Spag9 (sperm associated antigen 9) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Spag9 (sperm associated antigen 9) Rattus norvegicus
Analyze
Symbol: Spag9
Name: sperm associated antigen 9
RGD ID: 1311289
Description: Predicted to enable several functions, including kinesin binding activity; protein kinase binding activity; and signaling adaptor activity. Involved in negative regulation of dendrite extension; negative regulation of neuron differentiation; and negative regulation of protein phosphorylation. Predicted to be located in several cellular components, including centriolar satellite; lysosomal membrane; and perinuclear region of cytoplasm. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in hepatocellular carcinoma and liver cirrhosis. Orthologous to human SPAG9 (sperm associated antigen 9); PARTICIPATES IN p38 MAPK signaling pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: C-Jun-amino-terminal kinase-interacting protein 4; LOC360600
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81079,440,311 - 79,574,709 (+)NCBIGRCr8
mRatBN7.21078,943,439 - 79,077,797 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1078,943,479 - 79,077,797 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1083,554,259 - 83,682,504 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01083,052,366 - 83,180,614 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01078,523,809 - 78,695,353 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01081,693,736 - 81,827,562 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1081,693,770 - 81,827,562 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01081,527,102 - 81,660,894 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41082,649,289 - 82,762,795 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11082,642,730 - 82,774,629 (+)NCBI
Celera1077,760,603 - 77,867,282 (+)NCBICelera
Cytogenetic Map10q26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
(S)-nicotine  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
arsenite(3-)  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
cadmium atom  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloroprene  (EXP)
choline  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) sulfate  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
crotonaldehyde  (ISO)
cyclosporin A  (ISO)
disodium selenite  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
entinostat  (ISO)
ethanol  (ISO)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
isoprenaline  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lipopolysaccharide  (ISO)
methamphetamine  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
methylparaben  (ISO)
nicotine  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
pirinixic acid  (ISO)
resveratrol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
streptozocin  (EXP)
succimer  (ISO)
sunitinib  (ISO)
testosterone enanthate  (ISO)
thimerosal  (ISO)
thioacetamide  (EXP)
topotecan  (EXP,ISO)
trichostatin A  (ISO)
tungsten  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vorinostat  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
centriolar satellite  (IEA,ISO)
cytoplasm  (IBA,ISO)
cytosol  (IEA,ISO)
lysosomal membrane  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Sperm-associated antigen 9 is a promising marker for early diagnosis of endometrial cancer. Baser E, etal., Asian Pac J Cancer Prev. 2013;14(12):7635-8. doi: 10.7314/apjcp.2013.14.12.7635.
2. Mechanisms and functions of p38 MAPK signalling. Cuadrado A and Nebreda AR, Biochem J. 2010 Aug 1;429(3):403-17. doi: 10.1042/BJ20100323.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Serum levels of anti-sperm-associated antigen 9 antibody are elevated in patients with hepatocellular carcinoma. Ren B, etal., Oncol Lett. 2017 Dec;14(6):7608-7614. doi: 10.3892/ol.2017.7152. Epub 2017 Oct 9.
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
8. Regulation of neurite outgrowth by interactions between the scaffolding protein, JNK-associated leucine zipper protein, and neuronal growth-associated protein superior cervical ganglia clone 10. Xu H, etal., J Biol Chem. 2010 Feb 5;285(6):3548-53. doi: 10.1074/jbc.M109.064113. Epub 2009 Dec 3.
