Zfp330 (zinc finger protein 330) - Rat Genome Database

Name: Zfp330
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Zfp330 (zinc finger protein 330) Rattus norvegicus

Analyze

Symbol:

Zfp330

Name:

zinc finger protein 330

RGD ID:

1307510

Description:

Predicted to enable zinc ion binding activity. Predicted to be located in chromosome, centromeric region; midbody; and nuclear lumen. Predicted to be active in nucleus. Orthologous to human ZNF330 (zinc finger protein 330); INTERACTS WITH 2,4-dinitrotoluene; bisphenol A; cobalt dichloride.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC103694300; LOC361387; uncharacterized LOC103694300

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZNF330 (zinc finger protein 330)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Zfp330 (zinc finger protein 330)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Znf330 (zinc finger protein 330)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZNF330 (zinc finger protein 330)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZNF330 (zinc finger protein 330)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Znf330 (zinc finger protein 330)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZNF330 (zinc finger protein 330)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZNF330 (zinc finger protein 330)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Znf330 (zinc finger protein 330)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	TRAV14DV4 (T cell receptor alpha variable 14/delta variable 4)	HGNC	OMA
Homo sapiens (human):	TRAV19 (T cell receptor alpha variable 19)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	ZNF330 (zinc finger protein 330)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Zfp330 (zinc finger protein 330)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	znf330 (zinc finger protein 330)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Noa36	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	znf330	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	42,218,213 - 42,229,516 (+)	NCBI		GRCr8
mRatBN7.2	19	25,313,655 - 25,324,958 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	25,313,655 - 25,324,958 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	32,155,739 - 32,167,025 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	32,809,802 - 32,821,088 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	35,025,264 - 35,036,550 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	23,936,522 - 23,946,900 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	23,936,505 - 23,946,900 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	34,916,045 - 34,926,423 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	27,048,575 - 27,059,878 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	19	27,028,736 - 27,064,683 (+)	NCBI
Celera	19	24,853,332 - 24,864,637 (+)	NCBI		Celera
Cytogenetic Map	19	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-dinitrotoluene (EXP)

2-hydroxypropanoic acid (ISO)

2-methylcholine (ISO)

5-aza-2'-deoxycytidine (ISO)

aristolochic acid A (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

carbamazepine (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

cobalt dichloride (EXP)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

Di-n-octyl phthalate (ISO)

dicrotophos (ISO)

doxorubicin (ISO)

fluoranthene (ISO)

folic acid (ISO)

genistein (EXP)

gentamycin (EXP)

lead diacetate (ISO)

methotrexate (ISO)

methylparaben (ISO)

nickel dichloride (EXP)

paracetamol (ISO)

phenobarbital (ISO)

pinosylvin (ISO)

rac-lactic acid (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

trans-pinosylvin (ISO)

triptonide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

chromosome, centromeric region (ISO)

midbody (ISO)

nucleolus (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IBA)

Molecular Function

protein binding (ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10593942

Genomics

Comparative Map Data

Zfp330
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	42,218,213 - 42,229,516 (+)	NCBI		GRCr8
mRatBN7.2	19	25,313,655 - 25,324,958 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	25,313,655 - 25,324,958 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	32,155,739 - 32,167,025 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	32,809,802 - 32,821,088 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	35,025,264 - 35,036,550 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	23,936,522 - 23,946,900 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	23,936,505 - 23,946,900 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	34,916,045 - 34,926,423 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	27,048,575 - 27,059,878 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	19	27,028,736 - 27,064,683 (+)	NCBI
Celera	19	24,853,332 - 24,864,637 (+)	NCBI		Celera
Cytogenetic Map	19	q11	NCBI

ZNF330
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	141,220,535 - 141,234,697 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	141,220,887 - 141,234,697 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	142,142,049 - 142,155,851 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	142,361,547 - 142,375,301 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	4	142,499,701 - 142,513,453	NCBI
Celera	4	139,472,797 - 139,486,599 (+)	NCBI		Celera
Cytogenetic Map	4	q31.21	NCBI
HuRef	4	137,871,686 - 137,885,488 (+)	NCBI		HuRef
CHM1_1	4	142,119,447 - 142,133,249 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	144,540,345 - 144,554,401 (+)	NCBI		T2T-CHM13v2.0

Zfp330
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	83,490,247 - 83,500,774 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	83,490,236 - 83,500,789 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	82,763,618 - 82,774,145 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	82,763,607 - 82,774,160 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	85,287,519 - 85,298,025 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	85,653,725 - 85,664,231 (-)	NCBI		MGSCv36	mm8
Celera	8	87,063,097 - 87,073,634 (-)	NCBI		Celera
Cytogenetic Map	8	C2	NCBI
cM Map	8	39.58	NCBI

Znf330
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955471	1,933,451 - 1,947,124 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955471	1,933,675 - 1,946,572 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZNF330
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	139,093,924 - 139,109,748 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	139,481,076 - 139,496,887 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	133,580,533 - 133,594,798 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	144,883,845 - 144,898,126 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	144,884,319 - 144,898,126 (+)	Ensembl	panpan1.1		panPan2

ZNF330
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	19	1,730,999 - 1,752,877 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	19	1,731,641 - 1,752,772 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	19	1,977,100 - 1,999,196 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	19	1,791,507 - 1,815,292 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	19	1,791,509 - 1,815,242 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	19	1,732,486 - 1,754,555 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	19	2,093,325 - 2,115,440 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	19	2,449,431 - 2,471,426 (-)	NCBI		UU_Cfam_GSD_1.0

Znf330
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405301	49,306,839 - 49,319,715 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936535	6,744,876 - 6,755,930 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936535	6,744,179 - 6,757,085 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZNF330
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	86,019,115 - 86,036,201 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	86,019,111 - 86,036,738 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	91,327,714 - 91,340,812 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZNF330
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	88,133,603 - 88,146,584 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	88,133,623 - 88,147,303 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	67,666,255 - 67,679,468 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Znf330
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624853	621,675 - 637,130 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624853	622,392 - 634,696 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Zfp330
49 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	53
Count of miRNA genes:	49
Interacting mature miRNAs:	51
Transcripts:	ENSRNOT00000004614
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10054132	Srcrt9	Stress Responsive Cort QTL 9	2.87	0.0017	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	19	1	27355345	Rat
631678	Cm9	Cardiac mass QTL 9	4.27	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	19	1	28982497	Rat
631681	Cm12	Cardiac mass QTL 12	3.33	0.00053	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	19	1	28982497	Rat
1549847	Bss8	Bone structure and strength QTL 8	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	19	1	31963836	Rat
9590298	Uminl5	Urine mineral level QTL 5	3.59	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	19	1	36824771	Rat
8552935	Pigfal10	Plasma insulin-like growth factor 1 level QTL 10	5.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	19	1	36824771	Rat
9590250	Scort11	Serum corticosterone level QTL 11	23.45	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	19	1	36824771	Rat
9590090	Insglur8	Insulin/glucose ratio QTL 8	10.81	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	19	1	36824771	Rat
9589102	Slep13	Serum leptin concentration QTL 13	4.63	0.001	blood leptin amount (VT:0005667)	plasma leptin level (CMO:0000781)	19	569374	45569374	Rat
8694186	Bw152	Body weight QTL 152	3.34	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	569374	45569374	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2187927	46708701	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2187927	56457239	Rat
61447	Tcas1	Tongue tumor susceptibility QTL 1	6.08		tongue integrity trait (VT:0010553)	squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)	19	2316121	47316121	Rat
2317848	Alcrsp21	Alcohol response QTL 21	1.899999976158142	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	19	3204777	48204777	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	4096155	55283277	Rat
724518	Uae19	Urinary albumin excretion QTL 19	5.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	7457249	42983518	Rat
724565	Tcas5	Tongue tumor susceptibility QTL 5	10.04		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	19	9977753	39654489	Rat
61423	Cia14	Collagen induced arthritis QTL 14	3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	19	10827970	43544039	Rat
61407	Scl12	Serum cholesterol level QTL 12		0.001	blood HDL cholesterol amount (VT:0000184)	serum high density lipoprotein cholesterol level (CMO:0000361)	19	13926401	30303727	Rat
1558656	Prcs1	Prostate cancer susceptibility QTL 1	5		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	19	15114598	34521833	Rat
7411549	Bw130	Body weight QTL 130	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	15455860	57337602	Rat
1331788	Rf45	Renal function QTL 45	2.818		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	19	15605023	46559041	Rat
1578764	Stresp19	Stress response QTL 19	3.6	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	19	15630201	57337602	Rat
2298478	Eau8	Experimental allergic uveoretinitis QTL 8		0.0163	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	19	17154433	57337602	Rat
61350	Bp32	Blood pressure QTL 32		0.012	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	19	20483575	57337602	Rat
61328	Eae8	Experimental allergic encephalomyelitis QTL 8	4		nervous system integrity trait (VT:0010566)	percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)	19	24816041	33061905	Rat
1549835	Tcas7	Tongue tumor susceptibility QTL 7		0.001	tongue integrity trait (VT:0010553)	squamous cell carcinoma of the head and neck tumor number (CMO:0001876)	19	24817978	39654489	Rat

Markers in Region

RH129701

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	25,324,741 - 25,324,891 (-)	MAPPER	mRatBN7.2
Rnor_6.0	19	23,936,589 - 23,936,738	NCBI	Rnor6.0
Rnor_5.0	19	34,916,112 - 34,916,261	UniSTS	Rnor5.0
RGSC_v3.4	19	27,059,662 - 27,059,811	UniSTS	RGSC3.4
Celera	19	24,864,421 - 24,864,570	UniSTS
Cytogenetic Map	19	q11	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	57	41	19	41	8	11	74	35	41	11	8
Low
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108443	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473972	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000004614 ⟹ ENSRNOP00000004614

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	25,313,655 - 25,324,958 (+)	Ensembl
Rnor_6.0 Ensembl	19	23,936,522 - 23,946,900 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000080337 ⟹ ENSRNOP00000071964

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	19	23,936,505 - 23,944,820 (-)	Ensembl

RefSeq Acc Id:

NM_001108443 ⟹ NP_001101913

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	42,218,213 - 42,229,516 (+)	NCBI
mRatBN7.2	19	25,313,655 - 25,324,958 (+)	NCBI
Rnor_6.0	19	23,936,522 - 23,946,900 (-)	NCBI
Rnor_5.0	19	34,916,045 - 34,926,423 (-)	NCBI
RGSC_v3.4	19	27,048,575 - 27,059,878 (+)	RGD
Celera	19	24,853,332 - 24,864,637 (+)	RGD

Sequence:

show sequence

GACTTTTCAATTCTCTGAGTAAAATAATAAAATTAGAATGAGATAGCAGAGGCCTTGAGATCCT
GAGGCTCTCTGACCGCTACTCGCAACGCTGGCGCTTCTTCTCTTCCTAGCAAGTCCACTTCCGG
GAAGGCGAGCTCTCCCCCTCCTCCGGAAGGGGGCGAGGTCGGGGCGGAGCAAGCAGAACTGGGC
GGGACGCGCTGGACTCTTCCGGTTACGTGTGCAACCTTGGTGCTCTGACGTTGCAGGATATCCG
GTCTCTCGCCCACTGTTGGAAACGGGCTGTGTCTGCCATTCCGGCCCGCGGCTTGGCCTCGCCT
CTGCGTCCTCGGCCACTGAGAAAGAAGGGAACATGCCGAAAAAGAAGACTGGAGCAAGGAAGAA
GGCAGAAAACCGCCGCGAACGAGAGAAACAACTCAGAGCATCAAGAAGTACCGTTGACCTAGCC
AAGCACCCGTGCAATGCTTCAATGGAATGTGACAAGTGTCAGAGGCGGCAGAAGAATAGAGCAT
TTTGCTATTTTTGTAACTCTGTTCAGAAGTTACCAATCTGTGCACAGTGTGGAAAGACCAAGTG
CATGATGAAGTCTTCAGACTGCGTCATCAAGCATGCTGGCGTGTACAGCACTGGCCTCGCCATG
GTGGGCGCAATATGTGACTTCTGCGAAGCATGGGTTTGCCACGGGAGGAAGTGTCTTAGCACCC
ACGCCTGTGCCTGCCCACTCACAGATGCAGAGTGTGTGGAGTGTGAGCGAGGGGTGTGGGACCA
CGGAGGCAGAATATTCAGCTGTTCATTTTGCCATAATTTTCTCTGTGAAGATGACCAGTTTGAG
CATCAGGCCAGCTGCCAAGTTTTAGAAGCGGAAACATTTAAATGTGTTTCCTGTAATCGACTTG
GCCAGCACTCATGTCTCCGATGTAAGGCTTGTTTCTGTGATGAACATACAAGGAGCAAAGTGTT
TAAGCAAGAAAAAGGGAAACAACCTCCGTGCCCTAAATGTGGGCATGAAACGCAGGAGACAAAG
GATCTTAGCATGTCAACACGCTCCTTGAAATTTGGCAGGCAGACTGGAGGAGAAGAAGGAGATG
GAGCTTCTGGGTATGATGCTTACTGGAAGAACCTGTCGTCGGACAAGTATGGAGATACTGGATA
CCGTGATGAGGAGGAGGAGGAGGAGGAAGCAGAGGATGATGAAGAGGACGATGGGAAGGACTCA
GATGCTGAGTCATCAGATCTGTTCAATAATTTGAACTTAGGAAGGACCTATGCCAGTGGCTATG
CTCACTATGAGGAGCAGGAGAACTAGGAGCCGCTCCTTGTTGGCGCTTGTGGGAAGAGCAGGCT
GAATCATGAGGATGCTCAGACGTACCCCCCTTGGTCTTGTCCAAAAGGCCTGTCACACTAGGCT
CGGGTAGGTTCTAACAGTTTCATAGGAACTGCTCTGTGAACTTGCAGTGTACATCAAATGAGTT
AAATGTAAGACAAATGGAGTATCATGGATTGGATTATTACTGAGTTCAATAATCTGGTGCGTTT
TACCAGTTAGGAACATAATAAACTACATGATAAAGGAATAGAAAGGAAATATATTTATTTGAAA
TGAAATTACTGTCTTTATTAAAGGCACTGCTTATAAATTCATGTCTGATTTTACAAAGTGTAAC
GGGTAAAATTACTGTATTCTTCGTCTATTTCAATCCATACACGATAGTCATGTTACATTCTGTT
TCTCACTGACTTGACGCTGTGTAATATTCACATCTGCATTCGTGGTTGGCATGTTCACTGTTTG
CGTACAATGCGTGTCCTCTGCAGTGCTTCATAATGGCAGGACTAGTGTTGCTGATACTTCACCT
AGGGAACCTGAGATTAAAATAAACTTAGTATTATATACTTGAATACTTTTGATACTGAGTTCTT

hide sequence

Protein Sequences


Protein RefSeqs	NP_001101913	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL92288	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000004614
	ENSRNOP00000004614.5

RefSeq Acc Id:

NP_001101913 ⟸ NM_001108443

- UniProtKB:

D3ZSN4 (UniProtKB/TrEMBL), A6IYG0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPKKKTGARKKAENRREREKQLRASRSTVDLAKHPCNASMECDKCQRRQKNRAFCYFCNSVQKL
PICAQCGKTKCMMKSSDCVIKHAGVYSTGLAMVGAICDFCEAWVCHGRKCLSTHACACPLTDAE
CVECERGVWDHGGRIFSCSFCHNFLCEDDQFEHQASCQVLEAETFKCVSCNRLGQHSCLRCKAC
FCDEHTRSKVFKQEKGKQPPCPKCGHETQETKDLSMSTRSLKFGRQTGGEEGDGASGYDAYWKN
LSSDKYGDTGYRDEEEEEEEAEDDEEDDGKDSDAESSDLFNNLNLGRTYASGYAHYEEQEN

hide sequence

RefSeq Acc Id:

ENSRNOP00000071964 ⟸ ENSRNOT00000080337

RefSeq Acc Id:

ENSRNOP00000004614 ⟸ ENSRNOT00000004614

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZSN4-F1-model_v2	AlphaFold	D3ZSN4	1-317	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700994

Promoter ID:

EPDNEW_R11517

Type:

multiple initiation site

Name:

Zfp330_1

Description:

zinc finger protein 330

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	19	23,946,633 - 23,946,693	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307510	AgrOrtholog
BioCyc Gene	G2FUF-5992	BioCyc
Ensembl Genes	ENSRNOG00000003461	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000004614	ENTREZGENE
	ENSRNOT00000004614.6	UniProtKB/TrEMBL
InterPro	NOA36	UniProtKB/TrEMBL
KEGG Report	rno:361387	UniProtKB/TrEMBL
NCBI Gene	361387	ENTREZGENE
PANTHER	NOA36	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN 330	UniProtKB/TrEMBL
Pfam	NOA36	UniProtKB/TrEMBL
PhenoGen	Zfp330	PhenoGen
RatGTEx	ENSRNOG00000003461	RatGTEx
UniProt	A6IYG0	ENTREZGENE, UniProtKB/TrEMBL
	D3ZSN4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Zfp330	zinc finger protein 330	LOC103694300	uncharacterized LOC103694300	Data merged from RGD:9098364	737654	PROVISIONAL
2014-08-25	LOC103694300	uncharacterized LOC103694300			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-04-30	Zfp330	zinc finger protein 330	Zfp330_predicted	zinc finger protein 330 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Zfp330_predicted	zinc finger protein 330 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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