Tex55 (testis expressed 55) - Rat Genome Database

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Gene: Tex55 (testis expressed 55) Rattus norvegicus
Analyze
Symbol: Tex55
Name: testis expressed 55
RGD ID: 1306995
Description: Predicted to be active in nucleus. Orthologous to human TEX55 (testis expressed 55); INTERACTS WITH bisphenol A; aflatoxin B1 (ortholog); arsane (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC288094; rCG52781-like; RGD1306995; similar to hypothetical protein FLJ32859; testis-specific expressed protein 55; uncharacterized protein C3orf30 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81175,432,861 - 75,449,144 (+)NCBIGRCr8
mRatBN7.21161,927,304 - 61,942,666 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1161,927,327 - 61,946,211 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01164,487,881 - 64,512,042 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1164,488,194 - 64,512,053 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01167,596,591 - 67,622,574 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.11163,759,713 - 63,824,081 (+)NCBI
Celera1161,434,635 - 61,449,761 (+)NCBICelera
Cytogenetic Map11q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19821082  


Genomics

Comparative Map Data
Tex55
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81175,432,861 - 75,449,144 (+)NCBIGRCr8
mRatBN7.21161,927,304 - 61,942,666 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1161,927,327 - 61,946,211 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01164,487,881 - 64,512,042 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1164,488,194 - 64,512,053 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01167,596,591 - 67,622,574 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.11163,759,713 - 63,824,081 (+)NCBI
Celera1161,434,635 - 61,449,761 (+)NCBICelera
Cytogenetic Map11q21NCBI
TEX55
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383119,146,165 - 119,151,456 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3119,146,151 - 119,160,042 (+)EnsemblGRCh38hg38GRCh38
GRCh373118,865,012 - 118,870,303 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363120,347,687 - 120,352,992 (+)NCBINCBI36Build 36hg18NCBI36
Celera3117,273,489 - 117,278,794 (+)NCBICelera
Cytogenetic Map3q13.32NCBI
HuRef3116,240,444 - 116,245,750 (+)NCBIHuRef
CHM1_13118,828,466 - 118,833,771 (+)NCBICHM1_1
T2T-CHM13v2.03121,865,900 - 121,871,191 (+)NCBIT2T-CHM13v2.0
Tex55
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391638,632,566 - 38,649,134 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1638,632,568 - 38,649,111 (-)EnsemblGRCm39 Ensembl
GRCm381638,812,204 - 38,828,772 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1638,812,206 - 38,828,749 (-)EnsemblGRCm38mm10GRCm38
MGSCv371638,812,318 - 38,828,862 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361638,731,537 - 38,748,077 (-)NCBIMGSCv36mm8
Celera1639,222,460 - 39,237,745 (-)NCBICelera
Cytogenetic Map16B4NCBI
cM Map1626.87NCBI
Tex55
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542718,905,578 - 18,929,842 (+)NCBIChiLan1.0ChiLan1.0
TEX55
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22117,118,378 - 117,133,224 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13117,123,156 - 117,137,091 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03116,264,342 - 116,279,168 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13123,176,860 - 123,190,639 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3123,176,860 - 123,182,061 (+)Ensemblpanpan1.1panPan2
TEX55
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13322,841,356 - 22,855,183 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3322,841,431 - 22,855,942 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3322,873,263 - 22,886,884 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03323,079,347 - 23,116,697 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13322,882,466 - 22,896,057 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03322,920,121 - 22,933,722 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03323,487,194 - 23,501,029 (+)NCBIUU_Cfam_GSD_1.0
Tex55
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602131,359,152 - 131,374,214 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365366,147,905 - 6,179,844 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TEX55
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.113141,064,655 - 141,068,736 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213150,329,462 - 150,349,843 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TEX55
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12261,689,845 - 61,707,949 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041104,630,192 - 104,636,297 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tex55
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473129,005,819 - 29,032,699 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tex55
128 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:29
Count of miRNA genes:29
Interacting mature miRNAs:29
Transcripts:ENSRNOT00000030268
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)113123913478851519Rat
70180BpQTLcluster10Blood pressure QTL cluster 103.19arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)113491804179918041Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)114094618882566702Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)114428575982566702Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)114545932375190161Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)115445753486241447Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)115513672982993457Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)115635142486241447Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)115980279482566545Rat
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)115980279482566553Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)116034659086241447Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system integumental system musculoskeletal system nervous system reproductive system respiratory system appendage
High
Medium 7
Low 3
Below cutoff 1 1 2 2 6 4 4 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000030268   ⟹   ENSRNOP00000031664
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1161,927,327 - 61,943,599 (+)Ensembl
Rnor_6.0 Ensembl1164,488,194 - 64,512,053 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000095014   ⟹   ENSRNOP00000088106
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1161,927,327 - 61,946,211 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000115430   ⟹   ENSRNOP00000081973
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1161,927,327 - 61,943,599 (+)Ensembl
RefSeq Acc Id: XM_006248378   ⟹   XP_006248440
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,432,862 - 75,449,144 (+)NCBI
mRatBN7.21161,927,304 - 61,942,666 (+)NCBI
Rnor_6.01164,487,881 - 64,512,042 (+)NCBI
Rnor_5.01167,596,591 - 67,622,574 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598163   ⟹   XP_017453652
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,432,862 - 75,449,144 (+)NCBI
mRatBN7.21161,927,304 - 61,942,666 (+)NCBI
Rnor_6.01164,487,881 - 64,512,042 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039088901   ⟹   XP_038944829
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,432,862 - 75,449,144 (+)NCBI
mRatBN7.21161,927,305 - 61,942,666 (+)NCBI
RefSeq Acc Id: XM_063270863   ⟹   XP_063126933
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,432,861 - 75,437,417 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_006248440   ⟸   XM_006248378
- Peptide Label: isoform X2
- UniProtKB: A6IR52 (UniProtKB/TrEMBL),   A0A8I6GGR1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453652   ⟸   XM_017598163
- Peptide Label: isoform X3
- UniProtKB: A0A8I6GGR1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000031664   ⟸   ENSRNOT00000030268
RefSeq Acc Id: XP_038944829   ⟸   XM_039088901
- Peptide Label: isoform X4
- UniProtKB: A0A8I6GGR1 (UniProtKB/TrEMBL),   F1LW82 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000088106   ⟸   ENSRNOT00000095014
RefSeq Acc Id: ENSRNOP00000081973   ⟸   ENSRNOT00000115430
RefSeq Acc Id: XP_063126933   ⟸   XM_063270863
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZU82 (UniProtKB/TrEMBL),   A6IR53 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LW82-F1-model_v2 AlphaFold F1LW82 1-400 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698176
Promoter ID:EPDNEW_R8684
Type:initiation region
Name:RGD1306995_1
Description:similar to hypothetical protein FLJ32859
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01164,488,201 - 64,488,261EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306995 AgrOrtholog
BioCyc Gene G2FUF-21286 BioCyc
Ensembl Genes ENSRNOG00000042555 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000030268.5 UniProtKB/TrEMBL
  ENSRNOT00000095014.1 UniProtKB/TrEMBL
  ENSRNOT00000115430.1 UniProtKB/TrEMBL
InterPro DUF5582 UniProtKB/TrEMBL
  TEX55_DD UniProtKB/TrEMBL
KEGG Report rno:100362538 UniProtKB/TrEMBL
NCBI Gene Tex55 ENTREZGENE
PANTHER PTHR47110 UniProtKB/TrEMBL
  TESTIS-SPECIFIC EXPRESSED PROTEIN 55 UniProtKB/TrEMBL
Pfam DUF5582 UniProtKB/TrEMBL
PhenoGen Tex55 PhenoGen
RatGTEx ENSRNOG00000042555 RatGTEx
UniProt A0A8I5ZU82 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GGR1 ENTREZGENE, UniProtKB/TrEMBL
  A6IR52 ENTREZGENE, UniProtKB/TrEMBL
  A6IR53 ENTREZGENE, UniProtKB/TrEMBL
  F1LW82 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-01-14 Tex55  testis expressed 55  RGD1306995  similar to hypothetical protein FLJ32859  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-02 RGD1306995  similar to hypothetical protein FLJ32859  LOC100362538  rCG52781-like  Data merged from RGD:2324516 1643240 APPROVED
2010-05-06 LOC100362538  rCG52781-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 RGD1306995  similar to hypothetical protein FLJ32859   RGD1306995_predicted  similar to hypothetical protein FLJ32859 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1306995_predicted  similar to hypothetical protein FLJ32859 (predicted)  LOC288094_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC288094_predicted  similar to hypothetical protein FLJ32859 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL