Pkp4 (plakophilin 4) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Pkp4 (plakophilin 4) Rattus norvegicus
Analyze
Symbol: Pkp4
Name: plakophilin 4
RGD ID: 1307840
Description: Predicted to enable cadherin binding activity. Predicted to be involved in cell-cell adhesion; cell-cell junction assembly; and positive regulation of cytokinesis. Predicted to be located in several cellular components, including desmosome; postsynaptic density; and spindle. Predicted to be active in several cellular components, including adherens junction; nucleus; and plasma membrane. Predicted to colocalize with cell-cell contact zone and midbody. Orthologous to human PKP4 (plakophilin 4); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC295625; plakophilin-4
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8364,040,995 - 64,244,586 (+)NCBIGRCr8
mRatBN7.2343,632,364 - 43,835,834 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl343,631,880 - 43,835,474 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0345,211,097 - 45,414,524 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl345,277,348 - 45,414,613 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0350,328,374 - 50,531,152 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4340,859,032 - 41,062,477 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1340,785,055 - 40,958,851 (+)NCBI
Celera341,682,689 - 41,884,590 (+)NCBICelera
Cytogenetic Map3q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4-dinitrotoluene  (EXP)
2-methylcholine  (ISO)
2-palmitoylglycerol  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amitrole  (EXP)
aristolochic acid A  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
Brodifacoum  (EXP)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
CGP 52608  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (EXP)
cyclosporin A  (EXP,ISO)
DDT  (EXP)
dibutyl phthalate  (EXP)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
ethanol  (ISO)
fenthion  (ISO)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
glafenine  (EXP)
indometacin  (ISO)
levonorgestrel  (ISO)
methidathion  (ISO)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
p-toluidine  (EXP)
paracetamol  (EXP,ISO)
phenobarbital  (ISO)
phenylephrine  (EXP)
quercetin  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
sirolimus  (EXP)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
tacrolimus hydrate  (EXP)
tamibarotene  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
testosterone undecanoate  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
topotecan  (EXP)
triptonide  (ISO)
troglitazone  (ISO)
vinclozolin  (EXP)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:8937994   PMID:17114649   PMID:17115030   PMID:22965878  


Genomics

Comparative Map Data
Pkp4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8364,040,995 - 64,244,586 (+)NCBIGRCr8
mRatBN7.2343,632,364 - 43,835,834 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl343,631,880 - 43,835,474 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0345,211,097 - 45,414,524 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl345,277,348 - 45,414,613 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0350,328,374 - 50,531,152 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4340,859,032 - 41,062,477 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1340,785,055 - 40,958,851 (+)NCBI
Celera341,682,689 - 41,884,590 (+)NCBICelera
Cytogenetic Map3q21NCBI
PKP4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382158,456,952 - 158,681,429 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2158,456,952 - 158,682,879 (+)EnsemblGRCh38hg38GRCh38
GRCh372159,313,464 - 159,537,941 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362159,021,722 - 159,246,187 (+)NCBINCBI36Build 36hg18NCBI36
Build 342159,138,983 - 159,363,445NCBI
Celera2152,930,251 - 153,154,736 (+)NCBICelera
Cytogenetic Map2q24.1NCBI
HuRef2151,277,855 - 151,426,157 (+)NCBIHuRef
CHM1_12159,319,662 - 159,544,088 (+)NCBICHM1_1
T2T-CHM13v2.02158,913,757 - 159,138,252 (+)NCBIT2T-CHM13v2.0
Pkp4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39258,991,123 - 59,185,549 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl258,991,194 - 59,185,552 (+)EnsemblGRCm39 Ensembl
GRCm38259,160,850 - 59,355,205 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl259,160,850 - 59,355,208 (+)EnsemblGRCm38mm10GRCm38
MGSCv37258,998,907 - 59,193,262 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36258,961,859 - 59,156,042 (+)NCBIMGSCv36mm8
Celera260,907,299 - 61,046,531 (+)NCBICelera
Cytogenetic Map2C1.1NCBI
cM Map233.52NCBI
Pkp4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544914,833,945 - 15,051,007 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544914,835,423 - 15,050,237 (-)NCBIChiLan1.0ChiLan1.0
PKP4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21361,132,065 - 61,359,242 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B61,147,039 - 61,374,216 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B45,726,315 - 45,953,602 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B162,965,884 - 163,192,565 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B162,986,256 - 163,192,565 (+)Ensemblpanpan1.1panPan2
PKP4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1364,342,715 - 4,575,672 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl364,342,688 - 4,575,016 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha364,483,224 - 4,715,761 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0364,465,991 - 4,698,991 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl364,465,724 - 4,698,989 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1364,466,783 - 4,706,254 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0364,526,814 - 4,759,926 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0364,569,772 - 4,802,204 (+)NCBIUU_Cfam_GSD_1.0
Pkp4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303121,497,043 - 121,739,971 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646919,875,542 - 20,120,677 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646919,877,749 - 20,120,677 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PKP4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1565,431,111 - 65,680,887 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11565,431,173 - 65,680,891 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21572,627,850 - 72,886,964 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PKP4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11043,859,446 - 44,089,751 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1043,930,975 - 44,091,291 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040155,487,919 - 155,718,334 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pkp4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247326,970,728 - 7,208,842 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pkp4
1020 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:96
Count of miRNA genes:44
Interacting mature miRNAs:48
Transcripts:ENSRNOT00000007531, ENSRNOT00000059246
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)31077870450302886Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)31077870450302886Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)31695470861954708Rat
731172Bp151Blood pressure QTL 1510.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31831145447233430Rat
12879849Bw180Body weight QTL 1800.037body mass (VT:0001259)body weight (CMO:0000012)31831145447233430Rat
12879850Cm91Cardiac mass QTL 910.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)31831145447233430Rat
12879851Cm92Cardiac mass QTL 920.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)31831145447233430Rat
12879852Cm93Cardiac mass QTL 930.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)31831145447233430Rat
12879853Am5Aortic mass QTL 50.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)31831145447233430Rat
12879854Kidm63Kidney mass QTL 630.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)31831145447233430Rat
10450804Scl70Serum cholesterol level QTL 704.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32071409065714090Rat
10450794Scl69Serum cholesterol level QTL 696.30.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32071409065714090Rat
631832Sach1Saccharin preference QTL 12.70.02consumption behavior trait (VT:0002069)calculated saccharin drink intake volume (CMO:0001600)32749462144188411Rat
2313049Bss72Bone structure and strength QTL 722.60.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)32749462150302886Rat
2313076Bss74Bone structure and strength QTL 7420.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)32749462150302886Rat
2313079Bss73Bone structure and strength QTL 731.5tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)32749462150302886Rat
2313093Bmd77Bone mineral density QTL 772.20.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)32749462150302886Rat
2313101Bmd76Bone mineral density QTL 763.60.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)32749462150302886Rat
2302055Pia30Pristane induced arthritis QTL 303.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)32793691972936919Rat
9590286Uminl1Urine mineral level QTL 13.50.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)32824968773249687Rat
8694196Abfw2Abdominal fat weight QTL 216.580.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)32824968773249687Rat
8694386Bw159Body weight QTL 1594.520.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)32824968773249687Rat
8552950Pigfal12Plasma insulin-like growth factor 1 level QTL 127.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)32824968773249687Rat
9590136Scort3Serum corticosterone level QTL 323.370.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)32824968773249687Rat
2303593Gluco46Glucose level QTL 463blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)32846857173468571Rat
1354590Despr11Despair related QTL 110.000031locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)32846857173468571Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)33035677398535386Rat
61356Bp37Blood pressure QTL 373blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)33068464275684642Rat
631647Bp122Blood pressure QTL 1226.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)33068464275684642Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
11565451Bw177Body weight QTL 1770.002body mass (VT:0001259)body weight (CMO:0000012)33142640370668733Rat
11565452Kidm57Kidney mass QTL 570.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)33142640370668733Rat
12879866Cm94Cardiac mass QTL 940.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)33142640370668733Rat
12879867Cm95Cardiac mass QTL 950.047heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)33142640370668733Rat
12879868Am6Aortic mass QTL 60.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)33142640370668733Rat
2301400Cm68Cardiac mass QTL 680.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)33142640370668733Rat
1300169Bp177Blood pressure QTL 1772.96arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)33370334761017857Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)33370334778196190Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)333703347104104347Rat
10450852Stl33Serum triglyceride level QTL 333.40.05blood LDL triglyceride amount (VT:0010699)blood lipoprotein triglyceride level (CMO:0002685)33819223350749747Rat
10450816Scl75Serum cholesterol level QTL 754.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)33819223350749747Rat
10450813Scl74Serum cholesterol level QTL 745.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)33819223350749747Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)33851780383517803Rat
4889975Bmd81Bone mineral density QTL 814.3tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)33871036550302886Rat
634317Bw117Body weight QTL 1173.58abdominal fat pad mass (VT:1000711)abdominal fat pad weight to body weight ratio (CMO:0000095)33945463753296578Rat
2302276Bw82Body weight QTL 824.32body mass (VT:0001259)body weight (CMO:0000012)33945463762951183Rat
1331777Bw24Body weight QTL 243.503body mass (VT:0001259)body weight (CMO:0000012)33945463789115240Rat
1331795Rf30Renal function QTL 303.708urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)33945463789115240Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)341874578104104347Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)34382736490905114Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat

Markers in Region
D3Rat186  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2343,650,198 - 43,650,351 (+)MAPPERmRatBN7.2
Rnor_6.0345,228,240 - 45,228,392NCBIRnor6.0
Rnor_5.0350,344,849 - 50,345,001UniSTSRnor5.0
RGSC_v3.4340,876,100 - 40,876,252UniSTSRGSC3.4
RGSC_v3.4340,876,097 - 40,876,433RGDRGSC3.4
RGSC_v3.1340,772,472 - 40,772,624RGD
Celera341,700,202 - 41,700,354UniSTS
RH 3.4 Map3561.6RGD
RH 3.4 Map3561.6UniSTS
RH 2.0 Map3340.9RGD
SHRSP x BN Map331.7599RGD
Cytogenetic Map3q21UniSTS
D3Rat227  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2343,827,364 - 43,827,511 (+)MAPPERmRatBN7.2
Rnor_6.0345,406,058 - 45,406,204NCBIRnor6.0
Rnor_5.0350,522,686 - 50,522,832UniSTSRnor5.0
RGSC_v3.4341,054,013 - 41,054,159UniSTSRGSC3.4
RGSC_v3.4341,054,012 - 41,054,159RGDRGSC3.4
RGSC_v3.1340,950,385 - 40,950,531RGD
Celera341,876,124 - 41,876,270UniSTS
RH 3.4 Map3562.6RGD
RH 3.4 Map3562.6UniSTS
RH 2.0 Map3341.5RGD
SHRSP x BN Map330.1998RGD
Cytogenetic Map3q21UniSTS
D18Mco1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2183,287,248 - 3,287,445 (+)MAPPERmRatBN7.2
mRatBN7.2343,706,366 - 43,706,533 (+)MAPPERmRatBN7.2
Rnor_6.0183,524,613 - 3,524,807NCBIRnor6.0
Rnor_6.0345,284,413 - 45,284,579NCBIRnor6.0
Rnor_5.0183,534,088 - 3,534,282UniSTSRnor5.0
Rnor_5.0350,401,022 - 50,401,188UniSTSRnor5.0
RGSC_v3.4183,632,387 - 3,632,581UniSTSRGSC3.4
RGSC_v3.4340,932,267 - 40,932,433UniSTSRGSC3.4
RGSC_v3.1361,403,992 - 61,404,152RGD
Celera341,756,534 - 41,756,700UniSTS
Celera183,147,855 - 3,148,061UniSTS
Cytogenetic Map18p13UniSTS
Cytogenetic Map3q21UniSTS
RH133858  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2343,818,495 - 43,819,732 (+)MAPPERmRatBN7.2
Rnor_6.0345,397,189 - 45,398,425NCBIRnor6.0
Rnor_5.0350,513,817 - 50,515,053UniSTSRnor5.0
RGSC_v3.4341,045,144 - 41,046,380UniSTSRGSC3.4
Celera341,867,255 - 41,868,491UniSTS
RH 3.4 Map3560.2UniSTS
Cytogenetic Map3q21UniSTS
RH137757  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2343,749,849 - 43,750,016 (+)MAPPERmRatBN7.2
Rnor_6.0345,327,871 - 45,328,037NCBIRnor6.0
Rnor_5.0350,444,528 - 50,444,694UniSTSRnor5.0
RGSC_v3.4340,976,062 - 40,976,228UniSTSRGSC3.4
Celera341,799,531 - 41,799,697UniSTS
Cytogenetic Map3q21UniSTS
RH129057  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2343,835,668 - 43,835,830 (+)MAPPERmRatBN7.2
Rnor_6.0345,414,362 - 45,414,523NCBIRnor6.0
Rnor_5.0350,530,990 - 50,531,151UniSTSRnor5.0
RGSC_v3.4341,062,317 - 41,062,478UniSTSRGSC3.4
Celera341,884,428 - 41,884,589UniSTS
RH 3.4 Map3560.7UniSTS
Cytogenetic Map3q21UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 51 41 19 41 1 1 74 35 38 11 1
Low 6 7 10 3 7
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003749475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003753725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003753726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000059246   ⟹   ENSRNOP00000056013
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl343,632,409 - 43,835,445 (+)Ensembl
Rnor_6.0 Ensembl345,277,348 - 45,414,613 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000093790   ⟹   ENSRNOP00000081746
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl343,631,880 - 43,835,081 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000111282   ⟹   ENSRNOP00000080285
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl343,684,832 - 43,835,445 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000117979   ⟹   ENSRNOP00000087918
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl343,631,880 - 43,835,474 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000118961   ⟹   ENSRNOP00000086370
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl343,631,880 - 43,835,474 (+)Ensembl
RefSeq Acc Id: NM_001427440   ⟹   NP_001414369
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8364,040,995 - 64,244,586 (+)NCBI
RefSeq Acc Id: XM_006234216   ⟹   XP_006234278
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8364,041,636 - 64,244,586 (+)NCBI
mRatBN7.2343,633,242 - 43,835,834 (+)NCBI
Rnor_6.0345,211,098 - 45,414,524 (+)NCBI
Rnor_5.0350,328,374 - 50,531,152 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592152   ⟹   XP_017447641
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8364,041,122 - 64,244,586 (+)NCBI
mRatBN7.2343,699,306 - 43,835,081 (+)NCBI
Rnor_6.0345,211,098 - 45,414,524 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039106305   ⟹   XP_038962233
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8364,041,122 - 64,244,586 (+)NCBI
mRatBN7.2343,632,364 - 43,835,834 (+)NCBI
RefSeq Acc Id: XM_039106306   ⟹   XP_038962234
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8364,092,812 - 64,244,586 (+)NCBI
mRatBN7.2343,684,032 - 43,835,834 (+)NCBI
RefSeq Acc Id: XM_039106307   ⟹   XP_038962235
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8364,041,122 - 64,244,586 (+)NCBI
mRatBN7.2343,632,364 - 43,835,834 (+)NCBI
RefSeq Acc Id: XM_039106308   ⟹   XP_038962236
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8364,041,122 - 64,244,586 (+)NCBI
mRatBN7.2343,632,364 - 43,835,834 (+)NCBI
RefSeq Acc Id: XM_039106309   ⟹   XP_038962237
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8364,041,122 - 64,244,586 (+)NCBI
mRatBN7.2343,632,364 - 43,835,834 (+)NCBI
RefSeq Acc Id: XM_039106310   ⟹   XP_038962238
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8364,041,122 - 64,244,586 (+)NCBI
mRatBN7.2343,632,364 - 43,835,081 (+)NCBI
RefSeq Acc Id: XM_039106311   ⟹   XP_038962239
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8364,041,122 - 64,244,586 (+)NCBI
mRatBN7.2343,632,364 - 43,835,081 (+)NCBI
RefSeq Acc Id: XM_039106314   ⟹   XP_038962242
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8364,041,122 - 64,244,586 (+)NCBI
mRatBN7.2343,699,306 - 43,835,081 (+)NCBI
RefSeq Acc Id: XM_039106315   ⟹   XP_038962243
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8364,041,122 - 64,244,586 (+)NCBI
mRatBN7.2343,699,306 - 43,835,081 (+)NCBI
RefSeq Acc Id: XM_039106316   ⟹   XP_038962244
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8364,041,122 - 64,244,586 (+)NCBI
mRatBN7.2343,632,364 - 43,835,453 (+)NCBI
RefSeq Acc Id: XM_039106317   ⟹   XP_038962245
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8364,041,122 - 64,244,586 (+)NCBI
mRatBN7.2343,699,306 - 43,835,453 (+)NCBI
RefSeq Acc Id: XM_039106318   ⟹   XP_038962246
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8364,041,122 - 64,244,586 (+)NCBI
mRatBN7.2343,699,306 - 43,835,453 (+)NCBI
RefSeq Acc Id: XM_039106321   ⟹   XP_038962249
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8364,041,123 - 64,244,586 (+)NCBI
mRatBN7.2343,632,374 - 43,835,834 (+)NCBI
RefSeq Acc Id: XM_039106322   ⟹   XP_038962250
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8364,108,062 - 64,244,586 (+)NCBI
mRatBN7.2343,632,381 - 43,835,834 (+)NCBI
RefSeq Acc Id: XM_039106324   ⟹   XP_038962252
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8364,108,062 - 64,244,586 (+)NCBI
mRatBN7.2343,699,320 - 43,835,834 (+)NCBI
RefSeq Acc Id: XM_039106325   ⟹   XP_038962253
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8364,157,759 - 64,244,586 (+)NCBI
mRatBN7.2343,748,995 - 43,835,834 (+)NCBI
RefSeq Acc Id: XM_063283250   ⟹   XP_063139320
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8364,092,844 - 64,244,586 (+)NCBI
RefSeq Acc Id: XM_063283251   ⟹   XP_063139321
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8364,041,122 - 64,244,586 (+)NCBI
RefSeq Acc Id: XM_063283252   ⟹   XP_063139322
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8364,041,122 - 64,244,586 (+)NCBI
RefSeq Acc Id: XM_063283253   ⟹   XP_063139323
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8364,041,122 - 64,244,586 (+)NCBI
RefSeq Acc Id: XM_063283254   ⟹   XP_063139324
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8364,092,845 - 64,244,586 (+)NCBI
RefSeq Acc Id: XM_063283255   ⟹   XP_063139325
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8364,041,122 - 64,244,586 (+)NCBI
RefSeq Acc Id: XM_063283256   ⟹   XP_063139326
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8364,041,122 - 64,244,586 (+)NCBI
RefSeq Acc Id: XM_063283257   ⟹   XP_063139327
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8364,041,122 - 64,244,586 (+)NCBI
RefSeq Acc Id: XM_063283258   ⟹   XP_063139328
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8364,041,122 - 64,244,586 (+)NCBI
RefSeq Acc Id: XM_063283259   ⟹   XP_063139329
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8364,041,122 - 64,244,586 (+)NCBI
RefSeq Acc Id: XM_063283260   ⟹   XP_063139330
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8364,108,062 - 64,244,586 (+)NCBI
RefSeq Acc Id: XM_063283261   ⟹   XP_063139331
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8364,108,062 - 64,244,586 (+)NCBI
RefSeq Acc Id: XM_063283262   ⟹   XP_063139332
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8364,108,062 - 64,244,586 (+)NCBI
RefSeq Acc Id: XM_063283263   ⟹   XP_063139333
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8364,108,062 - 64,244,586 (+)NCBI
RefSeq Acc Id: XM_063283264   ⟹   XP_063139334
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8364,108,062 - 64,244,586 (+)NCBI
RefSeq Acc Id: XM_063283265   ⟹   XP_063139335
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8364,108,062 - 64,244,586 (+)NCBI
RefSeq Acc Id: XM_063283266   ⟹   XP_063139336
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8364,108,062 - 64,244,586 (+)NCBI
RefSeq Acc Id: XM_063283267   ⟹   XP_063139337
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8364,108,062 - 64,244,586 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001414369 (Get FASTA)   NCBI Sequence Viewer  
  XP_006234278 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447641 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962233 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962234 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962235 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962236 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962237 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962238 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962239 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962242 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962243 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962244 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962245 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962246 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962249 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962250 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962252 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962253 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139320 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139321 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139322 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139323 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139324 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139325 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139326 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139327 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139328 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139329 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139330 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139331 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139332 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139333 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139334 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139335 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139336 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139337 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM00397 (Get FASTA)   NCBI Sequence Viewer  
  EDM00398 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000056013.4
  ENSRNOP00000080285.1
  ENSRNOP00000081746.1
  ENSRNOP00000086370
  ENSRNOP00000086370.1
  ENSRNOP00000087918.1
RefSeq Acc Id: XP_006234278   ⟸   XM_006234216
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZTQ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447641   ⟸   XM_017592152
- Peptide Label: isoform X10
- UniProtKB: A0A8I5ZTQ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000056013   ⟸   ENSRNOT00000059246
RefSeq Acc Id: XP_038962233   ⟸   XM_039106305
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZTQ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962235   ⟸   XM_039106307
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZTQ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962236   ⟸   XM_039106308
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZTQ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962237   ⟸   XM_039106309
- Peptide Label: isoform X5
- UniProtKB: A0A8I5ZTQ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962244   ⟸   XM_039106316
- Peptide Label: isoform X13
- UniProtKB: A0A8I5ZTQ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962238   ⟸   XM_039106310
- Peptide Label: isoform X4
- UniProtKB: A0A8I5ZTQ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962239   ⟸   XM_039106311
- Peptide Label: isoform X6
- UniProtKB: A0A8I5ZTQ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962249   ⟸   XM_039106321
- Peptide Label: isoform X21
- UniProtKB: A0A8I5ZTQ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962250   ⟸   XM_039106322
- Peptide Label: isoform X21
- UniProtKB: A0A8I5ZTQ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962234   ⟸   XM_039106306
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZTQ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962245   ⟸   XM_039106317
- Peptide Label: isoform X18
- UniProtKB: A0A8I5ZTQ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962246   ⟸   XM_039106318
- Peptide Label: isoform X20
- UniProtKB: A0A8I5ZTQ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962242   ⟸   XM_039106314
- Peptide Label: isoform X11
- UniProtKB: A0A8I5ZTQ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962243   ⟸   XM_039106315
- Peptide Label: isoform X12
- UniProtKB: A0A8I5ZTQ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962252   ⟸   XM_039106324
- Peptide Label: isoform X21
- UniProtKB: A0A8I5ZTQ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962253   ⟸   XM_039106325
- Peptide Label: isoform X21
- UniProtKB: A0A8I5ZTQ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000086370   ⟸   ENSRNOT00000118961
RefSeq Acc Id: ENSRNOP00000080285   ⟸   ENSRNOT00000111282
RefSeq Acc Id: ENSRNOP00000087918   ⟸   ENSRNOT00000117979
RefSeq Acc Id: ENSRNOP00000081746   ⟸   ENSRNOT00000093790
RefSeq Acc Id: NP_001414369   ⟸   NM_001427440
- UniProtKB: A0A8I6A880 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139327   ⟸   XM_063283257
- Peptide Label: isoform X16
RefSeq Acc Id: XP_063139325   ⟸   XM_063283255
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063139322   ⟸   XM_063283252
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063139326   ⟸   XM_063283256
- Peptide Label: isoform X15
- UniProtKB: A0A8I6A222 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139328   ⟸   XM_063283258
- Peptide Label: isoform X17
RefSeq Acc Id: XP_063139321   ⟸   XM_063283251
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063139323   ⟸   XM_063283253
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063139329   ⟸   XM_063283259
- Peptide Label: isoform X19
RefSeq Acc Id: XP_063139320   ⟸   XM_063283250
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063139324   ⟸   XM_063283254
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063139331   ⟸   XM_063283261
- Peptide Label: isoform X21
RefSeq Acc Id: XP_063139333   ⟸   XM_063283263
- Peptide Label: isoform X21
RefSeq Acc Id: XP_063139335   ⟸   XM_063283265
- Peptide Label: isoform X21
RefSeq Acc Id: XP_063139332   ⟸   XM_063283262
- Peptide Label: isoform X21
RefSeq Acc Id: XP_063139330   ⟸   XM_063283260
- Peptide Label: isoform X21
RefSeq Acc Id: XP_063139337   ⟸   XM_063283267
- Peptide Label: isoform X22
RefSeq Acc Id: XP_063139336   ⟸   XM_063283266
- Peptide Label: isoform X21
RefSeq Acc Id: XP_063139334   ⟸   XM_063283264
- Peptide Label: isoform X21

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M2K6-F1-model_v2 AlphaFold F1M2K6 1-1190 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307840 AgrOrtholog
BioCyc Gene G2FUF-49643 BioCyc
Ensembl Genes ENSRNOG00000005504 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000059246.6 UniProtKB/TrEMBL
  ENSRNOT00000093790.1 UniProtKB/TrEMBL
  ENSRNOT00000111282.1 UniProtKB/TrEMBL
  ENSRNOT00000117979.1 UniProtKB/TrEMBL
  ENSRNOT00000118961.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Armadillo UniProtKB/TrEMBL
  Plakophilin/d_Catenin UniProtKB/TrEMBL
NCBI Gene 295625 ENTREZGENE
PANTHER PTHR10372 UniProtKB/TrEMBL
  PTHR10372:SF8 UniProtKB/TrEMBL
Pfam Arm UniProtKB/TrEMBL
PhenoGen Pkp4 PhenoGen
PROSITE ARM_REPEAT UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005504 RatGTEx
SMART ARM UniProtKB/TrEMBL
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
UniProt A0A8I5ZP98_RAT UniProtKB/TrEMBL
  A0A8I5ZTQ8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A222 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A880 ENTREZGENE, UniProtKB/TrEMBL
  F1M2K6_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Pkp4  plakophilin 4   Pkp4_predicted  plakophilin 4 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Pkp4_predicted  plakophilin 4 (predicted)      Symbol and Name status set to approved 70820 APPROVED