Additional References at PubMed
PMID:12391307   PMID:12477932   PMID:15767678   PMID:18826971   PMID:19056739   PMID:19056867   PMID:19244314   PMID:20004020   PMID:20160094   PMID:23376485   PMID:29146937  


Genomics

Comparative Map Data
Spag9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81079,440,311 - 79,574,709 (+)NCBIGRCr8
mRatBN7.21078,943,439 - 79,077,797 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1078,943,479 - 79,077,797 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1083,554,259 - 83,682,504 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01083,052,366 - 83,180,614 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01078,523,809 - 78,695,353 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01081,693,736 - 81,827,562 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1081,693,770 - 81,827,562 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01081,527,102 - 81,660,894 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41082,649,289 - 82,762,795 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11082,642,730 - 82,774,629 (+)NCBI
Celera1077,760,603 - 77,867,282 (+)NCBICelera
Cytogenetic Map10q26NCBI
SPAG9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381750,962,174 - 51,120,868 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1750,962,174 - 51,120,868 (-)EnsemblGRCh38hg38GRCh38
GRCh371749,039,535 - 49,198,229 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361746,397,987 - 46,553,094 (-)NCBINCBI36Build 36hg18NCBI36
Build 341746,396,280 - 46,479,270NCBI
Celera1745,500,809 - 45,659,482 (-)NCBICelera
Cytogenetic Map17q21.33NCBI
HuRef1744,409,321 - 44,567,701 (-)NCBIHuRef
CHM1_11749,103,529 - 49,262,201 (-)NCBICHM1_1
T2T-CHM13v2.01751,829,515 - 51,988,191 (-)NCBIT2T-CHM13v2.0
Spag9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391193,886,794 - 94,016,919 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1193,886,917 - 94,016,911 (+)EnsemblGRCm39 Ensembl
GRCm381193,996,046 - 94,126,093 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1193,996,091 - 94,126,085 (+)EnsemblGRCm38mm10GRCm38
MGSCv371193,857,405 - 93,987,397 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361193,812,181 - 93,942,173 (+)NCBIMGSCv36mm8
Celera11103,596,032 - 103,742,397 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1158.9NCBI
Spag9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545110,800,128 - 10,895,400 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545110,800,251 - 10,895,400 (+)NCBIChiLan1.0ChiLan1.0
SPAG9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21967,150,865 - 67,309,121 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11771,957,919 - 72,116,131 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01745,053,292 - 45,211,488 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11749,924,650 - 50,081,918 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1749,924,650 - 50,081,918 (-)Ensemblpanpan1.1panPan2
SPAG9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1926,820,381 - 26,966,315 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl926,820,002 - 26,966,300 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha926,148,726 - 26,294,511 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0927,613,837 - 27,760,017 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl927,613,700 - 27,760,276 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1926,380,745 - 26,526,372 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0926,639,936 - 26,785,790 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0926,769,987 - 26,915,874 (-)NCBIUU_Cfam_GSD_1.0
Spag9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560226,278,463 - 26,425,767 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649010,663,122 - 10,799,474 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649010,663,155 - 10,796,658 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPAG9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1227,202,088 - 27,370,405 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11227,225,377 - 27,370,337 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21227,366,725 - 27,438,124 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SPAG9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11642,224,565 - 42,384,160 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1642,224,697 - 42,384,749 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607712,934,337 - 13,097,422 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Spag9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247956,745,537 - 6,863,173 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247956,748,513 - 6,863,201 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Spag9
370 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:403
Count of miRNA genes:230
Interacting mature miRNAs:297
Transcripts:ENSRNOT00000003777
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102242750090627625Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102652195798952741Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
1576319Cia29Collagen induced arthritis QTL 29joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103397392178973921Rat
2317042Aia20Adjuvant induced arthritis QTL 203.38joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)103756507982565079Rat
2317043Aia7Adjuvant induced arthritis QTL 73.82joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)103756507982565079Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040035094102359817Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)104114263386142633Rat
61463Bp12Blood pressure QTL 126.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104133325886333258Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)14232313287323132Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)14232313287323132Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)14232313287323132Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)14232313287323132Rat
70198BpQTLcluster9Blood pressure QTL cluster 92.94arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)104232313287323132Rat
6893342Cm78Cardiac mass QTL 780.10.88heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)104287676679813922Rat
9589030Epfw9Epididymal fat weight QTL 919.240.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)104444169989441699Rat
7411614Foco18Food consumption QTL 180.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)104444169989441699Rat
8694173Bw149Body weight QTL 1494.380.001body mass (VT:0001259)body weight gain (CMO:0000420)104444169989441699Rat
2300218Hpcl2Hepatic cholesterol level QTL 2liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)104502965095600334Rat
631547Bp87Blood pressure QTL 874.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104736947092369470Rat
2293705Bmd25Bone mineral density QTL 257.10.0001femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)104944455181709989Rat
7207811Bmd90Bone mineral density QTL 905.2femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)104944455181709989Rat
2293652Bmd22Bone mineral density QTL 224.90.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)104944455181709989Rat
2293669Bmd33Bone mineral density QTL 334.50.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)104944455181709989Rat
2293679Bmd30Bone mineral density QTL 303.50.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)104944455181709989Rat
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105057470795574707Rat
70364Bp72Blood pressure QTL 72arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105112110096121100Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1051770177107211142Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1051770177107211142Rat
1359017Hrtrt21Heart rate QTL 212.4heart pumping trait (VT:2000009)heart rate (CMO:0000002)105177294096772940Rat
631530Tls3T-lymphoma susceptibility QTL 300.0001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)105177461295600334Rat
631535Cm51Cardiac mass QTL 513heart mass (VT:0007028)calculated heart weight (CMO:0000073)105178628291669536Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1053797385107211142Rat
70164Bw21Body weight QTL 214.360.00005body mass (VT:0001259)body weight (CMO:0000012)105379749498952626Rat
1354608Cm33Cardiac mass QTL 332.8heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)105480929299809292Rat
2312662Slep8Serum leptin concentration QTL 80.05blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1057134272102134272Rat
2312668Scl65Serum cholesterol level QTL 650.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1057134272102134272Rat
2312672Insul15Insulin level QTL 150.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1057134272102134272Rat
1549831Bss6Bone structure and strength QTL 64lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)1057576521102576521Rat
2293698Bss43Bone structure and strength QTL 435.330.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1059209888104209888Rat
70363Bp71Blood pressure QTL 710.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)106134527681714865Rat
2306970Anxrr22Anxiety related response QTL 225.95fear/anxiety-related behavior trait (VT:1000241)number of periods of voluntary immobility (CMO:0001045)106134527698211570Rat
6893336Cm75Cardiac mass QTL 750.10.87heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)106134527699703528Rat
1558643Cm44Cardiac mass QTL 444.80.0000368heart mass (VT:0007028)heart wet weight (CMO:0000069)106134527699703528Rat
61402Niddm3Non-insulin dependent diabetes mellitus QTL 34.58blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)106134541382564856Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062057807107057807Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062057807107057807Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
2298481Eau9Experimental allergic uveoretinitis QTL 90.0169uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)106592723382565079Rat
1357344Bp249Blood pressure QTL 2490.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)106674365598003205Rat
2317029Aia19Adjuvant induced arthritis QTL 192.98joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1066978955107211142Rat
2317039Aia6Adjuvant induced arthritis QTL 64.31joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)1066978955107211142Rat
10450498Bp384Blood pressure QTL 3840.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1067750049107211142Rat
1642980Bp300Blood pressure QTL 300arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068383129107211142Rat
61396Bp9Blood pressure QTL 94.80.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068420376107211142Rat
2300172Bmd57Bone mineral density QTL 579.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1069738412107211142Rat
2293646Bss25Bone structure and strength QTL 2510.960.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1069738412107211142Rat
2293663Bss33Bone structure and strength QTL 339.340.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1069738412107211142Rat
6893366Bw106Body weight QTL 1060.30.47body mass (VT:0001259)body weight (CMO:0000012)1070199100107211142Rat
70193Mcs7Mammary carcinoma susceptibility QTL 72.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072224939107211142Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1072224939107211142Rat
2306793Ean5Experimental allergic neuritis QTL 54.7nervous system integrity trait (VT:0010566)IFNG-secreting splenocyte count (CMO:0002122)107255241693995749Rat
12880053Cm104Cardiac mass QTL 1040.009heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)107345299283463334Rat
1358188Ept9Estrogen-induced pituitary tumorigenesis QTL 93.9pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)107345313696120911Rat
2292617Ept18Estrogen-induced pituitary tumorigenesis QTL 183.9pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)107345313696120911Rat
12880050Am10Aortic mass QTL 100.016aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)107437208484007272Rat
1579919Bp281Blood pressure QTL 2810.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107437208494965338Rat
631537Oia4Oil induced arthritis QTL 4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)107563188787055282Rat
2325836Bp346Blood pressure QTL 3460.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107624608584007272Rat
10450495Bp383Blood pressure QTL 3830.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107624608594965338Rat
2292438Bp311Blood pressure QTL 311arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1076246085107211142Rat
1302404Cia27Collagen induced arthritis QTL 272.60.0045joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)1076452683107211142Rat
4889492Pancm2Pancreatic morphology QTL 23.2pancreatic beta cell morphology trait (VT:0005217)ratio of insulin-positive cell area to total area of splenic region of pancreas (CMO:0001814)1076748906107211142Rat
724516Uae17Urinary albumin excretion QTL 173.6urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)107821062285220348Rat
1300107Rf18Renal function QTL 183.41urine output (VT:0003620)timed urine volume (CMO:0000260)107877551698279596Rat
1358915Stresp7Stress response QTL 73.52blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)107889965587307728Rat

Markers in Region
D10Rat114  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21078,952,643 - 78,952,799 (+)MAPPERmRatBN7.2
Rnor_6.01081,702,382 - 81,702,537NCBIRnor6.0
Rnor_5.01081,535,714 - 81,535,869UniSTSRnor5.0
RGSC_v3.41082,637,373 - 82,637,529RGDRGSC3.4
RGSC_v3.41082,637,374 - 82,637,529UniSTSRGSC3.4
RGSC_v3.11082,651,743 - 82,651,899RGD
Celera1077,748,871 - 77,749,020UniSTS
RH 3.4 Map10611.6RGD
RH 3.4 Map10611.6UniSTS
RH 2.0 Map10885.5RGD
SHRSP x BN Map1058.54RGD
Cytogenetic Map10q26UniSTS
RH140651  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21079,044,881 - 79,045,500 (+)MAPPERmRatBN7.2
Rnor_6.01081,794,650 - 81,795,268NCBIRnor6.0
Rnor_5.01081,627,982 - 81,628,600UniSTSRnor5.0
RGSC_v3.41082,729,891 - 82,730,509UniSTSRGSC3.4
Celera1077,834,378 - 77,834,996UniSTS
RH 3.4 Map10629.6UniSTS
Cytogenetic Map10q26UniSTS
AA925269  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21079,077,643 - 79,077,765 (+)MAPPERmRatBN7.2
Rnor_6.01081,827,409 - 81,827,530NCBIRnor6.0
Rnor_5.01081,660,741 - 81,660,862UniSTSRnor5.0
RGSC_v3.41082,762,650 - 82,762,771UniSTSRGSC3.4
Celera1077,867,129 - 77,867,250UniSTS
RH 3.4 Map10632.7UniSTS
Cytogenetic Map10q26UniSTS
RH134783  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21079,026,816 - 79,027,003 (+)MAPPERmRatBN7.2
Rnor_6.01081,776,615 - 81,776,801NCBIRnor6.0
Rnor_5.01081,609,947 - 81,610,133UniSTSRnor5.0
RGSC_v3.41082,711,829 - 82,712,015UniSTSRGSC3.4
Celera1077,816,316 - 77,816,502UniSTS
RH 3.4 Map10631.2UniSTS
Cytogenetic Map10q26UniSTS
RH140024  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21079,065,706 - 79,065,887 (+)MAPPERmRatBN7.2
Rnor_6.01081,815,473 - 81,815,653NCBIRnor6.0
Rnor_5.01081,648,805 - 81,648,985UniSTSRnor5.0
RGSC_v3.41082,750,714 - 82,750,894UniSTSRGSC3.4
Celera1077,855,198 - 77,855,378UniSTS
RH 3.4 Map10632.3UniSTS
Cytogenetic Map10q26UniSTS
BE100739  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21079,066,035 - 79,066,209 (+)MAPPERmRatBN7.2
Rnor_6.01081,815,802 - 81,815,976NCBIRnor6.0
Rnor_5.01081,649,134 - 81,649,308UniSTSRnor5.0
RGSC_v3.41082,751,043 - 82,751,217UniSTSRGSC3.4
Celera1077,855,527 - 77,855,701UniSTS
RH 3.4 Map10625.7UniSTS
Cytogenetic Map10q26UniSTS
AI104446  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21079,075,066 - 79,075,156 (+)MAPPERmRatBN7.2
Rnor_6.01081,824,832 - 81,824,921NCBIRnor6.0
Rnor_5.01081,658,164 - 81,658,253UniSTSRnor5.0
RGSC_v3.41082,760,073 - 82,760,162UniSTSRGSC3.4
Celera1077,864,551 - 77,864,640UniSTS
RH 3.4 Map10630.8UniSTS
Cytogenetic Map10q26UniSTS
AA925269  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21079,077,464 - 79,077,672 (+)MAPPERmRatBN7.2
Rnor_6.01081,827,230 - 81,827,437NCBIRnor6.0
Rnor_5.01081,660,562 - 81,660,769UniSTSRnor5.0
RGSC_v3.41082,762,471 - 82,762,678UniSTSRGSC3.4
Celera1077,866,950 - 77,867,157UniSTS
RH 3.4 Map10632.7UniSTS
Cytogenetic Map10q26UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 10 74 35 40 11 8
Low 1 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001108290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006247143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006247146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006247147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006247150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006247151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006247153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006247154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC168954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB605937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB748350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM062671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM110716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000003777   ⟹   ENSRNOP00000003777
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1078,943,479 - 79,077,797 (+)Ensembl
Rnor_6.0 Ensembl1081,693,770 - 81,827,562 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000085681   ⟹   ENSRNOP00000073784
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1078,943,479 - 79,077,659 (+)Ensembl
Rnor_6.0 Ensembl1081,693,885 - 81,827,559 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000093765   ⟹   ENSRNOP00000093662
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1078,943,479 - 79,077,797 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000094632   ⟹   ENSRNOP00000077739
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1078,943,479 - 79,077,797 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000095843   ⟹   ENSRNOP00000086317
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1079,001,901 - 79,077,797 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000106993   ⟹   ENSRNOP00000096035
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1078,943,479 - 79,077,797 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000113361   ⟹   ENSRNOP00000096462
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1079,001,901 - 79,077,797 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000117102   ⟹   ENSRNOP00000077913
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1078,943,479 - 79,077,797 (+)Ensembl
RefSeq Acc Id: NM_001108290   ⟹   NP_001101760
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81079,440,377 - 79,574,709 (+)NCBI
mRatBN7.21078,943,479 - 79,077,797 (+)NCBI
Rnor_6.01081,693,770 - 81,827,562 (+)NCBI
Rnor_5.01081,527,102 - 81,660,894 (+)NCBI
RGSC_v3.41082,649,289 - 82,762,795 (+)RGD
Celera1077,760,603 - 77,867,282 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006247146   ⟹   XP_006247208
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81079,440,311 - 79,574,709 (+)NCBI
mRatBN7.21078,943,633 - 79,077,797 (+)NCBI
Rnor_6.01081,693,924 - 81,827,562 (+)NCBI
Rnor_5.01081,527,102 - 81,660,894 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006247147   ⟹   XP_006247209
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81079,440,311 - 79,574,709 (+)NCBI
mRatBN7.21078,943,633 - 79,077,797 (+)NCBI
Rnor_6.01081,693,924 - 81,827,562 (+)NCBI
Rnor_5.01081,527,102 - 81,660,894 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006247150   ⟹   XP_006247212
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81079,498,705 - 79,574,709 (+)NCBI
mRatBN7.21079,001,889 - 79,077,797 (+)NCBI
Rnor_6.01081,751,645 - 81,827,562 (+)NCBI
Rnor_5.01081,527,102 - 81,660,894 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006247151   ⟹   XP_006247213
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81079,498,659 - 79,574,709 (+)NCBI
mRatBN7.21079,002,047 - 79,077,797 (+)NCBI
Rnor_6.01081,751,645 - 81,827,562 (+)NCBI
Rnor_5.01081,527,102 - 81,660,894 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006247153   ⟹   XP_006247215
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81079,498,705 - 79,574,709 (+)NCBI
mRatBN7.21079,002,047 - 79,077,797 (+)NCBI
Rnor_6.01081,751,645 - 81,827,562 (+)NCBI
Rnor_5.01081,527,102 - 81,660,894 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006247154   ⟹   XP_006247216
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81079,498,659 - 79,574,709 (+)NCBI
mRatBN7.21079,002,047 - 79,077,797 (+)NCBI
Rnor_6.01081,751,645 - 81,827,562 (+)NCBI
Rnor_5.01081,527,102 - 81,660,894 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039086384   ⟹   XP_038942312
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81079,440,311 - 79,574,709 (+)NCBI
mRatBN7.21078,943,633 - 79,077,797 (+)NCBI
RefSeq Acc Id: XM_063269405   ⟹   XP_063125475
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81079,440,311 - 79,574,709 (+)NCBI
RefSeq Acc Id: XM_063269406   ⟹   XP_063125476
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81079,440,311 - 79,574,709 (+)NCBI
RefSeq Acc Id: XM_063269407   ⟹   XP_063125477
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81079,440,311 - 79,574,709 (+)NCBI
RefSeq Acc Id: XM_063269408   ⟹   XP_063125478
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81079,440,311 - 79,574,709 (+)NCBI
RefSeq Acc Id: XM_063269409   ⟹   XP_063125479
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81079,498,775 - 79,574,709 (+)NCBI
RefSeq Acc Id: XM_063269410   ⟹   XP_063125480
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81079,498,705 - 79,574,709 (+)NCBI
RefSeq Acc Id: XM_063269412   ⟹   XP_063125482
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81079,472,156 - 79,574,709 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001101760   ⟸   NM_001108290
- UniProtKB: A0A8I5Y1R0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006247208   ⟸   XM_006247146
- Peptide Label: isoform X5
- UniProtKB: A0A8I6B3N0 (UniProtKB/TrEMBL),   A0A0G2K6E8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006247209   ⟸   XM_006247147
- Peptide Label: isoform X7
- UniProtKB: A0A8I5Y1R0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006247212   ⟸   XM_006247150
- Peptide Label: isoform X10
- UniProtKB: A0A8I6B484 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006247215   ⟸   XM_006247153
- Peptide Label: isoform X13
- UniProtKB: A0A8I6B484 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006247213   ⟸   XM_006247151
- Peptide Label: isoform X11
- UniProtKB: A0A8I6B484 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006247216   ⟸   XM_006247154
- Peptide Label: isoform X14
- UniProtKB: A0A8I6B484 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000073784   ⟸   ENSRNOT00000085681
RefSeq Acc Id: ENSRNOP00000003777   ⟸   ENSRNOT00000003777
RefSeq Acc Id: XP_038942312   ⟸   XM_039086384
- Peptide Label: isoform X6
- UniProtKB: A0A8I5Y1R0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000096035   ⟸   ENSRNOT00000106993
RefSeq Acc Id: ENSRNOP00000086317   ⟸   ENSRNOT00000095843
RefSeq Acc Id: ENSRNOP00000093662   ⟸   ENSRNOT00000093765
RefSeq Acc Id: ENSRNOP00000096462   ⟸   ENSRNOT00000113361
RefSeq Acc Id: ENSRNOP00000077913   ⟸   ENSRNOT00000117102
RefSeq Acc Id: ENSRNOP00000077739   ⟸   ENSRNOT00000094632
RefSeq Acc Id: XP_063125475   ⟸   XM_063269405
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063125477   ⟸   XM_063269407
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063125476   ⟸   XM_063269406
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZJK4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125478   ⟸   XM_063269408
- Peptide Label: isoform X4
- UniProtKB: E9PSJ4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125482   ⟸   XM_063269412
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063125480   ⟸   XM_063269410
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063125479   ⟸   XM_063269409
- Peptide Label: isoform X8
Protein Domains
RH1   RH2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K6E8-F1-model_v2 AlphaFold A0A0G2K6E8 1-1352 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697600
Promoter ID:EPDNEW_R8123
Type:multiple initiation site
Name:Spag9_1
Description:sperm associated antigen 9
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01081,693,748 - 81,693,808EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311289 AgrOrtholog
BioCyc Gene G2FUF-23635 BioCyc
Ensembl Genes ENSRNOG00000002749 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000003777 ENTREZGENE
  ENSRNOT00000003777.7 UniProtKB/TrEMBL
  ENSRNOT00000085681.2 UniProtKB/TrEMBL
  ENSRNOT00000093765.1 UniProtKB/TrEMBL
  ENSRNOT00000094632.1 UniProtKB/TrEMBL
  ENSRNOT00000095843.1 UniProtKB/TrEMBL
  ENSRNOT00000106993.1 UniProtKB/TrEMBL
  ENSRNOT00000113361.1 UniProtKB/TrEMBL
  ENSRNOT00000117102.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.1770 UniProtKB/TrEMBL
  2.130.10.10 UniProtKB/TrEMBL
  arf6 gtpase in complex with a specific effector, jip4 UniProtKB/TrEMBL
InterPro JIP3/JIP4 UniProtKB/TrEMBL
  JIP_LZII UniProtKB/TrEMBL
  JNK/Rab-associated_protein-1_N UniProtKB/TrEMBL
  RH1 UniProtKB/TrEMBL
  RH2 UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene 360600 ENTREZGENE
PANTHER C-JUN-AMINO-TERMINAL KINASE-INTERACTING PROTEIN 4 UniProtKB/TrEMBL
  PTHR13886 UniProtKB/TrEMBL
Pfam JIP_LZII UniProtKB/TrEMBL
  Jnk-SapK_ap_N UniProtKB/TrEMBL
  WD40_2 UniProtKB/TrEMBL
PhenoGen Spag9 PhenoGen
PROSITE RH1 UniProtKB/TrEMBL
  RH2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000002749 RatGTEx
Superfamily-SCOP WD40_like UniProtKB/TrEMBL
UniProt A0A0G2K6E8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y1R0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZJK4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A5S1_RAT UniProtKB/TrEMBL
  A0A8I6AXC7_RAT UniProtKB/TrEMBL
  A0A8I6B3N0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6B484 ENTREZGENE, UniProtKB/TrEMBL
  E9PSJ4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Spag9  sperm associated antigen 9   Spag9_predicted  sperm associated antigen 9 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Spag9_predicted  sperm associated antigen 9 (predicted)      Symbol and Name status set to approved 70820 APPROVED