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108993	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006257374	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006257375	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079707	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079708	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC117865	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC166794	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474035	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000187	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000080109 ⟹ ENSRNOP00000070455

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	130,860,545 - 130,897,847 (-)	Ensembl
Rnor_6.0 Ensembl	7	141,386,934 - 141,424,225 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000084292 ⟹ ENSRNOP00000074498

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	130,859,993 - 130,897,947 (-)	Ensembl
Rnor_6.0 Ensembl	7	141,386,391 - 141,424,343 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000097394 ⟹ ENSRNOP00000097956

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	130,859,990 - 130,897,869 (-)	Ensembl

RefSeq Acc Id:

NM_001108993 ⟹ NP_001102463

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	130,859,993 - 130,897,947 (-)	NCBI
Rnor_6.0	7	141,386,391 - 141,424,343 (-)	NCBI
Rnor_5.0	X	115,891,039 - 115,929,166 (-)	NCBI
RGSC_v3.4	7	138,475,151 - 138,513,647 (-)	RGD
Celera	7	127,341,386 - 127,379,336 (-)	RGD

Sequence:

show sequence

GGGCGTCTGGGAGGACCCGAGGACGGAAGAGGGTGGCCGTAGGCCGGGCCCCGCCCCGGGGCCG
CCTTCCAGCGGGTTCTTTTTGCCTTGGCTGCCTCGGAGGCTGTGGCGGCAGTGGCCGCCGGGCG
CGCGTAAGATGGCGACTGCGGCGGCGGAAGCCCTGGGCCTCCTGTGGGGCTGGCTGTGGAGCGG
GCGCTTCTGGCTGCCTCAGAACGTGAGCTGGGCGGACCTGGAGGGCCCGGGCGACGGCTACGGC
TACCCGCGCGCCCGGCACGTGCTGTCGGTGTTCCCGCTGGCAGCAGGTCTCTTCTCCGTGAGGA
TGCTGTTCGAGCGATTTATTGCTAAACCCTGTGCACTCCGTATTGGCATTGAAGACAGTGCTGT
CTACCAGGTGGAATCCAATGTCACCCTTGAGAAGGTGTTCACATCTATCTCTAAGTATCCTGAT
GAGAAAAGGCTGAAGGGCCTATCAAAGCAACTGGACTGGGATGTTCGAAAAATCCAATGCTGGT
TTCGCCATCGGAGAAATCAGGACAAGCCTCCAACGCTCACTAAGTTCTGTGAGAGCATGTGGAG
ATTCACTTTCTATTTTTGTATCTTCTGCTACGGAGTCAGATTTCTCTGGTCGATGCCTTGGCTC
TGGGATACCCGACAGTGCTGGTACAACTATCCATATCAGCCACTCTCAAGAGAGCTCTATTACT
