Lmo2 (LIM domain only 2) - Rat Genome Database

Name: Lmo2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Lmo2 (LIM domain only 2) Rattus norvegicus

Analyze

Symbol:

Lmo2

Name:

LIM domain only 2

RGD ID:

1307101

Description:

Predicted to enable several functions, including DNA-binding transcription factor binding activity; identical protein binding activity; and transcription coactivator activity. Predicted to contribute to DNA binding activity. Predicted to be involved in negative regulation of erythrocyte differentiation and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within embryonic hemopoiesis. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Orthologous to human LMO2 (LIM domain only 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acetamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC362176; MGC124678; rhombotin-2

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	LMO2 (LIM domain only 2)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Lmo2 (LIM domain only 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Lmo2 (LIM domain only 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LMO2 (LIM domain only 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LMO2 (LIM domain only 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Lmo2 (LIM domain only 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LMO2 (LIM domain only 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LMO2 (LIM domain only 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Lmo2 (LIM domain only 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	LMO2 (LIM domain only 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Lmo2 (LIM domain only 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	lmo2 (LIM domain only 2 (rhombotin-like 1))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	lmo2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	110,810,162 - 110,832,895 (+)	NCBI		GRCr8
mRatBN7.2	3	90,355,234 - 90,377,970 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	90,365,883 - 90,377,953 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	93,848,260 - 93,870,995 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	102,447,339 - 102,470,072 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	100,277,857 - 100,300,590 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	93,909,156 - 93,931,888 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	93,909,156 - 93,931,871 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	100,549,307 - 100,572,039 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	89,356,199 - 89,367,641 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	89,252,944 - 89,263,314 (+)	NCBI
Celera	3	89,416,677 - 89,439,412 (+)	NCBI		Celera
Cytogenetic Map	3	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

Experimental Liver Cirrhosis (ISO)

genetic disease (ISO)

intellectual disability (ISO)

T-cell acute lymphoblastic leukemia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

4,4'-diaminodiphenylmethane (ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

arsenous acid (ISO)

belinostat (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

buta-1,3-diene (ISO)

butanal (ISO)

cadmium dichloride (EXP)

calcitriol (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chloroprene (ISO)

cisplatin (ISO)

deoxynivalenol (ISO)

diarsenic trioxide (ISO)

dibenz[a,h]anthracene (ISO)

dibutyl phthalate (EXP)

dioxygen (ISO)

diquat (ISO)

dorsomorphin (ISO)

endosulfan (EXP)

flusilazole (EXP)

furan (EXP)

isotretinoin (ISO)

lipopolysaccharide (ISO)

N-nitrosodimethylamine (EXP)

N-Nitrosopyrrolidine (ISO)

O-methyleugenol (ISO)

ozone (ISO)

panobinostat (ISO)

pentanal (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

phenylmercury acetate (ISO)

phorbol 13-acetate 12-myristate (ISO)

pomalidomide (ISO)

propanal (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

temozolomide (ISO)

testosterone (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

trichloroethene (EXP)

trichostatin A (ISO)

triclosan (ISO)

valproic acid (ISO)

vorinostat (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

embryonic hemopoiesis (ISO)

negative regulation of erythrocyte differentiation (ISO)

positive regulation of transcription by RNA polymerase II (ISO)

Cellular Component

nucleus (IBA,ISO)

protein-containing complex (ISO)

transcription regulator complex (ISO)

Molecular Function

bHLH transcription factor binding (ISO)

chromatin binding (ISO)

DNA binding (ISO)

DNA-binding transcription factor binding (IBA)

identical protein binding (ISO)

metal ion binding (IEA)

protein binding (ISO)

RNA polymerase II-specific DNA-binding transcription factor binding (ISO)

transcription coactivator activity (IBA,ISO)

transcription coregulator binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Comprehensive gene review and curation	RGD comprehensive gene curation
7.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:9391090	PMID:10631184	PMID:16314316	PMID:18184866	PMID:19011221	PMID:19375645

Genomics

Comparative Map Data

Lmo2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	110,810,162 - 110,832,895 (+)	NCBI		GRCr8
mRatBN7.2	3	90,355,234 - 90,377,970 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	90,365,883 - 90,377,953 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	93,848,260 - 93,870,995 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	102,447,339 - 102,470,072 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	100,277,857 - 100,300,590 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	93,909,156 - 93,931,888 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	93,909,156 - 93,931,871 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	100,549,307 - 100,572,039 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	89,356,199 - 89,367,641 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	89,252,944 - 89,263,314 (+)	NCBI
Celera	3	89,416,677 - 89,439,412 (+)	NCBI		Celera
Cytogenetic Map	3	q32	NCBI

LMO2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	33,858,576 - 33,892,076 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	33,858,576 - 33,892,076 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	33,880,122 - 33,913,623 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	33,836,698 - 33,870,412 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	33,836,700 - 33,870,412	NCBI
Celera	11	34,027,627 - 34,061,421 (-)	NCBI		Celera
Cytogenetic Map	11	p13	NCBI
HuRef	11	33,576,315 - 33,610,063 (-)	NCBI		HuRef
CHM1_1	11	33,879,643 - 33,913,368 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	33,995,616 - 34,029,225 (-)	NCBI		T2T-CHM13v2.0

Lmo2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	103,788,309 - 103,812,223 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	103,788,331 - 103,812,223 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	103,957,903 - 103,981,878 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	103,957,986 - 103,981,878 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	103,798,152 - 103,822,035 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	103,771,062 - 103,782,713 (+)	NCBI		MGSCv36	mm8
Celera	2	105,204,167 - 105,227,999 (+)	NCBI		Celera
Cytogenetic Map	2	E2	NCBI
cM Map	2	54.46	NCBI

Lmo2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	12,354,845 - 12,362,470 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955422	12,354,865 - 12,362,026 (+)	NCBI	ChiLan1.0	ChiLan1.0

LMO2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	36,077,833 - 36,110,953 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	36,082,565 - 36,115,729 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	33,830,370 - 33,863,960 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	33,712,099 - 33,720,729 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

LMO2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Dog10K_Boxer_Tasha	18	33,481,882 - 33,492,473 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	34,487,785 - 34,497,780 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	18	34,045,610 - 34,056,746 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	33,639,096 - 33,649,686 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	34,274,467 - 34,285,055 (+)	NCBI		UU_Cfam_GSD_1.0

Lmo2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	30,982,272 - 30,992,326 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936533	4,107,067 - 4,117,222 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936533	4,107,073 - 4,117,121 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LMO2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	27,044,763 - 27,055,453 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	27,033,924 - 27,055,457 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	29,401,270 - 29,422,801 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LMO2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	31,382,437 - 31,416,256 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	31,404,872 - 31,416,883 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	128,481,321 - 128,514,918 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lmo2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624767	13,245,984 - 13,257,440 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624767	13,245,783 - 13,257,322 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Lmo2
125 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	87
Count of miRNA genes:	64
Interacting mature miRNAs:	82
Transcripts:	ENSRNOT00000012625
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	29463235	118376539	Rat
631649	Bp123	Blood pressure QTL 123	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	89772419	134772419	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	59242096	157323038	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	61017749	121056321	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	38192233	133483320	Rat
1300178	Hrtrt4	Heart rate QTL 4	3.74		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	43827364	90905114	Rat
1354597	Kidm13	Kidney mass QTL 13	2.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	3	41874578	104104347	Rat
1358186	Ept2	Estrogen-induced pituitary tumorigenesis QTL 2	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	47233430	110362260	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	43827364	169034231	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	43827364	121056321	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	78196190	146592722	Rat
1581568	Rf53	Renal function QTL 53			urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	3	56395968	161299569	Rat
1600376	Arunc5	Aerobic running capacity QTL 5		0.21	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	3	73376539	118376539	Rat
61419	Cia11	Collagen induced arthritis QTL 11	5.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	3	30356773	98535386	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	31172320	163586636	Rat
2290452	Scl56	Serum cholesterol level QTL 56	2.26		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	3	1	91609953	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	47233211	147415807	Rat
2292613	Ept16	Estrogen-induced pituitary tumorigenesis QTL 16	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	47233430	110362260	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	50437504	115638231	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	41874578	155617519	Rat
631665	Bw8	Body weight QTL 8	5.5		body mass (VT:0001259)	body weight (CMO:0000012)	3	50437042	119183768	Rat
1582239	Epfw1	Epididymal fat weight QTL 1	4.5	0.0006	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	53184593	115665732	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	41874578	155617519	Rat
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	70653097	121056321	Rat
2302273	Gluco35	Glucose level QTL 35	5.3	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	80800231	114297550	Rat
731180	Bp152	Blood pressure QTL 152		0.03	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	53781112	91609953	Rat
731180	Bp152	Blood pressure QTL 152		0.03	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	3	53781112	91609953	Rat
731180	Bp152	Blood pressure QTL 152		0.03	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	53781112	91609953	Rat
1582238	Bw68	Body weight QTL 68	3.2	0.0064	body mass (VT:0001259)	body weight (CMO:0000012)	3	53184593	115665732	Rat
1354604	Bw36	Body weight QTL 36	2.9		body mass (VT:0001259)	body weight (CMO:0000012)	3	33703347	104104347	Rat
1582218	Bw74	Body weight QTL 74	3.9	0.0021	body mass (VT:0001259)	body weight (CMO:0000012)	3	53184593	115665732	Rat
1582221	Kidm30	Kidney mass QTL 30	3.5	0.0008	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	3	64655305	115665732	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	70348525	121056321	Rat
1582210	Bw71	Body weight QTL 71	3.3	0.0012	body mass (VT:0001259)	body weight (CMO:0000012)	3	64655305	115665732	Rat

Markers in Region

AU048719

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	90,361,331 - 90,361,532 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	93,915,254 - 93,915,454	NCBI	Rnor6.0
Rnor_5.0	3	100,555,405 - 100,555,605	UniSTS	Rnor5.0
RGSC_v3.4	3	89,351,006 - 89,351,206	UniSTS	RGSC3.4
Celera	3	89,422,775 - 89,422,975	UniSTS
Cytogenetic Map	3	q32	UniSTS

PMC309712P1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	90,372,362 - 90,372,546 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	93,926,281 - 93,926,464	NCBI	Rnor6.0
Rnor_5.0	3	100,566,432 - 100,566,615	UniSTS	Rnor5.0
RGSC_v3.4	3	89,362,034 - 89,362,217	UniSTS	RGSC3.4
Celera	3	89,433,805 - 89,433,988	UniSTS
Cytogenetic Map	3	q32	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2	34	27	22	15	22			66	27	37	11
Low	1	9	30	19	4	19	8	11	8	8	4		8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001037358	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001244779	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001244780	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001244781	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC105772	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK476274	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CO559731	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DY319476	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ230917	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000012625 ⟹ ENSRNOP00000012625

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	90,366,528 - 90,377,953 (+)	Ensembl
Rnor_6.0 Ensembl	3	93,920,447 - 93,931,871 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000083527 ⟹ ENSRNOP00000075577

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	90,371,634 - 90,377,953 (+)	Ensembl
Rnor_6.0 Ensembl	3	93,920,013 - 93,931,871 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000090365 ⟹ ENSRNOP00000072744

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	90,365,883 - 90,377,953 (+)	Ensembl
Rnor_6.0 Ensembl	3	93,909,156 - 93,931,871 (+)	Ensembl

RefSeq Acc Id:

NM_001037358 ⟹ NP_001032435

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	110,821,453 - 110,832,895 (+)	NCBI
mRatBN7.2	3	90,366,528 - 90,377,970 (+)	NCBI
Rnor_6.0	3	93,920,447 - 93,931,888 (+)	NCBI
Rnor_5.0	3	100,549,307 - 100,572,039 (+)	NCBI
RGSC_v3.4	3	89,356,199 - 89,367,641 (+)	RGD
Celera	3	89,427,970 - 89,439,412 (+)	NCBI

Sequence:

show sequence

GGGAAGCTGAGCGAAAATAGACCTTCGCGAGAGAGGAGGGAGCCCCGGGAGAGCCGCGCGGTCC
GCTCCCCGCCCCCAGGCCGCCGCCCCCTCTCTGCCCTCGGCGCCCCGACCCCAGCGAAGGTGCG
AGGGGTTCGGGGCGGCCGGGCGGAGCCGGCGACTGCGCGCGATCGGGACCGGGCGGCGGCGGCG
GCGGCTGTGGTGACGGCAGCGGGACCGGGATGGAAGGGAGCGCGGTGACTGTCCTTGAGCGTGG
AGGGGCGAGCTCGCCGGCCGAGCGACCGAGCAAGAGGAGGCGCAGGAGCGGCGGCGCCCGAGCA
CCCGAGGGGGTCCGAGTCCAGGCAGCTAGCCAGCCACGCGCCACAAAGGGAGCGCCCCCGCCGC
CCGGCACGCCTCCCCCCTCCCCAATGTCCTCGGCCATCGAAAGGAAGAGCCTGGACCCGTCTGA
GGAACCCGTGGATGAGGTGCTGCAGATCCCCCCATCCCTGCTGACATGTGGTGGCTGCCAGCAG
AACATAGGGGACCGCTACTTCCTGAAAGCCATCGACCAGTACTGGCACGAGGATTGCCTCAGCT
GTGACCTCTGTGGGTGTCGGCTGGGAGAGGTGGGCCGGCGCCTCTACTACAAGCTGGGACGGAA
GCTGTGCAGGCGAGACTATCTCAGGCTTTTTGGACAAGATGGCCTCTGTGCTTCCTGTGACAAG
CGGATCCGTGCCTATGAGATGACGATGCGCGTGAAAGACAAAGTGTATCACCTGGAGTGTTTCA
AGTGCGCTGCCTGCCAGAAGCATTTCTGTGTAGGTGACAGATACCTTCTCATCAACTCCGACAT
AGTGTGTGAACAAGACATCTACGAGTGGACCAAGATCAATGGGATCATCTAGGCCAGAGTCCCA
GGCACCTGTGGGGAGGTGTTCAGTGGAGACGCTGGCTCCGCGGTCTTCGGGCTTAGGCACTTTG
GGAACCTGAGGGTGGGTGAGGCATTTCTTAGGAGACTATGGACTCTTCCTGGGCACTAAAGACA
TAGCAATCACATGACATAATGCAGAGGCCGAGGCTTCAGTGATGAAAAGGACCAGCCCTAGGAG
AGAATTTATGGTCACAGGCTAGCTATAGTAACTGACAAGGTTAGTGGAGGAAATCTTTGAGAAC
CAGCATGCCACTGTGCCATCATGATAACATTTCCCAGATAGGCAGTCTTGGGTAAAGATTAGAT
GTGACCTTGGTGTTCATGGACTAGAGTTGTGGAATTAATTTCTTCCTGGCTTTGGTAACTACCC
TGTTCTAGTCACCGTCCTTCACACTAGGAAAGGAAAGAGAGAAGAAATAGTCGCTTTTTTTTTT
TCTTTCTTTTTTTCCTTGGTCATCTTCCCGTGGCCTACAGCTCTGGAGCCAAGGGAAACTGCAT
AGAGGTACATTTCAGTTGGGAATGAAATATACATCTTTCAACCAGACAAATATTTATAGCAGTG
TTGATGAATCACTGTTTTTAGACACCTTCATTTGAGGTGAGGCGCCCCACAGATTGTTTCTATA
CAAATGTAAATCTTAAAAAAAGAAGTCAAAGTTGTTCAACTATTTTATTATCTTAGATTATATC
AAAGTATTTGTTGTGTGTCATTAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001244779 ⟹ NP_001231708

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	110,810,162 - 110,832,895 (+)	NCBI
mRatBN7.2	3	90,355,234 - 90,377,970 (+)	NCBI
Rnor_6.0	3	93,909,156 - 93,931,888 (+)	NCBI
Rnor_5.0	3	100,549,307 - 100,572,039 (+)	NCBI
Celera	3	89,416,677 - 89,439,412 (+)	NCBI

Sequence:

show sequence

AACACCACCACTCACACAAATGCATACTCTTCTCTCCTGACTGCTTAAACTGAGTTCCTGACAT
TTTCTGGAAAGAGGGCATTTCTACCTGGATGTGCAGTGACCTGTGGAGAGGCAGGGAGCGCGGT
GACTGTCCTTGAGCGTGGAGGGGCGAGCTCGCCGGCCGAGCGACCGAGCAAGAGGAGGCGCAGG
AGCGGCGGCGCCCGAGCACCCGAGGGGGTCCGAGTCCAGGCAGCTAGCCAGCCACGCGCCACAA
AGGGAGCGCCCCCGCCGCCCGGCACGCCTCCCCCCTCCCCAATGTCCTCGGCCATCGAAAGGAA
GAGCCTGGACCCGTCTGAGGAACCCGTGGATGAGGTGCTGCAGATCCCCCCATCCCTGCTGACA
TGTGGTGGCTGCCAGCAGAACATAGGGGACCGCTACTTCCTGAAAGCCATCGACCAGTACTGGC
ACGAGGATTGCCTCAGCTGTGACCTCTGTGGGTGTCGGCTGGGAGAGGTGGGCCGGCGCCTCTA
CTACAAGCTGGGACGGAAGCTGTGCAGGCGAGACTATCTCAGGCTTTTTGGACAAGATGGCCTC
TGTGCTTCCTGTGACAAGCGGATCCGTGCCTATGAGATGACGATGCGCGTGAAAGACAAAGTGT
ATCACCTGGAGTGTTTCAAGTGCGCTGCCTGCCAGAAGCATTTCTGTGTAGGTGACAGATACCT
TCTCATCAACTCCGACATAGTGTGTGAACAAGACATCTACGAGTGGACCAAGATCAATGGGATC
ATCTAGGCCAGAGTCCCAGGCACCTGTGGGGAGGTGTTCAGTGGAGACGCTGGCTCCGCGGTCT
TCGGGCTTAGGCACTTTGGGAACCTGAGGGTGGGTGAGGCATTTCTTAGGAGACTATGGACTCT
TCCTGGGCACTAAAGACATAGCAATCACATGACATAATGCAGAGGCCGAGGCTTCAGTGATGAA
AAGGACCAGCCCTAGGAGAGAATTTATGGTCACAGGCTAGCTATAGTAACTGACAAGGTTAGTG
GAGGAAATCTTTGAGAACCAGCATGCCACTGTGCCATCATGATAACATTTCCCAGATAGGCAGT
CTTGGGTAAAGATTAGATGTGACCTTGGTGTTCATGGACTAGAGTTGTGGAATTAATTTCTTCC
TGGCTTTGGTAACTACCCTGTTCTAGTCACCGTCCTTCACACTAGGAAAGGAAAGAGAGAAGAA
ATAGTCGCTTTTTTTTTTTCTTTCTTTTTTTCCTTGGTCATCTTCCCGTGGCCTACAGCTCTGG
AGCCAAGGGAAACTGCATAGAGGTACATTTCAGTTGGGAATGAAATATACATCTTTCAACCAGA
CAAATATTTATAGCAGTGTTGATGAATCACTGTTTTTAGACACCTTCATTTGAGGTGAGGCGCC
CCACAGATTGTTTCTATACAAATGTAAATCTTAAAAAAAGAAGTCAAAGTTGTTCAACTATTTT
ATTATCTTAGATTATATCAAAGTATTTGTTGTGTGTCATTAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001244780 ⟹ NP_001231709

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	110,821,019 - 110,832,895 (+)	NCBI
mRatBN7.2	3	90,366,094 - 90,377,970 (+)	NCBI
Rnor_6.0	3	93,920,013 - 93,931,888 (+)	NCBI
Rnor_5.0	3	100,549,307 - 100,572,039 (+)	NCBI
Celera	3	89,427,536 - 89,439,412 (+)	NCBI

Sequence:

show sequence

CACGACCGTGGTCTTGGGACCTCGAACCCGAGACGAGCGCTCGCTAGCCAGCCACTAGCAACGC
TTGCATTTCTTTCCTGCTGGAACCGCCAGGGAGCGCGGTGACTGTCCTTGAGCGTGGAGGGGCG
AGCTCGCCGGCCGAGCGACCGAGCAAGAGGAGGCGCAGGAGCGGCGGCGCCCGAGCACCCGAGG
GGGTCCGAGTCCAGGCAGCTAGCCAGCCACGCGCCACAAAGGGAGCGCCCCCGCCGCCCGGCAC
GCCTCCCCCCTCCCCAATGTCCTCGGCCATCGAAAGGAAGAGCCTGGACCCGTCTGAGGAACCC
GTGGATGAGGTGCTGCAGATCCCCCCATCCCTGCTGACATGTGGTGGCTGCCAGCAGAACATAG
GGGACCGCTACTTCCTGAAAGCCATCGACCAGTACTGGCACGAGGATTGCCTCAGCTGTGACCT
CTGTGGGTGTCGGCTGGGAGAGGTGGGCCGGCGCCTCTACTACAAGCTGGGACGGAAGCTGTGC
AGGCGAGACTATCTCAGGCTTTTTGGACAAGATGGCCTCTGTGCTTCCTGTGACAAGCGGATCC
GTGCCTATGAGATGACGATGCGCGTGAAAGACAAAGTGTATCACCTGGAGTGTTTCAAGTGCGC
TGCCTGCCAGAAGCATTTCTGTGTAGGTGACAGATACCTTCTCATCAACTCCGACATAGTGTGT
GAACAAGACATCTACGAGTGGACCAAGATCAATGGGATCATCTAGGCCAGAGTCCCAGGCACCT
GTGGGGAGGTGTTCAGTGGAGACGCTGGCTCCGCGGTCTTCGGGCTTAGGCACTTTGGGAACCT
GAGGGTGGGTGAGGCATTTCTTAGGAGACTATGGACTCTTCCTGGGCACTAAAGACATAGCAAT
CACATGACATAATGCAGAGGCCGAGGCTTCAGTGATGAAAAGGACCAGCCCTAGGAGAGAATTT
ATGGTCACAGGCTAGCTATAGTAACTGACAAGGTTAGTGGAGGAAATCTTTGAGAACCAGCATG
CCACTGTGCCATCATGATAACATTTCCCAGATAGGCAGTCTTGGGTAAAGATTAGATGTGACCT
TGGTGTTCATGGACTAGAGTTGTGGAATTAATTTCTTCCTGGCTTTGGTAACTACCCTGTTCTA
GTCACCGTCCTTCACACTAGGAAAGGAAAGAGAGAAGAAATAGTCGCTTTTTTTTTTTCTTTCT
TTTTTTCCTTGGTCATCTTCCCGTGGCCTACAGCTCTGGAGCCAAGGGAAACTGCATAGAGGTA
CATTTCAGTTGGGAATGAAATATACATCTTTCAACCAGACAAATATTTATAGCAGTGTTGATGA
ATCACTGTTTTTAGACACCTTCATTTGAGGTGAGGCGCCCCACAGATTGTTTCTATACAAATGT
AAATCTTAAAAAAAGAAGTCAAAGTTGTTCAACTATTTTATTATCTTAGATTATATCAAAGTAT
TTGTTGTGTGTCATTAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001244781 ⟹ NP_001231710

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	110,821,453 - 110,832,895 (+)	NCBI
mRatBN7.2	3	90,366,528 - 90,377,970 (+)	NCBI
Rnor_6.0	3	93,920,447 - 93,931,888 (+)	NCBI
Rnor_5.0	3	100,549,307 - 100,572,039 (+)	NCBI
Celera	3	89,427,970 - 89,439,412 (+)	NCBI

Sequence:

show sequence

GGGAAGCTGAGCGAAAATAGACCTTCGCGAGAGAGGAGGGAGCCCCGGGAGAGCCGCGCGGTCC
GCTCCCCGCCCCCAGGCCGCCGCCCCCTCTCTGCCCTCGGCGCCCCGACCCCAGCGAAGGGAGC
GCGGTGACTGTCCTTGAGCGTGGAGGGGCGAGCTCGCCGGCCGAGCGACCGAGCAAGAGGAGGC
GCAGGAGCGGCGGCGCCCGAGCACCCGAGGGGGTCCGAGTCCAGGCAGCTAGCCAGCCACGCGC
CACAAAGGGAGCGCCCCCGCCGCCCGGCACGCCTCCCCCCTCCCCAATGTCCTCGGCCATCGAA
AGGAAGAGCCTGGACCCGTCTGAGGAACCCGTGGATGAGGTGCTGCAGATCCCCCCATCCCTGC
TGACATGTGGTGGCTGCCAGCAGAACATAGGGGACCGCTACTTCCTGAAAGCCATCGACCAGTA
CTGGCACGAGGATTGCCTCAGCTGTGACCTCTGTGGGTGTCGGCTGGGAGAGGTGGGCCGGCGC
CTCTACTACAAGCTGGGACGGAAGCTGTGCAGGCGAGACTATCTCAGGCTTTTTGGACAAGATG
GCCTCTGTGCTTCCTGTGACAAGCGGATCCGTGCCTATGAGATGACGATGCGCGTGAAAGACAA
AGTGTATCACCTGGAGTGTTTCAAGTGCGCTGCCTGCCAGAAGCATTTCTGTGTAGGTGACAGA
TACCTTCTCATCAACTCCGACATAGTGTGTGAACAAGACATCTACGAGTGGACCAAGATCAATG
GGATCATCTAGGCCAGAGTCCCAGGCACCTGTGGGGAGGTGTTCAGTGGAGACGCTGGCTCCGC
GGTCTTCGGGCTTAGGCACTTTGGGAACCTGAGGGTGGGTGAGGCATTTCTTAGGAGACTATGG
ACTCTTCCTGGGCACTAAAGACATAGCAATCACATGACATAATGCAGAGGCCGAGGCTTCAGTG
ATGAAAAGGACCAGCCCTAGGAGAGAATTTATGGTCACAGGCTAGCTATAGTAACTGACAAGGT
TAGTGGAGGAAATCTTTGAGAACCAGCATGCCACTGTGCCATCATGATAACATTTCCCAGATAG
GCAGTCTTGGGTAAAGATTAGATGTGACCTTGGTGTTCATGGACTAGAGTTGTGGAATTAATTT
CTTCCTGGCTTTGGTAACTACCCTGTTCTAGTCACCGTCCTTCACACTAGGAAAGGAAAGAGAG
AAGAAATAGTCGCTTTTTTTTTTTCTTTCTTTTTTTCCTTGGTCATCTTCCCGTGGCCTACAGC
TCTGGAGCCAAGGGAAACTGCATAGAGGTACATTTCAGTTGGGAATGAAATATACATCTTTCAA
CCAGACAAATATTTATAGCAGTGTTGATGAATCACTGTTTTTAGACACCTTCATTTGAGGTGAG
GCGCCCCACAGATTGTTTCTATACAAATGTAAATCTTAAAAAAAGAAGTCAAAGTTGTTCAACT
ATTTTATTATCTTAGATTATATCAAAGTATTTGTTGTGTGTCATTAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001032435	(Get FASTA)	NCBI Sequence Viewer
	NP_001231708	(Get FASTA)	NCBI Sequence Viewer
	NP_001231709	(Get FASTA)	NCBI Sequence Viewer
	NP_001231710	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI05773	(Get FASTA)	NCBI Sequence Viewer
	EDL79682	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000012625
	ENSRNOP00000012625.7
	ENSRNOP00000072744.2
	ENSRNOP00000075577.2

RefSeq Acc Id:	NP_001032435 ⟸ NM_001037358
- Peptide Label:	isoform 1
- UniProtKB:	A0A0G2QC60 (UniProtKB/TrEMBL), A0A0G2K3R4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEGSAVTVLERGGASSPAERPSKRRRRSGGARAPEGVRVQAASQPRATKGAPPPPGTPPPSPMS SAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGE VGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFC VGDRYLLINSDIVCEQDIYEWTKINGII hide sequence

RefSeq Acc Id:	NP_001231708 ⟸ NM_001244779
- Peptide Label:	isoform 2
- UniProtKB:	Q3KRD2 (UniProtKB/TrEMBL), F1LNA1 (UniProtKB/TrEMBL), A0A0G2KAY6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRL GEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKH FCVGDRYLLINSDIVCEQDIYEWTKINGII hide sequence

RefSeq Acc Id:	NP_001231709 ⟸ NM_001244780
- Peptide Label:	isoform 2
- UniProtKB:	Q3KRD2 (UniProtKB/TrEMBL), F1LNA1 (UniProtKB/TrEMBL), A0A0G2KAY6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRL GEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKH FCVGDRYLLINSDIVCEQDIYEWTKINGII hide sequence

RefSeq Acc Id:	NP_001231710 ⟸ NM_001244781
- Peptide Label:	isoform 2
- UniProtKB:	Q3KRD2 (UniProtKB/TrEMBL), F1LNA1 (UniProtKB/TrEMBL), A0A0G2KAY6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRL GEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKH FCVGDRYLLINSDIVCEQDIYEWTKINGII hide sequence

RefSeq Acc Id:

ENSRNOP00000012625 ⟸ ENSRNOT00000012625

RefSeq Acc Id:

ENSRNOP00000072744 ⟸ ENSRNOT00000090365

RefSeq Acc Id:

ENSRNOP00000075577 ⟸ ENSRNOT00000083527

Protein Domains

LIM zinc-binding

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2QC60-F1-model_v2	AlphaFold	A0A0G2QC60	1-220	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692256

Promoter ID:

EPDNEW_R2781

Type:

single initiation site

Name:

Lmo2_1

Description:

LIM domain only 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	93,920,539 - 93,920,599	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307101	AgrOrtholog
BioCyc Gene	G2FUF-48551	BioCyc
Ensembl Genes	ENSRNOG00000009401	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000012625	ENTREZGENE
	ENSRNOT00000012625.7	UniProtKB/TrEMBL
	ENSRNOT00000083527.2	UniProtKB/TrEMBL
	ENSRNOT00000090365.2	UniProtKB/TrEMBL
Gene3D-CATH	Cysteine Rich Protein	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7930561	IMAGE-MGC_LOAD
InterPro	Znf_LIM	UniProtKB/TrEMBL
KEGG Report	rno:362176	UniProtKB/TrEMBL
MGC_CLONE	MGC:124678	IMAGE-MGC_LOAD
NCBI Gene	362176	ENTREZGENE
PANTHER	LD11652P	UniProtKB/TrEMBL
	RHOMBOTIN-2	UniProtKB/TrEMBL
Pfam	LIM	UniProtKB/TrEMBL
PhenoGen	Lmo2	PhenoGen
PROSITE	LIM_DOMAIN_1	UniProtKB/TrEMBL
	LIM_DOMAIN_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000009401	RatGTEx
SMART	LIM	UniProtKB/TrEMBL
Superfamily-SCOP	Glucocorticoid receptor-like (DNA-binding domain)	UniProtKB/TrEMBL
UniProt	A0A0G2K3R4	ENTREZGENE, UniProtKB/TrEMBL
	A0A0G2KAY6	ENTREZGENE, UniProtKB/TrEMBL
	A0A0G2QC60	ENTREZGENE, UniProtKB/TrEMBL
	F1LNA1	ENTREZGENE
	Q3KRD2	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	F1LNA1	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-12-06	Lmo2	LIM domain only 2	Lmo2_predicted	LIM domain only 2 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Lmo2_predicted	LIM domain only 2 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD