Ypel5 (yippee-like 5) - Rat Genome Database

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Gene: Ypel5 (yippee-like 5) Rattus norvegicus
Analyze
Symbol: Ypel5
Name: yippee-like 5
RGD ID: 1309657
Description: Predicted to be part of ubiquitin ligase complex. Orthologous to human YPEL5 (yippee like 5); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC102553396; LOC298792; uncharacterized LOC102553396; yippee-like 5 (Drosophila)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8628,408,079 - 28,423,536 (-)NCBIGRCr8
mRatBN7.2622,656,284 - 22,671,741 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl622,656,285 - 22,671,691 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx622,987,739 - 23,003,146 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0623,303,574 - 23,318,981 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0622,786,551 - 22,801,960 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0624,069,351 - 24,084,758 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl624,064,738 - 24,084,757 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0633,919,768 - 33,935,181 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4622,758,416 - 22,773,823 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1622,761,365 - 22,770,801 (-)NCBI
Celera622,192,616 - 22,208,062 (-)NCBICelera
Cytogenetic Map6q14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(-)-demecolcine  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
acrylamide  (EXP,ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amitrole  (EXP)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bortezomib  (ISO)
buspirone  (EXP)
cantharidin  (ISO)
chloropicrin  (ISO)
chrysene  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (ISO)
cobalt dichloride  (EXP,ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dicrotophos  (ISO)
diethyl maleate  (ISO)
endosulfan  (EXP)
Enterolactone  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
flutamide  (EXP)
formaldehyde  (ISO)
fulvestrant  (ISO)
genistein  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
hydrogen peroxide  (ISO)
indometacin  (ISO)
ketamine  (EXP)
methimazole  (EXP)
methyl methanesulfonate  (ISO)
N(4)-hydroxycytidine  (ISO)
nefazodone  (EXP)
niclosamide  (ISO)
nimesulide  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
PCB138  (EXP)
pentachlorophenol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phorone  (EXP)
pirinixic acid  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
temozolomide  (ISO)
tetrachloromethane  (EXP,ISO)
tetraphene  (ISO)
thioacetamide  (EXP)
trovafloxacin  (EXP)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vincristine  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:29911972  


Genomics

Comparative Map Data
Ypel5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8628,408,079 - 28,423,536 (-)NCBIGRCr8
mRatBN7.2622,656,284 - 22,671,741 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl622,656,285 - 22,671,691 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx622,987,739 - 23,003,146 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0623,303,574 - 23,318,981 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0622,786,551 - 22,801,960 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0624,069,351 - 24,084,758 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl624,064,738 - 24,084,757 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0633,919,768 - 33,935,181 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4622,758,416 - 22,773,823 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1622,761,365 - 22,770,801 (-)NCBI
Celera622,192,616 - 22,208,062 (-)NCBICelera
Cytogenetic Map6q14NCBI
YPEL5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38230,147,007 - 30,160,533 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl230,146,941 - 30,160,533 (+)EnsemblGRCh38hg38GRCh38
GRCh37230,369,873 - 30,383,399 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36230,223,332 - 30,236,903 (+)NCBINCBI36Build 36hg18NCBI36
Build 34230,281,478 - 30,295,050NCBI
Celera230,212,614 - 30,226,263 (+)NCBICelera
Cytogenetic Map2p23.1NCBI
HuRef230,108,290 - 30,121,799 (+)NCBIHuRef
CHM1_1230,299,990 - 30,313,638 (+)NCBICHM1_1
T2T-CHM13v2.0230,191,259 - 30,204,786 (+)NCBIT2T-CHM13v2.0
Ypel5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391773,143,623 - 73,157,439 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1773,143,448 - 73,158,190 (+)EnsemblGRCm39 Ensembl
GRCm381772,836,628 - 72,850,444 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1772,836,453 - 72,851,195 (+)EnsemblGRCm38mm10GRCm38
MGSCv371773,186,044 - 73,200,535 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361772,741,704 - 72,756,195 (+)NCBIMGSCv36mm8
Celera1777,119,613 - 77,134,035 (+)NCBICelera
Cytogenetic Map17E1.3NCBI
cM Map1744.7NCBI
Ypel5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546911,956,047 - 11,967,360 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546911,955,257 - 11,967,360 (+)NCBIChiLan1.0ChiLan1.0
YPEL5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21296,340,670 - 96,357,111 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A96,344,644 - 96,358,442 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A30,159,573 - 30,173,181 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A30,235,158 - 30,248,880 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A30,235,616 - 30,248,880 (+)Ensemblpanpan1.1panPan2
YPEL5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11723,864,190 - 23,878,510 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1723,655,822 - 23,671,299 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01724,424,349 - 24,439,838 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1724,424,395 - 24,439,837 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11723,730,096 - 23,745,578 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01723,793,160 - 23,808,595 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01723,892,572 - 23,908,036 (+)NCBIUU_Cfam_GSD_1.0
Ypel5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629267,993,978 - 68,007,460 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364932,832,105 - 2,845,551 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
YPEL5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3109,178,095 - 109,195,586 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13109,178,093 - 109,196,643 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23115,863,173 - 115,881,849 (-)NCBISscrofa10.2Sscrofa10.2susScr3
YPEL5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11477,387,604 - 77,400,935 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1477,389,254 - 77,400,955 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604534,692,466 - 34,705,773 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ypel5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473812,009,537 - 12,027,480 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473812,009,464 - 12,025,001 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ypel5
52 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:196
Count of miRNA genes:134
Interacting mature miRNAs:164
Transcripts:ENSRNOT00000035362
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738023Alc17Alcohol consumption QTL 173.10.003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)6127574569Rat
1354616Despr12Despair related QTL 120.0012locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)6127574569Rat
1549905Stresp10Stress response QTL 106.830.0066stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)6127574569Rat
2300176Bmd51Bone mineral density QTL 5111.70.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)6127574569Rat
2300190Bmd52Bone mineral density QTL 5211.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)6127574569Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)6134235784Rat
1578758Tcas9Tongue tumor susceptibility QTL 93.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)6137618905Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6139036266Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6141223769Rat
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6141223769Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6141223769Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6141223769Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6141223769Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6142487980Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6142487980Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6142487980Rat
7411584Foco4Food consumption QTL 44.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6142838846Rat
738024Sach5Saccharine consumption QTL 53.90.00039consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)6143394190Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449734434305Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
1359023Bp272Blood pressure QTL 2722.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)61653614027261739Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)61653614071636405Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62033877762613667Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat

Markers in Region
D6Rat77  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2622,664,345 - 22,664,497 (-)MAPPERmRatBN7.2
Rnor_6.0624,076,545 - 24,076,696NCBIRnor6.0
Rnor_5.0633,926,962 - 33,927,113UniSTSRnor5.0
RGSC_v3.4622,766,477 - 22,766,629RGDRGSC3.4
RGSC_v3.4622,766,478 - 22,766,629UniSTSRGSC3.4
RGSC_v3.1622,769,430 - 22,769,582RGD
Celera622,200,678 - 22,200,829UniSTS
FHH x ACI Map620.5099RGD
FHH x ACI Map620.5099UniSTS
Cytogenetic Map6q13UniSTS
RH127344  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2622,656,366 - 22,656,580 (-)MAPPERmRatBN7.2
Rnor_6.0624,084,462 - 24,084,675NCBIRnor6.0
Rnor_5.0633,934,879 - 33,935,092UniSTSRnor5.0
RGSC_v3.4622,758,499 - 22,758,712UniSTSRGSC3.4
Celera622,192,699 - 22,192,912UniSTS
Cytogenetic Map6q13UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001035221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC105836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB584328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000035362   ⟹   ENSRNOP00000038910
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl622,656,285 - 22,671,691 (-)Ensembl
Rnor_6.0 Ensembl624,064,738 - 24,084,757 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000101401   ⟹   ENSRNOP00000092955
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl622,657,218 - 22,670,825 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000103854   ⟹   ENSRNOP00000083729
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl622,657,218 - 22,670,834 (-)Ensembl
RefSeq Acc Id: NM_001035221   ⟹   NP_001030298
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8628,408,079 - 28,423,486 (-)NCBI
mRatBN7.2622,656,284 - 22,671,691 (-)NCBI
Rnor_6.0624,069,351 - 24,084,758 (+)NCBI
Rnor_5.0633,919,768 - 33,935,181 (+)NCBI
RGSC_v3.4622,758,416 - 22,773,823 (-)RGD
Celera622,192,616 - 22,208,062 (-)RGD
Sequence:
RefSeq Acc Id: XM_008764508   ⟹   XP_008762730
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8628,408,079 - 28,423,523 (-)NCBI
mRatBN7.2622,656,284 - 22,671,715 (-)NCBI
Rnor_6.0624,069,351 - 24,084,758 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008764509   ⟹   XP_008762731
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8628,408,079 - 28,422,948 (-)NCBI
mRatBN7.2622,656,284 - 22,671,105 (-)NCBI
Rnor_6.0624,070,157 - 24,084,758 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008764510   ⟹   XP_008762732
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8628,408,079 - 28,422,984 (-)NCBI
mRatBN7.2622,656,284 - 22,671,105 (-)NCBI
Rnor_6.0624,070,157 - 24,084,758 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039111904   ⟹   XP_038967832
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8628,408,079 - 28,422,895 (-)NCBI
mRatBN7.2622,656,284 - 22,671,105 (-)NCBI
RefSeq Acc Id: XM_039111905   ⟹   XP_038967833
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8628,408,079 - 28,423,523 (-)NCBI
mRatBN7.2622,656,284 - 22,671,688 (-)NCBI
RefSeq Acc Id: XM_039111907   ⟹   XP_038967835
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8628,408,079 - 28,423,523 (-)NCBI
mRatBN7.2622,656,284 - 22,671,715 (-)NCBI
RefSeq Acc Id: XM_063261618   ⟹   XP_063117688
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8628,408,079 - 28,422,895 (-)NCBI
RefSeq Acc Id: XM_063261619   ⟹   XP_063117689
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8628,408,079 - 28,422,578 (-)NCBI
RefSeq Acc Id: XM_063261620   ⟹   XP_063117690
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8628,408,079 - 28,422,895 (-)NCBI
RefSeq Acc Id: XM_063261622   ⟹   XP_063117692
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8628,408,079 - 28,423,523 (-)NCBI
RefSeq Acc Id: XM_063261623   ⟹   XP_063117693
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8628,408,079 - 28,422,895 (-)NCBI
RefSeq Acc Id: XM_063261624   ⟹   XP_063117694
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8628,408,079 - 28,422,624 (-)NCBI
RefSeq Acc Id: XM_063261625   ⟹   XP_063117695
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8628,408,079 - 28,423,453 (-)NCBI
RefSeq Acc Id: XR_005505462
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8628,408,079 - 28,423,536 (-)NCBI
mRatBN7.2622,656,284 - 22,671,741 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001030298   ⟸   NM_001035221
- UniProtKB: D4A4Q3 (UniProtKB/TrEMBL),   A6HA10 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008762730   ⟸   XM_008764508
- Peptide Label: isoform X1
- UniProtKB: D4A4Q3 (UniProtKB/TrEMBL),   A6HA10 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008762731   ⟸   XM_008764509
- Peptide Label: isoform X1
- UniProtKB: D4A4Q3 (UniProtKB/TrEMBL),   A6HA10 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008762732   ⟸   XM_008764510
- Peptide Label: isoform X1
- UniProtKB: D4A4Q3 (UniProtKB/TrEMBL),   A6HA10 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000038910   ⟸   ENSRNOT00000035362
RefSeq Acc Id: XP_038967835   ⟸   XM_039111907
- Peptide Label: isoform X1
- UniProtKB: D4A4Q3 (UniProtKB/TrEMBL),   A6HA10 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038967833   ⟸   XM_039111905
- Peptide Label: isoform X1
- UniProtKB: D4A4Q3 (UniProtKB/TrEMBL),   A6HA10 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038967832   ⟸   XM_039111904
- Peptide Label: isoform X1
- UniProtKB: D4A4Q3 (UniProtKB/TrEMBL),   A6HA10 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000092955   ⟸   ENSRNOT00000101401
RefSeq Acc Id: ENSRNOP00000083729   ⟸   ENSRNOT00000103854
RefSeq Acc Id: XP_063117692   ⟸   XM_063261622
- Peptide Label: isoform X1
- UniProtKB: A6HA10 (UniProtKB/TrEMBL),   D4A4Q3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063117695   ⟸   XM_063261625
- Peptide Label: isoform X1
- UniProtKB: A6HA10 (UniProtKB/TrEMBL),   D4A4Q3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063117690   ⟸   XM_063261620
- Peptide Label: isoform X1
- UniProtKB: A6HA10 (UniProtKB/TrEMBL),   D4A4Q3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063117688   ⟸   XM_063261618
- Peptide Label: isoform X1
- UniProtKB: A6HA10 (UniProtKB/TrEMBL),   D4A4Q3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063117693   ⟸   XM_063261623
- Peptide Label: isoform X1
- UniProtKB: A6HA10 (UniProtKB/TrEMBL),   D4A4Q3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063117694   ⟸   XM_063261624
- Peptide Label: isoform X1
- UniProtKB: A6HA10 (UniProtKB/TrEMBL),   D4A4Q3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063117689   ⟸   XM_063261619
- Peptide Label: isoform X1
- UniProtKB: A6HA10 (UniProtKB/TrEMBL),   D4A4Q3 (UniProtKB/TrEMBL)
Protein Domains
Yippee

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A4Q3-F1-model_v2 AlphaFold D4A4Q3 1-121 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694421
Promoter ID:EPDNEW_R4946
Type:multiple initiation site
Name:Ypel5_1
Description:yippee-like 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0624,064,740 - 24,064,800EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309657 AgrOrtholog
BioCyc Gene G2FUF-38407 BioCyc
Ensembl Genes ENSRNOG00000026742 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000035362 ENTREZGENE
  ENSRNOT00000035362.5 UniProtKB/TrEMBL
  ENSRNOT00000101401.1 UniProtKB/TrEMBL
  ENSRNOT00000103854.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7453174 IMAGE-MGC_LOAD
InterPro Yippee UniProtKB/TrEMBL
  Yippee UniProtKB/TrEMBL
  Yippee_fam UniProtKB/TrEMBL
KEGG Report rno:298792 UniProtKB/TrEMBL
MGC_CLONE MGC:125210 IMAGE-MGC_LOAD
NCBI Gene 298792 ENTREZGENE
PANTHER PROTEIN YIPPEE-LIKE 5 UniProtKB/TrEMBL
  PTHR13848 UniProtKB/TrEMBL
Pfam Yippee UniProtKB/TrEMBL
PhenoGen Ypel5 PhenoGen
PROSITE YIPPEE UniProtKB/TrEMBL
RatGTEx ENSRNOG00000026742 RatGTEx
UniProt A0A8I5ZWD7_RAT UniProtKB/TrEMBL
  A6HA10 ENTREZGENE, UniProtKB/TrEMBL
  D4A4Q3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Ypel5  yippee-like 5  LOC102553396  uncharacterized LOC102553396  Data merged from RGD:7593366 737654 PROVISIONAL
2015-07-30 Ypel5  yippee-like 5  Ypel5  yippee-like 5 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-12-18 LOC102553396  uncharacterized LOC102553396      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-12-06 Ypel5  yippee-like 5 (Drosophila)  Ypel5_predicted  yippee-like 5 (Drosophila) (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Ypel5_predicted  yippee-like 5 (Drosophila) (predicted)      Symbol and Name status set to approved 70820 APPROVED