ACTATCTCACACAGCTGGCCTTCTACTGGTCCCTCGTGTTCTCTCAGTTTATAGATGTTAAAAG
AAAGGACTTCCTGATGATGTTTATGCATCATTTGATCGCCGTCACGCTCATCAGTTTCTCCTAC
ATCAACAACATGGTGCGAGTGGGAGCCATCATCTTGTGTCTGCATGACTCCGCCGACTCCTTGC
TAGAAGCTGCCAAGCTGGCCAATTACGCCAGACAGGAGCGGCTCTGTAACACCCTCTTTGTGAT
CTTTGGTGCAGCTTTTATGGTTACTCGTCTAGGGATCTTCCCTTTGTGGATTCTGAACACAACC
CTCTTTGAGAGCTGGGAGATTATTGGGCCCTTTCCTTCCTGGTGGCTCTTCAATGGCCTCCTCC
TGATCCTACAGATGTTGCATGTCATCTGGTCCTACCTAATCGCACGAACTGCTTTTAAAGCCTT
GGTCCGGGGCAAGGTGACCTACCCAGGAGGGATTAGCCCCGGCTCTGTACCCTCTGCTCTTTTC
TCACCTCCTTCCTCTTTTCTATGCCTGGTGGCAGCTGGACAGTCCCATCCTCTGCATGTGTCTA
AGGATGACCGCAGTGATGTAGAAAGCAGCTCAGAGGAAGATGAGACCACACACACGAACAACCT
CTCTGGCAGCAGTTCCAGCAACGGTGCCAACTGCATGAACGGCCGCATGGGAGGCAGCCACTTG
GCTGAGGAGCAGGGGACTTGTAAAGCTGCTGGCAACCTACACTTTGGGGCCTCCCCACGTATAC
ACTCCTGTGACTAGAGGGACCGCCAGGCACTGAGGAGAATCTGAGAAACAAATGTTTTTGTGTT
TTAAAGAAACTCTGCCATTTTGTATTTAATGCCCTGGTCCTTCAGTGACATCACTGGCTCTTTG
TCTGTGTGTCTGTGCGTCTGTACATGTGCATCATGCATGTGGATGAGCGTCATCCACTAGGTTG
GGCACAAGGCTGGATTACTAGTCAGTGTCTGGTCACTTCTGAATCACCTCCGGTCCAGCGTTCG
CTGTATCTTGAGTTAAGCTGTCTCCCAACCAGCTGTGTCCTCTTTCCGTGGCTCTTGAGACTCT
TCAGTTCCTGGTCCATGGAAGTCAGTGGTGCGGCCACTTGGCTCCAGCACTTGGAGACTGTTCT
TTTGGAGGAGGAAGTAATTTTCACCTGATGGAACACTCTGGATAGACACCAGGATCACTGTAGC
CACATGCCCCCTTCCTGCCACCCGACAGTGTCAGGGACAGCCACTGACGCCCTGCTGCTTATTC
AATGGTACGCAGGGAGGGGAGGGGAGGGGAGGGTGAGCTGAGATTCGGAGAACAGCAACCACTG
GTTGTGCTGTTAATGATTTTATACTATTGTTTATTCTTCTGTGATTAAAGTGTTTCAACCCTCT
ACTGTCTGTCTCTTTAGTAACTATCCCTGCTGCAGCTTTGGCTGCCTGAGCCTCCTCAGTGCTG
AGGTCATAGACATGCTCCATGATTAGGAAGTTTTCCATGGGCTGGAGAGTTCTTGCAGAGGACC
CAGCTCTGGTCTCTAGCCCTGATACAGGGTTTTAATGTAGACATATTTAATTGGTGTGCTAGCA
GGTTTTATATCAACTTGACACAAGTTATAGTCACTTTGAAAAGAGGGACCCTCAGATGAGAAAA
CTCCCCTAGATTGGCCAGTGGGCAAGCCTATATAGAGCATTTTCTTAACTGATGATTGACTGGG
GGCAGGCAGCCCATTGTGGGTATGGGGCCATCCCTGAACTGTTGGTCCTGGGGTTTATGAGGAA
TCAGAGCAAGCCATGGGGAGCAAGCCAAGGGCAGCACCCTCCATGACCTCTGCATGAGCTCCTG
CCTCCAGGTCCCTGCCCTATGTGAGTTCCTGCCCAGACTTGCTTCTGTGATGGACAATGCAGTG
GAAGTGTAAGCTGAATAAACCCATTCTTCCC

hide sequence

RefSeq Acc Id:

XM_006257374 ⟹ XP_006257436

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	130,860,535 - 130,897,868 (-)	NCBI
Rnor_6.0	7	141,386,933 - 141,424,349 (-)	NCBI
Rnor_5.0	X	115,891,039 - 115,929,166 (-)	NCBI

Sequence:

show sequence

CGGGCTGGGCGTCTGGGAGGACCCGAGGACGGAAGAGGGTGGCCGTAGGCCGGGCCCCGCCCCG
GGGCCGCCTTCCAGCGGGTTCTTTTTGCCTTGGCTGCCTCGGAGGCTGTGGCGGCAGTGGCCGC
CGGGCGCGCGTAAGATGGCGACTGCGGCGGCGGAAGCCCTGGGCCTCCTGTGGGGCTGGCTGTG
GAGCGGGCGCTTCTGGCTGCCTCAGAACGTGAGCTGGGCGGACCTGGAGGGCCCGGGCGACGGC
TACGGCTACCCGCGCGCCCGGCACGTGCTGTCGGTGTTCCCGCTGGCAGCAGGTCTCTTCTCCG
TGAGGATGCTGTTCGAGCGATTTATTGCTAAACCCTGTGCACTCCGTATTGGCATTGAAGACAG
TGCTGTCTACCAGGTGGAATCCAATGTCACCCTTGAGAAGGTGTTCACATCTATCTCTAAGTAT
CCTGATGAGAAAAGGCTGAAGGGCCTATCAAAGCAACTGGACTGGGATGTTCGAAAAATCCAAT
GCTGGTTTCGCCATCGGAGAAATCAGGACAAGCCTCCAACGCTCACTAAGTTCTGTGAGAGCAT
GTGGAGATTCACTTTCTATTTTTGTATCTTCTGCTACGGAGTCAGATTTCTCTGGTCGATGCCT
TGGCTCTGGGATACCCGACAGTGCTGGTACAACTATCCATATCAGCCACTCTCAAGAGAGCTCT
ATTACTACTATCTCACACAGCTGGCCTTCTACTGGTCCCTCGTGTTCTCTCAGTTTATAGATGT
TAAAAGAAAGGACTTCCTGATGATGTTTATGCATCATTTGATCGCCGTCACGCTCATCAGTTTC
TCCTACATCAACAACATGGTGCGAGTGGGAGCCATCATCTTGTGTCTGCATGACTCCGCCGACT
CCTTGCTAGAAGCTGCCAAGCTGGCCAATTACGCCAGACAGGAGCGGCTCTGTAACACCCTCTT
TGTGATCTTTGGTGCAGCTTTTATGGTTACTCGTCTAGGGATCTTCCCTTTGTGGATTCTGAAC
ACAACCCTCTTTGAGAGCTGGGAGATTATTGGGCCCTTTCCTTCCTGGTGGCTCTTCAATGGCC
TCCTCCTGATCCTACAGATGTTGCATGTCATCTGGTCCTACCTAATCGCACGAACTGCTTTTAA
AGCCTTGGTCCGGGGCAAGGTGTCTAAGGATGACCGCAGTGATGTAGAAAGCAGCTCAGAGGAA
GATGAGACCACACACACGAACAACCTCTCTGGCAGCAGTTCCAGCAACGGTGCCAACTGCATGA
ACGGCCGCATGGGAGGCAGCCACTTGGCTGAGGAGCAGGGGACTTGTAAAGCTGCTGGCAACCT
ACACTTTGGGGCCTCCCCACGTATACACTCCTGTGACTAGAGGGACCGCCAGGCACTGAGGAGA
ATCTGAGAAACAAATGTTTTTGTGTTTTAAAGAAACTCTGCCATTTTGTATTTAATGCCCTGGT
CCTTCAGTGACATCACTGGCTCTTTGTCTGTGTGTCTGTGCGTCTGTACATGTGCATCATGCAT
GTGGATGAGCGTCATCCACTAGGTTGGGCACAAGGCTGGATTACTAGTCAGTGTCTGGTCACTT
CTGAATCACCTCCGGTCCAGCGTTCGCTGTATCTTGAGTTAAGCTGTCTCCCAACCAGCTGTGT
CCTCTTTCCGTGGCTCTTGAGACTCTTCAGTTCCTGGTCCATGGAAGTCAGTGGTGCGGCCACT
TGGCTCCAGCACTTGGAGACTGTTCTTTTGGAGGAGGAAGTAATTTTCACCTGATGGAACACTC
TGGATAGACACCAGGATCACTGTAGCCACATGCCCCCTTCCTGCCACCCGACAGTGTCAGGGAC
AGCCACTGACGCCCTGCTGCTTATTCAATGGTACGCAGGGAGGGGAGGGGAGGGGAGGGTGAGC
TGAGATTCGGAGAACAGCAACCACTGGTTGTGCTGTTAATGATTTTATACTATTGTTTATTCTT
CTGTGATTAAAGTGTTTCAACCCTCTA

hide sequence

RefSeq Acc Id:

XM_006257375 ⟹ XP_006257437

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	130,860,535 - 130,897,979 (-)	NCBI
Rnor_6.0	7	141,386,932 - 141,424,375 (-)	NCBI
Rnor_5.0	X	115,891,039 - 115,929,166 (-)	NCBI

Sequence:

show sequence

GGAGGAGGCCAGGCCTGTGGGAGAGGCGGGCTGGGCGTCTGGGAGGACCCGAGGACGGAAGAGG
GTGGCCGTAGGCCGGGCCCCGCCCCGGGGCCGCCTTCCAGCGGGTTCTTTTTGCCTTGGCTGCC
TCGGAGGCTGTGGCGGCAGTGGCCGCCGGGCGCGCGTAAGATGGCGACTGCGGCGGCGGAAGCC
CTGGGCCTCCTGTGGGGCTGGCTGTGGAGCGGGCGCTTCTGGCTGCCTCAGAACGTGAGCTGGG
CGGACCTGGAGGGCCCGGGCGACGGCTACGGCTACCCGCGCGCCCGGCACGTGCTGTCGGTGTT
CCCGCTGGCAGCAGGTCTCTTCTCCGTGAGGATGCTGTTCGAGCGATTTATTGCTAAACCCTGT
GCACTCCGTATTGGCATTGAAGACAGTGCTGTCTACCAGGTGGAATCCAATGTCACCCTTGAGA
AGGTGTTCACATCTATCTCTAAGATGCCTTGGCTCTGGGATACCCGACAGTGCTGGTACAACTA
TCCATATCAGCCACTCTCAAGAGAGCTCTATTACTACTATCTCACACAGCTGGCCTTCTACTGG
TCCCTCGTGTTCTCTCAGTTTATAGATGTTAAAAGAAAGGACTTCCTGATGATGTTTATGCATC
ATTTGATCGCCGTCACGCTCATCAGTTTCTCCTACATCAACAACATGGTGCGAGTGGGAGCCAT
CATCTTGTGTCTGCATGACTCCGCCGACTCCTTGCTAGAAGCTGCCAAGCTGGCCAATTACGCC
AGACAGGAGCGGCTCTGTAACACCCTCTTTGTGATCTTTGGTGCAGCTTTTATGGTTACTCGTC
TAGGGATCTTCCCTTTGTGGATTCTGAACACAACCCTCTTTGAGAGCTGGGAGATTATTGGGCC
CTTTCCTTCCTGGTGGCTCTTCAATGGCCTCCTCCTGATCCTACAGATGTTGCATGTCATCTGG
TCCTACCTAATCGCACGAACTGCTTTTAAAGCCTTGGTCCGGGGCAAGGTGACCTACCCAGGAG
GGATTAGCCCCGGCTCTGTACCCTCTGCTCTTTTCTCACCTCCTTCCTCTTTTCTATGCCTGGT
GGCAGCTGGACAGTCCCATCCTCTGCATGTGTCTAAGGATGACCGCAGTGATGTAGAAAGCAGC
TCAGAGGAAGATGAGACCACACACACGAACAACCTCTCTGGCAGCAGTTCCAGCAACGGTGCCA
ACTGCATGAACGGCCGCATGGGAGGCAGCCACTTGGCTGAGGAGCAGGGGACTTGTAAAGCTGC
TGGCAACCTACACTTTGGGGCCTCCCCACGTATACACTCCTGTGACTAGAGGGACCGCCAGGCA
CTGAGGAGAATCTGAGAAACAAATGTTTTTGTGTTTTAAAGAAACTCTGCCATTTTGTATTTAA
TGCCCTGGTCCTTCAGTGACATCACTGGCTCTTTGTCTGTGTGTCTGTGCGTCTGTACATGTGC
ATCATGCATGTGGATGAGCGTCATCCACTAGGTTGGGCACAAGGCTGGATTACTAGTCAGTGTC
TGGTCACTTCTGAATCACCTCCGGTCCAGCGTTCGCTGTATCTTGAGTTAAGCTGTCTCCCAAC
CAGCTGTGTCCTCTTTCCGTGGCTCTTGAGACTCTTCAGTTCCTGGTCCATGGAAGTCAGTGGT
GCGGCCACTTGGCTCCAGCACTTGGAGACTGTTCTTTTGGAGGAGGAAGTAATTTTCACCTGAT
GGAACACTCTGGATAGACACCAGGATCACTGTAGCCACATGCCCCCTTCCTGCCACCCGACAGT
GTCAGGGACAGCCACTGACGCCCTGCTGCTTATTCAATGGTACGCAGGGAGGGGAGGGGAGGGG
AGGGTGAGCTGAGATTCGGAGAACAGCAACCACTGGTTGTGCTGTTAATGATTTTATACTATTG
TTTATTCTTCTGTGATTAAAGTGTTTCAACCCTCTAC

hide sequence

RefSeq Acc Id:

XM_039079707 ⟹ XP_038935635

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	130,860,535 - 130,897,748 (-)	NCBI

RefSeq Acc Id:

XM_039079708 ⟹ XP_038935636

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	130,860,535 - 130,897,535 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102463	(Get FASTA)	NCBI Sequence Viewer
	XP_006257436	(Get FASTA)	NCBI Sequence Viewer
	XP_006257437	(Get FASTA)	NCBI Sequence Viewer
	XP_038935635	(Get FASTA)	NCBI Sequence Viewer
	XP_038935636	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI66794	(Get FASTA)	NCBI Sequence Viewer
	EDL86967	(Get FASTA)	NCBI Sequence Viewer
	EDL86968	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001102463 ⟸ NM_001108993

- UniProtKB:

D4AA91 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MATAAAEALGLLWGWLWSGRFWLPQNVSWADLEGPGDGYGYPRARHVLSVFPLAAGLFSVRMLF
ERFIAKPCALRIGIEDSAVYQVESNVTLEKVFTSISKYPDEKRLKGLSKQLDWDVRKIQCWFRH
RRNQDKPPTLTKFCESMWRFTFYFCIFCYGVRFLWSMPWLWDTRQCWYNYPYQPLSRELYYYYL
TQLAFYWSLVFSQFIDVKRKDFLMMFMHHLIAVTLISFSYINNMVRVGAIILCLHDSADSLLEA
AKLANYARQERLCNTLFVIFGAAFMVTRLGIFPLWILNTTLFESWEIIGPFPSWWLFNGLLLIL
QMLHVIWSYLIARTAFKALVRGKVTYPGGISPGSVPSALFSPPSSFLCLVAAGQSHPLHVSKDD
RSDVESSSEEDETTHTNNLSGSSSSNGANCMNGRMGGSHLAEEQGTCKAAGNLHFGASPRIHSC
D

hide sequence

RefSeq Acc Id:

XP_006257437 ⟸ XM_006257375

- Peptide Label:

isoform X2

- Sequence:

show sequence

MATAAAEALGLLWGWLWSGRFWLPQNVSWADLEGPGDGYGYPRARHVLSVFPLAAGLFSVRMLF
ERFIAKPCALRIGIEDSAVYQVESNVTLEKVFTSISKMPWLWDTRQCWYNYPYQPLSRELYYYY
LTQLAFYWSLVFSQFIDVKRKDFLMMFMHHLIAVTLISFSYINNMVRVGAIILCLHDSADSLLE
AAKLANYARQERLCNTLFVIFGAAFMVTRLGIFPLWILNTTLFESWEIIGPFPSWWLFNGLLLI
LQMLHVIWSYLIARTAFKALVRGKVTYPGGISPGSVPSALFSPPSSFLCLVAAGQSHPLHVSKD
DRSDVESSSEEDETTHTNNLSGSSSSNGANCMNGRMGGSHLAEEQGTCKAAGNLHFGASPRIHS
CD

hide sequence

RefSeq Acc Id:	XP_006257436 ⟸ XM_006257374
- Peptide Label:	isoform X1
- UniProtKB:	B2RYI9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MATAAAEALGLLWGWLWSGRFWLPQNVSWADLEGPGDGYGYPRARHVLSVFPLAAGLFSVRMLF ERFIAKPCALRIGIEDSAVYQVESNVTLEKVFTSISKYPDEKRLKGLSKQLDWDVRKIQCWFRH RRNQDKPPTLTKFCESMWRFTFYFCIFCYGVRFLWSMPWLWDTRQCWYNYPYQPLSRELYYYYL TQLAFYWSLVFSQFIDVKRKDFLMMFMHHLIAVTLISFSYINNMVRVGAIILCLHDSADSLLEA AKLANYARQERLCNTLFVIFGAAFMVTRLGIFPLWILNTTLFESWEIIGPFPSWWLFNGLLLIL QMLHVIWSYLIARTAFKALVRGKVSKDDRSDVESSSEEDETTHTNNLSGSSSSNGANCMNGRMG GSHLAEEQGTCKAAGNLHFGASPRIHSCD hide sequence

RefSeq Acc Id:

ENSRNOP00000070455 ⟸ ENSRNOT00000080109

RefSeq Acc Id:

ENSRNOP00000074498 ⟸ ENSRNOT00000084292

RefSeq Acc Id:	XP_038935635 ⟸ XM_039079707
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038935636 ⟸ XM_039079708
- Peptide Label:	isoform X3

RefSeq Acc Id:

ENSRNOP00000097956 ⟸ ENSRNOT00000097394

Protein Domains

Homeobox TLC

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4AA91-F1-model_v2	AlphaFold	D4AA91	1-449	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695653

Promoter ID:

EPDNEW_R6175

Type:

initiation region

Name:

Cers5_1

Description:

ceramide synthase 5

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	141,424,258 - 141,424,318	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311597	AgrOrtholog
BioCyc Gene	G2FUF-32057	BioCyc
Ensembl Genes	ENSRNOG00000052990	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000070455.2	UniProtKB/TrEMBL
	ENSRNOP00000074498	ENTREZGENE
	ENSRNOP00000074498.1	UniProtKB/TrEMBL
	ENSRNOP00000097956	ENTREZGENE
	ENSRNOP00000097956.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000080109.2	UniProtKB/TrEMBL
	ENSRNOT00000084292	ENTREZGENE
	ENSRNOT00000084292.2	UniProtKB/TrEMBL
	ENSRNOT00000097394	ENTREZGENE
	ENSRNOT00000097394.1	UniProtKB/TrEMBL
Gene3D-CATH	Homeodomain-like	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7937721	IMAGE-MGC_LOAD
InterPro	Homeobox	UniProtKB/TrEMBL
	Homeodomain-like	UniProtKB/TrEMBL
	Longevity_assurance_LAG1_LAC1	UniProtKB/TrEMBL
	TLC-dom	UniProtKB/TrEMBL
KEGG Report	rno:366984	UniProtKB/TrEMBL
MGC_CLONE	MGC:188589	IMAGE-MGC_LOAD
NCBI Gene	366984	ENTREZGENE
PANTHER	CERAMIDE SYNTHASE 5	UniProtKB/TrEMBL
	PTHR12560	UniProtKB/TrEMBL
Pfam	Homeobox	UniProtKB/TrEMBL
	TRAM_LAG1_CLN8	UniProtKB/TrEMBL
PhenoGen	Cers5	PhenoGen
PIRSF	LAG1_LAC1	UniProtKB/TrEMBL
PROSITE	HOMEOBOX_2	UniProtKB/TrEMBL
	TLC	UniProtKB/TrEMBL
SMART	TLC	UniProtKB/TrEMBL
Superfamily-SCOP	Homeodomain_like	UniProtKB/TrEMBL
UniProt	A0A0G2JXZ1_RAT	UniProtKB/TrEMBL
	A0A8I6AV69_RAT	UniProtKB/TrEMBL
	B2RYI9	ENTREZGENE, UniProtKB/TrEMBL
	D4AA91	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-08-02	Cers5	ceramide synthase 5	Lass5	LAG1 homolog, ceramide synthase 5	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-11	Lass5	LAG1 homolog, ceramide synthase 5	Lass5_predicted	longevity assurance homolog 5 (S. cerevisiae) (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-12	Lass5_predicted	longevity assurance homolog 5 (S. cerevisiae) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar