Aars2 (alanyl-tRNA synthetase 2, mitochondrial)

Gene: Aars2 (alanyl-tRNA synthetase 2, mitochondrial) Rattus norvegicus

Analyze

Symbol:

Aars2

Name:

alanyl-tRNA synthetase 2, mitochondrial

RGD ID:

1310617

Description:

Predicted to enable alanine-tRNA ligase activity and aminoacyl-tRNA editing activity. Predicted to be involved in mitochondrial alanyl-tRNA aminoacylation. Predicted to be located in cytoplasm. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 8 and progressive leukoencephalopathy with ovarian failure. Orthologous to human AARS2 (alanyl-tRNA synthetase 2, mitochondrial); PARTICIPATES IN alanine metabolic pathway; lactic acidosis pathway; primary hyperoxaluria type 1 pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; aconitine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

Aarsl; alanine--tRNA ligase; alanine--tRNA ligase, mitochondrial; alanyl-tRNA synthetase 2, mitochondrial (putative); alanyl-tRNA synthetase like; alanyl-tRNA synthetase, mitochondrial; AlaRS; LOC301254; probable alanyl-tRNA synthetase, mitochondrial

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	22,981,880 - 22,993,536 (-)	NCBI		GRCr8
mRatBN7.2	9	15,484,639 - 15,496,116 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	15,297,531 - 15,496,090 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	24,071,579 - 24,082,667 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	29,134,257 - 29,145,345 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	27,435,015 - 27,446,103 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	17,869,301 - 17,881,762 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	17,869,124 - 17,880,706 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	16,755,842 - 16,769,796 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	11,085,368 - 11,096,426 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	11,083,044 - 11,093,739 (-)	NCBI
Celera	9	13,228,189 - 13,239,255 (-)	NCBI		Celera
Cytogenetic Map	9	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

combined oxidative phosphorylation deficiency (ISO)

combined oxidative phosphorylation deficiency 8 (ISO)

dilated cardiomyopathy 1G (ISO)

genetic disease (ISO)

hypertrophic cardiomyopathy 9 (ISO)

Lung Agenesis (ISO)

neurodegeneration with brain iron accumulation (ISO)

progressive leukoencephalopathy with ovarian failure (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3-chloropropane-1,2-diol (EXP)

4,4'-sulfonyldiphenol (ISO)

aconitine (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

Butylparaben (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

dicrotophos (ISO)

epoxiconazole (ISO)

ivermectin (ISO)

lipopolysaccharide (ISO)

methylparaben (ISO)

N-methyl-4-phenylpyridinium (ISO)

paracetamol (ISO)

sodium fluoride (ISO)

thioacetamide (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

alanyl-tRNA aminoacylation (IBA,IEA)

aminoacyl-tRNA metabolism involved in translational fidelity (IEA)

mitochondrial alanyl-tRNA aminoacylation (IEA,ISO)

Cellular Component

mitochondrion (IBA,IEA,ISO,ISS)

Molecular Function

alanine-tRNA ligase activity (IBA,IEA,ISO)

aminoacyl-tRNA editing activity (IBA,IEA)

ATP binding (IEA)

protein binding (ISO)

tRNA binding (IEA)

zinc ion binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

alanine metabolic pathway (ISO)

aminoacyl-tRNA biosynthetic pathway (IEA)

lactic acidosis pathway (ISO)

primary hyperoxaluria type 1 pathway (ISO)

pyruvate carboxylase deficiency pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
3.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
4.	SMPDB Annotation Import Pipeline	Pipeline to import SMPDB annotations from SMPDB into RGD
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:18614015	PMID:21549344

Genomics

Comparative Map Data

Aars2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	22,981,880 - 22,993,536 (-)	NCBI		GRCr8
mRatBN7.2	9	15,484,639 - 15,496,116 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	15,297,531 - 15,496,090 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	24,071,579 - 24,082,667 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	29,134,257 - 29,145,345 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	27,435,015 - 27,446,103 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	17,869,301 - 17,881,762 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	17,869,124 - 17,880,706 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	16,755,842 - 16,769,796 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	11,085,368 - 11,096,426 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	11,083,044 - 11,093,739 (-)	NCBI
Celera	9	13,228,189 - 13,239,255 (-)	NCBI		Celera
Cytogenetic Map	9	q12	NCBI

AARS2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	44,298,731 - 44,313,347 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	44,298,731 - 44,313,347 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	44,266,468 - 44,281,084 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	44,374,441 - 44,389,041 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	6	45,819,616 - 45,834,241 (-)	NCBI		Celera
Cytogenetic Map	6	p21.1	NCBI
HuRef	6	43,988,550 - 44,003,170 (-)	NCBI		HuRef
CHM1_1	6	44,270,095 - 44,284,719 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	44,132,875 - 44,147,515 (-)	NCBI		T2T-CHM13v2.0

Aars2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	45,817,473 - 45,831,769 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	45,817,767 - 45,831,769 (+)	Ensembl		GRCm39 Ensembl
GRCm38	17	45,503,515 - 45,520,843 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	45,506,841 - 45,520,843 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	45,643,790 - 45,657,792 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	44,970,422 - 44,984,424 (+)	NCBI		MGSCv36	mm8
Celera	17	48,939,666 - 48,953,555 (+)	NCBI		Celera
Cytogenetic Map	17	B3	NCBI
cM Map	17	22.51	NCBI

Aars2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	9,913,867 - 9,924,886 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955437	9,915,371 - 9,924,886 (-)	NCBI	ChiLan1.0	ChiLan1.0

AARS2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	58,803,525 - 58,817,875 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	54,673,732 - 54,687,909 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	43,895,255 - 43,909,347 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	45,176,773 - 45,191,505 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	45,176,773 - 45,191,505 (-)	Ensembl	panpan1.1		panPan2

AARS2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	12,706,043 - 12,718,821 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	12,704,983 - 12,718,821 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	12,734,801 - 12,747,290 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	13,192,494 - 13,205,009 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	13,192,457 - 13,205,003 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	12,717,894 - 12,730,353 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	12,805,352 - 12,817,822 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	12,899,585 - 12,912,057 (-)	NCBI		UU_Cfam_GSD_1.0

Aars2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	48,175,938 - 48,187,979 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936476	15,771,905 - 15,784,373 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936476	15,772,203 - 15,784,316 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

AARS2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	39,301,009 - 39,313,860 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	39,301,020 - 39,314,296 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	45,170,590 - 45,183,842 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

AARS2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	27,855,688 - 27,869,427 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	27,855,713 - 27,870,409 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	44,351,794 - 44,366,483 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Aars2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	15,563,872 - 15,573,536 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624754	15,563,878 - 15,573,538 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Aars2
67 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	193
Count of miRNA genes:	132
Interacting mature miRNAs:	156
Transcripts:	ENSRNOT00000031549
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70226	Eae4	Experimental allergic encephalomyelitis QTL 4			nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	9	1	25661317	Rat
9589055	Scfw5	Subcutaneous fat weight QTL 5	5.55	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	9	1	37999212	Rat
7411592	Foco8	Food consumption QTL 8	7.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	1	37999212	Rat
9589158	Gluco65	Glucose level QTL 65	6.82	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	9	1	37999212	Rat
1300124	Cm4	Cardiac mass QTL 4	3.55		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	9	1	40594091	Rat
1298088	Edpm11	Estrogen-dependent pituitary mass QTL 11	2.5		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	9	1	43718459	Rat
1641911	Alcrsp13	Alcohol response QTL 13			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	1	43718459	Rat
10054125	Srcrt7	Stress Responsive Cort QTL 7	3.33	0.0011	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	9	1	87073594	Rat
1331757	Cdexp1	CD45RC expression in CD8 T cells QTL 1	4.3		CD8-positive T cell quantity (VT:0008077)	blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)	9	1024537	67509080	Rat
1354650	Despr5	Despair related QTL 5	4.01	0.0017	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	9	1254084	46254084	Rat
2303559	Gluco54	Glucose level QTL 54	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	9	1254084	46254084	Rat
61425	Cia15	Collagen induced arthritis QTL 15	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	9	5109826	42921101	Rat
631211	Bw4	Body weight QTL4	5.31		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	9	5109826	50109826	Rat
11353947	Bp392	Blood pressure QTL 392			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	7283252	52283252	Rat
61450	Ciaa3	CIA Autoantibody QTL 3	6.5		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	9	7954720	22071169	Rat
9589133	Insul26	Insulin level QTL 26	17.96	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	9	8952560	53952560	Rat
7411609	Foco16	Food consumption QTL 16	25.6	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	8952560	53952560	Rat
1600365	Mcs20	Mammary carcinoma susceptibility QTL 20	3		mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	9	13533770	42791750	Rat

Markers in Region

AU047834

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	15,489,342 - 15,489,478 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	17,874,005 - 17,874,140	NCBI	Rnor6.0
Rnor_5.0	9	16,762,840 - 16,762,975	UniSTS	Rnor5.0
RGSC_v3.4	9	11,089,668 - 11,089,803	UniSTS	RGSC3.4
Celera	9	13,232,493 - 13,232,632	UniSTS
Cytogenetic Map	9	q12	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		24	13	6	10	6		1	55	21	34	3
Low	3	19	44	35	9	35	8	10	19	14	7	8	8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106891	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244513	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244515	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC096454	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC166719	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473987	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000031549 ⟹ ENSRNOP00000037568

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	15,297,531 - 15,496,090 (-)	Ensembl
Rnor_6.0 Ensembl	9	17,869,124 - 17,880,706 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000094858 ⟹ ENSRNOP00000090578

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	15,297,531 - 15,496,090 (-)	Ensembl

RefSeq Acc Id:

NM_001106891 ⟹ NP_001100361

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	22,982,478 - 22,993,536 (-)	NCBI
mRatBN7.2	9	15,485,043 - 15,496,101 (-)	NCBI
Rnor_6.0	9	17,869,705 - 17,880,763 (-)	NCBI
Rnor_5.0	9	16,755,842 - 16,769,796 (-)	NCBI
RGSC_v3.4	9	11,085,368 - 11,096,426 (-)	RGD
Celera	9	13,228,189 - 13,239,255 (-)	RGD

Sequence:

show sequence

GGAGCTAAAATGGCGGCGTCAGTGGCTGCTGCGGCCGGGAGGCTGCGGCGAGCCATTGGGAGGT
CGTGCCCATGGCAGCGGTTCTCAACCGAGCCCCACCCACCCCACGGAGCGGCCGTGCGGGACGC
CTTCCTGAGCTTCTTCCGAGATCGCCACGGCCACCGGCTCGTGCCCTCCGCTTCCGTGAGGCCG
CGCGGCGACCCCAGCCTGCTTTTCGTCAACGCAGGCATGAACCAGTTCAAGCCCATCTTCCTGG
GCACGGTGGATCCACGAAGCGAGATGGCAGGCTTCCGACGAGTAGCTAACAGCCAGAAATGTGT
CAGGGCTGGAGGACGCCATAACGACCTGGAAGATGTGGGCCGTGATCTCTCTCATCATACTTTT
TTTGAGATGCTTGGCAACTGGGCTTTTGGGGGTGAATATTTTAAGAAAGAAGCATGTAGCATGG
CCTGGGAACTGCTGACTCAAGTCTATGGGATCCCTGAGGACAGGTTATGGGTCTCCTATTTCAG
TGGTGACTCCAAGACAGGGTTGGACCCAGACCTGGAGACCAGAGACATCTGGCTCAGCTTGGGG
GTACCTGCCAGCCGTGTGCTCTCGTTCGGACTGCAAGAGAACTTCTGGGAGATGGGAGACACCG
GACCTTGTGGGCCTTGTACCGAGATCCATTACGATCTGGCTGGTGGAATGGGACCCCCCCAGCT
GGTTGAGCTATGGAATCTGGTCTTCATGCAACACTACAGAGAGGCAGACGGAAGCCTGCATCTG
CTGCCACAGCAACATGTGGACACAGGAATGGGCCTGGAAAGACTGGTGGCTGTACTGCAGGGCA
AGCATTCCACCTACGACACCGACCTCTTTTCTCCACTGCTTGATGCTATACACCAGAGCTGCAG
GGTTCCCCCGTACTCTGGCCGCGTAGGGGCAGCGGATGAGGGACGAATAGACACAGCGTACCGA
GTTGTAGCTGATCACATCCGCACGCTCAGTGTCTGCATTGCTGATGGCGTCTCCCCGGGGATGT
CAGGCGCCCCGCTAGTTCTTCGTCGGATTCTCCGTCGAGCTGTGCGCTATTCCACAGAGGTCTT
GCAGGCACCACCTGGCTTTCTGGGCAACCTGGTACCAGTGGTGGTGGCGACATTGGGAGCTGCT
TACCCAGAACTTCAGAAGAACTCAGTCAAGGTATTGATCTGGGAGATAGCCAACCTGGTGTCAG
AGGATGAGGCAGCCTTCCTGGCCTCCCTGCAGAGAGGCCGTCGGATCATTGATCGCACCGTTAA
GCGCTTGGGCCCTTCTGATTTGTTCCCTGCCGAAGTGGCCTGGTCACTGTCACTGTCTGGGAAT
CTGGGGATCCCCCTGGACCTGGTGCAGCTAATGTTGGAGGAGAAGGGGGTGAAGCTGGACACTG
CGGGCCTGGAGCAGCTAGCCCAGAAGGAAGCCCAGCACCGGGCCCAGCAGGCAGAGGCAGCTCA
GGAGGAGGGATTGTGTCTTGATGTCCACGCACTGGAGGAGCTGCACCGTCAAGGCATACCCACA
ACTGATGACAGCCCCAAATATAACTACTCTCTTCGCCCCAATGGGGATTATGAGTTTGGCCTCT
GTGAGGCCCAGGTATTACAGCTGTATTCAGAGACTGGGACAGCTGTGGCCTCCGTGGGAGAAGG
CCAGCGCTGTGGCCTCCTATTGGACAGAACCAACTTCTATGCTGAACAAGGGGGTCAGGCTTCG
GACCGAGGCTACCTCATTCGTACAGGGCAGCAGGATGTGTTGTTCCCTGTGGCCCGGGCTCAGG
TCTGTGGAGGCTTCATCCTGCATGAGGCCATGGCTCCCGAGTGCTTACAAGTCGGGGACCGAGT
GCAGCTCTATGTGGATAAGGCCTGGCGAATGGGATGCATGGTGAAGCACACAGCCACCCACCTG
CTGAACTGGGCACTTCGGCAGACGCTCGGACCAACCACCGAACAGCGGGGCTCCCATCTCAACC
CGGAGCGGCTGCGCTTTGATGTGGCCACGCAGACCCCACTGACCACAGAGCAGCTACGGACAGT
AGAGAGCTACGTGCAGGAAGCTGTGGGGCAGGATAAGCCTGTATACATGGAGGAAGTGCCCCTG
GCACACACTGCCCGTATCCCCGGCCTTCGCTCACTGGATGAGGTGTACCCAGACCCCGTTCGGG
TCGTGTCAGTGGGGGTTCCTGTGGCCCAGGCACTGGCACCAGCCTCCCAAGCTGCACTGCAGAC
TTCGGTGGAGCTGTGCTGCGGGACGCACCTGCTAAGTACTGGGGCTGTGGGAGACCTGGTGATT
ATTGGGGATCGCCAGCTGGTCAAAGGCATCACTCGCCTACTGGCCATCACCGGGGAGCAGGCCC
AACAGGCCCGAGAGGTGGGCCAGAGCCTGTCGCAGGAGGTGGAAGTGGCAAGCGAACGGCTAAG
TCGGGGCAGCCGGGACCTGCTGGAGGCTCACCGGCTATCTAAGGACATAGGACGTCTCATTGAG
TTCACAGAGTCTGCTGTGATACCTCAGTGGCAGCGGCAGGAGCAGCAGACCACACTGAAGATGC
TACAGCGCCGTGCCAACACCGCCATCCGGAAACTGGAGAAGAGCCAGGCTACGGAGAAATCCCA
GGAGCTGTTGAAACGGCACTCGGAGGGGCCTCTGATTGTGGACACTGTCTCCGCCCAGTCCCTC
TCGGTGCTGGTAAAGGTCGTGCGGCAGCTGTGCAAACAGGCCCCCAGCATGTCCGTGCTGCTGC
TCAGCCCCCAGCCCACTGGCAGTGTCCTGTGTGCCTGCCAGGTGGCCCAGGGTGCCACACCTAC
CTTCACAGCTGAGGCCTGGGCCCTAGCTGTGTGCAGCCACATGGGAGGCAAGGCTTGGGGCTCT
CCAGTGATAGCCCAGGGTACTGGACACACTGCTGACCTGGAGGCTGCCCTCAGGACAGCCCGAG
CTTATGCACTCAACCAGCTCTGACGAGGCCCACCCAGGACACAGAGGAATAGAAGGCAGGCAAG
CATCTGGAGCCACATAATCTTCCCGGAGGCGGGAGCAGAGGACCAGCGGCTGGAGGCCAGGTCT
CCGAGCCAAAGCAGGGCACCAGGGCCACTGAGAGGCGAGCAGGAAGAAGTGTGGATTGAGGGGC
AGCAACCCCAGCAAATGGAAGACCTGGGCTGCTGTGGTTGGGAGCACCCATTCAAAGTGTTTCA
CCGGCTGCAGACTCAGCTCAGTGGTTAAGAGCACTTGTTCCTAGAAGGGACCCAGGTTCGGTTC
CCAGCATCCACATGGAGGTTCCCCACCCCATCAGGCACCAGAAATACATGTGGTACACA

hide sequence

RefSeq Acc Id:

XM_006244513 ⟹ XP_006244575

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	22,981,880 - 22,993,527 (-)	NCBI
mRatBN7.2	9	15,484,639 - 15,496,116 (-)	NCBI
Rnor_6.0	9	17,869,301 - 17,881,762 (-)	NCBI
Rnor_5.0	9	16,755,842 - 16,769,796 (-)	NCBI

Sequence:

show sequence

AACTGATGTCCCAGGTCACAACCCACAGGTTGAGAACCACTGCTCTACTGGGTCTTTAACTTGG
CAAATCCCTTTCTCTCCCCAGATCTGCTAAATTTCCCAGACTAAAGGTCAAGCAAGGTCATCAT
GAGAAGCCCCTAAGCTGTCTAGCTGTACCCACAAGGTCTGCGGGCTTCTTGGTTACTGCTATTA
CCATGGACAGGAAGTCAAGGGGATGGGCCTGCCAGGACAGATATCTCTTTTCTCTCAGCAAAAC
ACAAAACCTCAGGGTACTGGGAGGCTTATGGAAAGCCAACCTCACAGCTTTCAGCCAACAACTT
TGTCCTGACCTGGCGACCTGGATTCTCTCATCCCCAAGCAAATTAAAAGACCAAATGTCATTAA
GCAATTAATAATGGAGCAGATGCAGTCTGGCGTCGGTGTTTCCACCAGACTCCAATTCCAAAGA
ACCTGCGTCAGTCCCTAAGGACAAAGTGGCTCTCTGCAAGCCGAGGGCAGAAGAGGACCTGGCA
AGGTCTTAGAGCAGTGCCTGGCACTTATGCAAGGTTCTGTACTTGTTGACCACCTCTTGAATAC
TCACGATCCCTTGGCACTCTTCAGCCTGGACCAGCGCAAACCACACGCCCACGCACGGAATTGC
ACCCACACCTGTTCATATGCAACCCCCACAAAATCAATAACACAACAACCCTTACTGCCAGAAT
ACAGATTTTGGAGGCAGAGGCATTGTGGTGTTAATCTTGCTACTAACGTTCAAAATAAAGCCTA
CCACATAATGATCTTTTTTTATGATTATCGGTTTAATCCTGGATGAACTAAGGGTCTACTGTGT
GCAAAGTCGTATGCTGAACCGCTAGCCAGGGGTAGTCCCCTTCTTGCGCGACCACTTCCACCAG
AAGCTGAGACTTGCCCCCTAAGTCTTCCACCCGCCAGGGGCCGCTGTAGGAAACCTAGGCGTCC
TTTCGCACGTCACTCTTTGACCCCGCGAAGCCGTTGCCCGGAGCTAAAATGGCGGCGTCAGTGG
CTGCTGCGGCCGGGAGGCTGCGGCGAGCCATTGGGAGGTCGTGCCCATGGCAGCGGTTCTCAAC
CGAGCCCCACCCACCCCACGGAGCGGCCGTGCGGGACGCCTTCCTGAGCTTCTTCCGAGATCGC
CACGGCCACCGGCTCGTGCCCTCCGCTTCCGTGAGGCCGCGCGGCGACCCCAGCCTGCTTTTCG
TCAACGCAGGCATGAACCAGTTCAAGCCCATCTTCCTGGGCACGGTGGATCCACGAAGCGAGAT
GGCAGGCTTCCGACGAGTAGCTAACAGCCAGAAATGTGTCAGGGCTGGAGGACGCCATAACGAC
CTGGAAGATGTGGGCCGTGATCTCTCTCATCATACTTTTTTTGAGATGCTTGGCAACTGGGCTT
TTGGGGGTGAATATTTTAAGAAAGAAGCATGTAGCATGGCCTGGGAACTGCTGACTCAAGTCTA
TGGGATCCCTGAGGACAGGTTATGGGTCTCCTATTTCAGTGGTGACTCCAAGACAGGGTTGGAC
CCAGACCTGGAGACCAGAGACATCTGGCTCAGCTTGGGGGTACCTGCCAGCCGTGTGCTCTCGT
TCGGACTGCAAGAGAACTTCTGGGAGATGGGAGACACCGGACCTTGTGGGCCTTGTACCGAGAT
CCATTACGATCTGGCTGGTGGAATGGGACCCCCCCAGCTGGTTGAGCTATGGAATCTGGTCTTC
ATGCAACACTACAGAGAGGCAGACGGAAGCCTGCATCTGCTGCCACAGCAACATGTGGACACAG
GAATGGGCCTGGAAAGACTGGTGGCTGTACTGCAGGGCAAGCATTCCACCTACGACACCGACCT
CTTTTCTCCACTGCTTGATGCTATACACCAGAGCTGCAGGGTTCCCCCGTACTCTGGCCGCGTA
GGGGCAGCGGATGAGGGACGAATAGACACAGCGTACCGAGTTGTAGCTGATCACATCCGCACGC
TCAGTGTCTGCATTGCTGATGGCGTCTCCCCGGGGATGTCAGGCGCCCCGCTAGTTCTTCGTCG
GATTCTCCGTCGAGCTGTGCGCTATTCCACAGAGGTCTTGCAGGCACCACCTGGCTTTCTGGGC
AACCTGGTACCAGTGGTGGTGGCGACATTGGGAGCTGCTTACCCAGAACTTCAGAAGAACTCAG
TCAAGATAGCCAACCTGGTGTCAGAGGATGAGGCAGCCTTCCTGGCCTCCCTGCAGAGAGGCCG
TCGGATCATTGATCGCACCGTTAAGCGCTTGGGCCCTTCTGATTTGTTCCCTGCCGAAGTGGCC
TGGTCACTGTCACTGTCTGGGAATCTGGGGATCCCCCTGGACCTGGTGCAGCTAATGTTGGAGG
AGAAGGGGGTGAAGCTGGACACTGCGGGCCTGGAGCAGCTAGCCCAGAAGGAAGCCCAGCACCG
GGCCCAGCAGGCAGAGGCAGCTCAGGAGGAGGGATTGTGTCTTGATGTCCACGCACTGGAGGAG
CTGCACCGTCAAGGCATACCCACAACTGATGACAGCCCCAAATATAACTACTCTCTTCGCCCCA
ATGGGGATTATGAGTTTGGCCTCTGTGAGGCCCAGGTATTACAGCTGTATTCAGAGACTGGGAC
AGCTGTGGCCTCCGTGGGAGAAGGCCAGCGCTGTGGCCTCCTATTGGACAGAACCAACTTCTAT
GCTGAACAAGGGGGTCAGGCTTCGGACCGAGGCTACCTCATTCGTACAGGGCAGCAGGATGTGT
TGTTCCCTGTGGCCCGGGCTCAGGTCTGTGGAGGCTTCATCCTGCATGAGGCCATGGCTCCCGA
GTGCTTACAAGTCGGGGACCGAGTGCAGCTCTATGTGGATAAGGCCTGGCGAATGGGATGCATG
GTGAAGCACACAGCCACCCACCTGCTGAACTGGGCACTTCGGCAGACGCTCGGACCAACCACCG
AACAGCGGGGCTCCCATCTCAACCCGGAGCGGCTGCGCTTTGATGTGGCCACGCAGACCCCACT
GACCACAGAGCAGCTACGGACAGTAGAGAGCTACGTGCAGGAAGCTGTGGGGCAGGATAAGCCT
GTATACATGGAGGAAGTGCCCCTGGCACACACTGCCCGTATCCCCGGCCTTCGCTCACTGGATG
AGGTGTACCCAGACCCCGTTCGGGTCGTGTCAGTGGGGGTTCCTGTGGCCCAGGCACTGGCACC
AGCCTCCCAAGCTGCACTGCAGACTTCGGTGGAGCTGTGCTGCGGGACGCACCTGCTAAGTACT
GGGGCTGTGGGAGACCTGGTGATTATTGGGGATCGCCAGCTGGTCAAAGGCATCACTCGCCTAC
TGGCCATCACCGGGGAGCAGGCCCAACAGGCCCGAGAGGTGGGCCAGAGCCTGTCGCAGGAGGT
GGAAGTGGCAAGCGAACGGCTAAGTCGGGGCAGCCGGGACCTGCTGGAGGCTCACCGGCTATCT
AAGGACATAGGACGTCTCATTGAGTTCACAGAGTCTGCTGTGATACCTCAGTGGCAGCGGCAGG
AGCAGCAGACCACACTGAAGATGCTACAGCGCCGTGCCAACACCGCCATCCGGAAACTGGAGAA
GAGCCAGCAACCTAGAGGGCCCTGTGACAGAATAGAAGAGCCAAGGCAGTCACAGAAGGCCACA
GATGCAACCCAAGAAAGCAGCCGCACCAGGCAGAGCCCCGCCCACCACCTCTCCTCAGAACTGA
TGGCCTTTATGGAGAGAGCGAGCATGGGAGGGCGGGGGCTGTCAGGCTGGGTCTCAGTTCAGAA
GTGGAATATCCAACTCCGGCCCCTCTGCTGCTCCTCGGCCCCACAGGCTACGGAGAAATCCCAG
GAGCTGTTGAAACGGCACTCGGAGGGGCCTCTGATTGTGGACACTGTCTCCGCCCAGTCCCTCT
CGGTGCTGGTAAAGGTCGTGCGGCAGCTGTGCAAACAGGCCCCCAGCATGTCCGTGCTGCTGCT
CAGCCCCCAGCCCACTGGCAGTGTCCTGTGTGCCTGCCAGGTGGCCCAGGGTGCCACACCTACC
TTCACAGCTGAGGCCTGGGCCCTAGCTGTGTGCAGCCACATGGGAGGCAAGGCTTGGGGCTCTC
CAGTGATAGCCCAGGGTACTGGACACACTGCTGACCTGGAGGCTGCCCTCAGGACAGCCCGAGC
TTATGCACTCAACCAGCTCTGACGAGGCCCACCCAGGACACAGAGGAATAGAAGGCAGGCAAGC
ATCTGGAGCCACATAATCTTCCCGGAGGCGGGAGCAGAGGACCAGCGGCTGGAGGCCAGGTCTC
CGAGCCAAAGCAGGGCACCAGGGCCACTGAGAGGCGAGCAGGAAGAAGTGTGGATTGAGGGGCA
GCAACCCCAGCAAATGGAAGACCTGGGCTGCTGTGGTTGGGAGCACCCATTCAAAGTGTTTCAC
CGGCTGCAGACTCAGCTCAGTGGTTAAGAGCACTTGTTCCTAGAAGGGACCCAGGTTCGGTTCC
CAGCATCCACATGGAGGTTCCCCACCCCATCAGGCACCAGAAATACATGTGGTACACAGACATA
CATGTAGGCACTCGTGTATACAGACACTCATACATGCAAAGTAATAAAACAATTTTTTTTTCTT
TTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAAGCAAGCGCTCTACCGCGGAG
CTAAATCCCCAACCCCATAAAACAATTTTTTTAAAAAAGTGTTTCACAGAGCATTAGAAGTCCT
AGAAAAGTCTGTCTGTGGGAAAAAGAGTGGCCTGCCCGTCTGTGCTTCCGGAGGCCCAAGGTGA
GCTCCCAGCAGCCATATATGGCTCACAGTCGCTTTTAACTCCACCAGCAGCAAGCCTGTTGCCT
TTTTCTGGATTCTGTGGCCTTTGCAAATATGTGACATAAAAAAAAAAAAAAAAAGAAAGAAAGA
AAGAAAGAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006244515 ⟹ XP_006244577

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	22,981,880 - 22,993,527 (-)	NCBI
mRatBN7.2	9	15,484,639 - 15,496,092 (-)	NCBI
Rnor_6.0	9	17,869,301 - 17,881,758 (-)	NCBI
Rnor_5.0	9	16,755,842 - 16,769,796 (-)	NCBI

Sequence:

show sequence

GATGTCCCAGGTCACAACCCACAGGTTGAGAACCACTGCTCTACTGGGTCTTTAACTTGGCAAA
TCCCTTTCTCTCCCCAGATCTGCTAAATTTCCCAGACTAAAGGTCAAGCAAGGTCATCATGAGA
AGCCCCTAAGCTGTCTAGCTGTACCCACAAGGTCTGCGGGCTTCTTGGTTACTGCTATTACCAT
GGACAGGAAGTCAAGGGGATGGGCCTGCCAGGACAGATATCTCTTTTCTCTCAGCAAAACACAA
AACCTCAGGGTACTGGGAGGCTTATGGAAAGCCAACCTCACAGCTTTCAGCCAACAACTTTGTC
CTGACCTGGCGACCTGGATTCTCTCATCCCCAAGCAAATTAAAAGACCAAATGTCATTAAGCAA
TTAATAATGGAGCAGATGCAGTCTGGCGTCGGTGTTTCCACCAGACTCCAATTCCAAAGAACCT
GCGTCAGTCCCTAAGGACAAAGTGGCTCTCTGCAAGCCGAGGGCAGAAGAGGACCTGGCAAGGT
CTTAGAGCAGTGCCTGGCACTTATGCAAGGTTCTGTACTTGTTGACCACCTCTTGAATACTCAC
GATCCCTTGGCACTCTTCAGCCTGGACCAGCGCAAACCACACGCCCACGCACGGAATTGCACCC
ACACCTGTTCATATGCAACCCCCACAAAATCAATAACACAACAACCCTTACTGCCAGAATACAG
ATTTTGGAGGCAGAGGCATTGTGGTGTTAATCTTGCTACTAACGTTCAAAATAAAGCCTACCAC
ATAATGATCTTTTTTTATGATTATCGGTTTAATCCTGGATGAACTAAGGGTCTACTGTGTGCAA
AGTCGTATGCTGAACCGCTAGCCAGGGGTAGTCCCCTTCTTGCGCGACCACTTCCACCAGAAGC
TGAGACTTGCCCCCTAAGTCTTCCACCCGCCAGGGGCCGCTGTAGGAAACCTAGGCGTCCTTTC
GCACGTCACTCTTTGACCCCGCGAAGCCGTTGCCCGGAGCTAAAATGGCGGCGTCAGTGGCTGC
TGCGGCCGGGAGGCTGCGGCGAGCCATTGGGAGGTCGTGCCCATGGCAGCGGTTCTCAACCGAG
CCCCACCCACCCCACGGAGCGGCCGTGCGGGACGCCTTCCTGAGCTTCTTCCGAGATCGCCACG
GCCACCGGCTCGTGCCCTCCGCTTCCGTGAGGCCGCGCGGCGACCCCAGCCTGCTTTTCGTCAA
CGCAGGCATGAACCAGTTCAAGCCCATCTTCCTGGGCACGGTGGATCCACGAAGCGAGATGGCA
GGCTTCCGACGAGTAGCTAACAGCCAGAAATGTGTCAGGGCTGGAGGACGCCATAACGACCTGG
AAGATGTGGGCCGTGATCTCTCTCATCATACTTTTTTTGAGATGCTTGGCAACTGGGCTTTTGG
GGGTGAATATTTTAAGAAAGAAGCATGTAGCATGGCCTGGGAACTGCTGACTCAAGTCTATGGG
ATCCCTGAGGACAGGTTATGGGTCTCCTATTTCAGTGGTGACTCCAAGACAGGGTTGGACCCAG
ACCTGGAGACCAGAGACATCTGGCTCAGCTTGGGGGTACCTGCCAGCCGTGTGCTCTCGTTCGG
ACTGCAAGAGAACTTCTGGGAGATGGGAGACACCGGACCTTGTGGGCCTTGTACCGAGATCCAT
TACGATCTGGCTGGTGGAATGGGACCCCCCCAGCTGGTTGAGCTATGGAATCTGGTCTTCATGC
AACACTACAGAGAGGCAGACGGAAGCCTGCATCTGCTGCCACAGCAACATGTGGACACAGGAAT
GGGCCTGGAAAGACTGGTGGCTGTACTGCAGGGCAAGCATTCCACCTACGACACCGACCTCTTT
TCTCCACTGCTTGATGCTATACACCAGAGCTGCAGGGTTCCCCCGTACTCTGGCCGCGTAGGGG
CAGCGGATGAGGGACGAATAGACACAGCGTACCGAGTTGTAGCTGATCACATCCGCACGCTCAG
TGTCTGCATTGCTGATGGCGTCTCCCCGGGGATGTCAGGCGCCCCGCTAGTTCTTCGTCGGATT
CTCCGTCGAGCTGTGCGCTATTCCACAGAGGTCTTGCAGGCACCACCTGGCTTTCTGGGCAACC
TGGTACCAGTGGTGGTGGCGACATTGGGAGCTGCTTACCCAGAACTTCAGAAGAACTCAGTCAA
GATAGCCAACCTGGTGTCAGAGGATGAGGCAGCCTTCCTGGCCTCCCTGCAGAGAGGCCGTCGG
ATCATTGATCGCACCGTTAAGCGCTTGGGCCCTTCTGATTTGTTCCCTGCCGAAGTGGCCTGGT
CACTGTCACTGTCTGGGAATCTGGGGATCCCCCTGGACCTGGTGCAGCTAATGTTGGAGGAGAA
GGGGGTGAAGCTGGACACTGCGGGCCTGGAGCAGCTAGCCCAGAAGGAAGCCCAGCACCGGGCC
CAGCAGGCAGAGGCAGCTCAGGAGGAGGGATTGTGTCTTGATGTCCACGCACTGGAGGAGCTGC
ACCGTCAAGGCATACCCACAACTGATGACAGCCCCAAATATAACTACTCTCTTCGCCCCAATGG
GGATTATGAGTTTGGCCTCTGTGAGGCCCAGGTATTACAGCTGTATTCAGAGACTGGGACAGCT
GTGGCCTCCGTGGGAGAAGGCCAGCGCTGTGGCCTCCTATTGGACAGAACCAACTTCTATGCTG
AACAAGGGGGTCAGGCTTCGGACCGAGGCTACCTCATTCGTACAGGGCAGCAGGATGTGTTGTT
CCCTGTGGCCCGGGCTCAGGTCTGTGGAGGCTTCATCCTGCATGAGGCCATGGCTCCCGAGTGC
TTACAAGTCGGGGACCGAGTGCAGCTCTATGTGGATAAGGCCTGGCGAATGGGATGCATGGTGA
AGCACACAGCCACCCACCTGCTGAACTGGGCACTTCGGCAGACGCTCGGACCAACCACCGAACA
GCGGGGCTCCCATCTCAACCCGGAGCGGCTGCGCTTTGATGTGGCCACGCAGACCCCACTGACC
ACAGAGCAGCTACGGACAGTAGAGAGCTACGTGCAGGAAGCTGTGGGGCAGGATAAGCCTGTAT
ACATGGAGGAAGTGCCCCTGGCACACACTGCCCGTATCCCCGGCCTTCGCTCACTGGATGAGGT
GTACCCAGACCCCGTTCGGGTCGTGTCAGTGGGGGTTCCTGTGGCCCAGGCACTGGCACCAGCC
TCCCAAGCTGCACTGCAGACTTCGGTGGAGCTGTGCTGCGGGACGCACCTGCTAAGTACTGGGG
CTGTGGGAGACCTGGTGATTATTGGGGATCGCCAGCTGGTCAAAGGCATCACTCGCCTACTGGC
CATCACCGGGGAGCAGGCCCAACAGGCCCGAGAGGTGGGCCAGAGCCTGTCGCAGGAGGTGGAA
GTGGCAAGCGAACGGCTAAGTCGGGGCAGCCGGGACCTGCTGGAGGCTCACCGGCTATCTAAGG
ACATAGGACGTCTCATTGAGTTCACAGAGTCTGCTGTGATACCTCAGTGGCAGCGGCAGGAGCA
GCAGACCACACTGAAGATGCTACAGCGCCGTGCCAACACCGCCATCCGGAAACTGGAGAAGAGC
CAGGCTACGGAGAAATCCCAGGAGCTGTTGAAACGGCACTCGGAGGGGCCTCTGATTGTGGACA
CTGTCTCCGCCCAGTCCCTCTCGGTGCTGGTAAAGGTCGTGCGGCAGCTGTGCAAACAGGCCCC
CAGCATGTCCGTGCTGCTGCTCAGCCCCCAGCCCACTGGCAGTGTCCTGTGTGCCTGCCAGGTG
GCCCAGGGTGCCACACCTACCTTCACAGCTGAGGCCTGGGCCCTAGCTGTGTGCAGCCACATGG
GAGGCAAGGCTTGGGGCTCTCCAGTGATAGCCCAGGGTACTGGACACACTGCTGACCTGGAGGC
TGCCCTCAGGACAGCCCGAGCTTATGCACTCAACCAGCTCTGACGAGGCCCACCCAGGACACAG
AGGAATAGAAGGCAGGCAAGCATCTGGAGCCACATAATCTTCCCGGAGGCGGGAGCAGAGGACC
AGCGGCTGGAGGCCAGGTCTCCGAGCCAAAGCAGGGCACCAGGGCCACTGAGAGGCGAGCAGGA
AGAAGTGTGGATTGAGGGGCAGCAACCCCAGCAAATGGAAGACCTGGGCTGCTGTGGTTGGGAG
CACCCATTCAAAGTGTTTCACCGGCTGCAGACTCAGCTCAGTGGTTAAGAGCACTTGTTCCTAG
AAGGGACCCAGGTTCGGTTCCCAGCATCCACATGGAGGTTCCCCACCCCATCAGGCACCAGAAA
TACATGTGGTACACAGACATACATGTAGGCACTCGTGTATACAGACACTCATACATGCAAAGTA
ATAAAACAATTTTTTTTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTA
AGCAAGCGCTCTACCGCGGAGCTAAATCCCCAACCCCATAAAACAATTTTTTTAAAAAAGTGTT
TCACAGAGCATTAGAAGTCCTAGAAAAGTCTGTCTGTGGGAAAAAGAGTGGCCTGCCCGTCTGT
GCTTCCGGAGGCCCAAGGTGAGCTCCCAGCAGCCATATATGGCTCACAGTCGCTTTTAACTCCA
CCAGCAGCAAGCCTGTTGCCTTTTTCTGGATTCTGTGGCCTTTGCAAATATGTGACATAAAAAA
AAAAAAAAAAAGAAAGAAAGAAAGAAAGAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001100361	(Get FASTA)	NCBI Sequence Viewer
	XP_006244575	(Get FASTA)	NCBI Sequence Viewer
	XP_006244577	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI66719	(Get FASTA)	NCBI Sequence Viewer
	D3ZX08	(Get FASTA)	NCBI Sequence Viewer
	EDM18733	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000037568
	ENSRNOP00000037568.5
	ENSRNOP00000090578.1

RefSeq Acc Id:

NP_001100361 ⟸ NM_001106891

- UniProtKB:

D3ZX08 (UniProtKB/Swiss-Prot), A0A0H2UHV7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAASVAAAAGRLRRAIGRSCPWQRFSTEPHPPHGAAVRDAFLSFFRDRHGHRLVPSASVRPRGD
PSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANSQKCVRAGGRHNDLEDVGRDLSHHTFFEM
LGNWAFGGEYFKKEACSMAWELLTQVYGIPEDRLWVSYFSGDSKTGLDPDLETRDIWLSLGVPA
SRVLSFGLQENFWEMGDTGPCGPCTEIHYDLAGGMGPPQLVELWNLVFMQHYREADGSLHLLPQ
QHVDTGMGLERLVAVLQGKHSTYDTDLFSPLLDAIHQSCRVPPYSGRVGAADEGRIDTAYRVVA
DHIRTLSVCIADGVSPGMSGAPLVLRRILRRAVRYSTEVLQAPPGFLGNLVPVVVATLGAAYPE
LQKNSVKVLIWEIANLVSEDEAAFLASLQRGRRIIDRTVKRLGPSDLFPAEVAWSLSLSGNLGI
PLDLVQLMLEEKGVKLDTAGLEQLAQKEAQHRAQQAEAAQEEGLCLDVHALEELHRQGIPTTDD
SPKYNYSLRPNGDYEFGLCEAQVLQLYSETGTAVASVGEGQRCGLLLDRTNFYAEQGGQASDRG
YLIRTGQQDVLFPVARAQVCGGFILHEAMAPECLQVGDRVQLYVDKAWRMGCMVKHTATHLLNW
ALRQTLGPTTEQRGSHLNPERLRFDVATQTPLTTEQLRTVESYVQEAVGQDKPVYMEEVPLAHT
ARIPGLRSLDEVYPDPVRVVSVGVPVAQALAPASQAALQTSVELCCGTHLLSTGAVGDLVIIGD
RQLVKGITRLLAITGEQAQQAREVGQSLSQEVEVASERLSRGSRDLLEAHRLSKDIGRLIEFTE
SAVIPQWQRQEQQTTLKMLQRRANTAIRKLEKSQATEKSQELLKRHSEGPLIVDTVSAQSLSVL
VKVVRQLCKQAPSMSVLLLSPQPTGSVLCACQVAQGATPTFTAEAWALAVCSHMGGKAWGSPVI
AQGTGHTADLEAALRTARAYALNQL

hide sequence

RefSeq Acc Id:	XP_006244575 ⟸ XM_006244513
- Peptide Label:	isoform X1
- UniProtKB:	A0A0H2UHV7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAASVAAAAGRLRRAIGRSCPWQRFSTEPHPPHGAAVRDAFLSFFRDRHGHRLVPSASVRPRGD PSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANSQKCVRAGGRHNDLEDVGRDLSHHTFFEM LGNWAFGGEYFKKEACSMAWELLTQVYGIPEDRLWVSYFSGDSKTGLDPDLETRDIWLSLGVPA SRVLSFGLQENFWEMGDTGPCGPCTEIHYDLAGGMGPPQLVELWNLVFMQHYREADGSLHLLPQ QHVDTGMGLERLVAVLQGKHSTYDTDLFSPLLDAIHQSCRVPPYSGRVGAADEGRIDTAYRVVA DHIRTLSVCIADGVSPGMSGAPLVLRRILRRAVRYSTEVLQAPPGFLGNLVPVVVATLGAAYPE LQKNSVKIANLVSEDEAAFLASLQRGRRIIDRTVKRLGPSDLFPAEVAWSLSLSGNLGIPLDLV QLMLEEKGVKLDTAGLEQLAQKEAQHRAQQAEAAQEEGLCLDVHALEELHRQGIPTTDDSPKYN YSLRPNGDYEFGLCEAQVLQLYSETGTAVASVGEGQRCGLLLDRTNFYAEQGGQASDRGYLIRT GQQDVLFPVARAQVCGGFILHEAMAPECLQVGDRVQLYVDKAWRMGCMVKHTATHLLNWALRQT LGPTTEQRGSHLNPERLRFDVATQTPLTTEQLRTVESYVQEAVGQDKPVYMEEVPLAHTARIPG LRSLDEVYPDPVRVVSVGVPVAQALAPASQAALQTSVELCCGTHLLSTGAVGDLVIIGDRQLVK GITRLLAITGEQAQQAREVGQSLSQEVEVASERLSRGSRDLLEAHRLSKDIGRLIEFTESAVIP QWQRQEQQTTLKMLQRRANTAIRKLEKSQQPRGPCDRIEEPRQSQKATDATQESSRTRQSPAHH LSSELMAFMERASMGGRGLSGWVSVQKWNIQLRPLCCSSAPQATEKSQELLKRHSEGPLIVDTV SAQSLSVLVKVVRQLCKQAPSMSVLLLSPQPTGSVLCACQVAQGATPTFTAEAWALAVCSHMGG KAWGSPVIAQGTGHTADLEAALRTARAYALNQL hide sequence

RefSeq Acc Id:	XP_006244577 ⟸ XM_006244515
- Peptide Label:	isoform X2
- UniProtKB:	A0A0H2UHV7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAASVAAAAGRLRRAIGRSCPWQRFSTEPHPPHGAAVRDAFLSFFRDRHGHRLVPSASVRPRGD PSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANSQKCVRAGGRHNDLEDVGRDLSHHTFFEM LGNWAFGGEYFKKEACSMAWELLTQVYGIPEDRLWVSYFSGDSKTGLDPDLETRDIWLSLGVPA SRVLSFGLQENFWEMGDTGPCGPCTEIHYDLAGGMGPPQLVELWNLVFMQHYREADGSLHLLPQ QHVDTGMGLERLVAVLQGKHSTYDTDLFSPLLDAIHQSCRVPPYSGRVGAADEGRIDTAYRVVA DHIRTLSVCIADGVSPGMSGAPLVLRRILRRAVRYSTEVLQAPPGFLGNLVPVVVATLGAAYPE LQKNSVKIANLVSEDEAAFLASLQRGRRIIDRTVKRLGPSDLFPAEVAWSLSLSGNLGIPLDLV QLMLEEKGVKLDTAGLEQLAQKEAQHRAQQAEAAQEEGLCLDVHALEELHRQGIPTTDDSPKYN YSLRPNGDYEFGLCEAQVLQLYSETGTAVASVGEGQRCGLLLDRTNFYAEQGGQASDRGYLIRT GQQDVLFPVARAQVCGGFILHEAMAPECLQVGDRVQLYVDKAWRMGCMVKHTATHLLNWALRQT LGPTTEQRGSHLNPERLRFDVATQTPLTTEQLRTVESYVQEAVGQDKPVYMEEVPLAHTARIPG LRSLDEVYPDPVRVVSVGVPVAQALAPASQAALQTSVELCCGTHLLSTGAVGDLVIIGDRQLVK GITRLLAITGEQAQQAREVGQSLSQEVEVASERLSRGSRDLLEAHRLSKDIGRLIEFTESAVIP QWQRQEQQTTLKMLQRRANTAIRKLEKSQATEKSQELLKRHSEGPLIVDTVSAQSLSVLVKVVR QLCKQAPSMSVLLLSPQPTGSVLCACQVAQGATPTFTAEAWALAVCSHMGGKAWGSPVIAQGTG HTADLEAALRTARAYALNQL hide sequence

RefSeq Acc Id:

ENSRNOP00000037568 ⟸ ENSRNOT00000031549

RefSeq Acc Id:

ENSRNOP00000090578 ⟸ ENSRNOT00000094858

Protein Domains

Alanyl-transfer RNA synthetases family profile

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZX08-F1-model_v2	AlphaFold	D3ZX08	1-985	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696547

Promoter ID:

EPDNEW_R7070

Type:

multiple initiation site

Name:

Aars2_1

Description:

alanyl-tRNA synthetase 2, mitochondrial

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	17,880,767 - 17,880,827	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310617	AgrOrtholog
BioCyc Gene	G2FUF-28170	BioCyc
BioCyc Pathway	TRNA-CHARGING-PWY [tRNA charging]	BioCyc
BioCyc Pathway Image	TRNA-CHARGING-PWY	BioCyc
Ensembl Genes	ENSRNOG00000025808	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000031549.5	UniProtKB/TrEMBL
	ENSRNOT00000094858.1	UniProtKB/TrEMBL
Gene3D-CATH	2.40.30.130	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	3.10.310.40	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7932249	IMAGE-MGC_LOAD
InterPro	aa-tRNA-synth_II/BPL/LPL	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ala-tRNA-lgiase_IIc	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ala-tRNA-ligase_IIc_anticod-bd	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ala-tRNA-synth_IIc_core	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ala-tRNA-synth_IIc_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ala_tRNA_ligase_euk/bac	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Thr/Ala-tRNA-synth_IIc_edit	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Transl_B-barrel_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	tRNA_SAD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:301254	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:188431	IMAGE-MGC_LOAD
NCBI Gene	301254	ENTREZGENE
PANTHER	ALANINE--TRNA LIGASE, MITOCHONDRIAL	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ALANYL-TRNA SYNTHETASE	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	tRNA-synt_2c	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	tRNA_SAD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Aars2	PhenoGen
PRINTS	TRNASYNTHALA	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	AA_TRNA_LIGASE_II_ALA	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000025808	RatGTEx
SMART	tRNA_SAD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF101353	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF50447	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF55186	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF55681	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0H2UHV7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AE30_RAT	UniProtKB/TrEMBL
	B2RYB6_RAT	UniProtKB/TrEMBL
	D3ZX08	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-11-07	Aars2	alanyl-tRNA synthetase 2, mitochondrial	Aars2	alanyl-tRNA synthetase 2, mitochondrial (putative)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-10	Aars2	alanyl-tRNA synthetase 2, mitochondrial (putative)	Aars2	alanyl-tRNA synthetase 2, mitochondrial	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-02-26	Aars2	alanyl-tRNA synthetase 2, mitochondrial	Aarsl_predicted	alanyl-tRNA synthetase like (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-12	Aarsl_predicted	alanyl-tRNA synthetase like (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)

BioCyc Pathways

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)

BioCyc Pathways