Dop1b (DOP1 leucine zipper like protein B) - Rat Genome Database

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Gene: Dop1b (DOP1 leucine zipper like protein B) Rattus norvegicus
Analyze
Symbol: Dop1b
Name: DOP1 leucine zipper like protein B
RGD ID: 1306097
Description: Predicted to be involved in cognition and embryonic pattern specification. Predicted to be located in early endosome membrane. Predicted to be active in endosome and trans-Golgi network. Orthologous to human DOP1B (DOP1 leucine zipper like protein B); INTERACTS WITH 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: dopey family member 2; Dopey2; LOC304077; protein dopey-2; RGD1306097; similar to KIAA0933 protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81146,494,058 - 46,595,601 (+)NCBIGRCr8
mRatBN7.21133,024,376 - 33,125,931 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1133,024,411 - 33,125,931 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1141,678,414 - 41,780,592 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01134,349,957 - 34,451,939 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01133,499,925 - 33,601,867 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01133,929,142 - 34,027,447 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1133,925,498 - 34,027,435 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01137,520,386 - 37,617,064 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41133,933,395 - 34,035,609 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11133,988,206 - 34,091,634 (+)NCBI
Celera1135,318,841 - 35,416,033 (-)NCBICelera
Cytogenetic Map11q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19056867   PMID:19199708   PMID:23227193   PMID:23533145  


Genomics

Comparative Map Data
Dop1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81146,494,058 - 46,595,601 (+)NCBIGRCr8
mRatBN7.21133,024,376 - 33,125,931 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1133,024,411 - 33,125,931 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1141,678,414 - 41,780,592 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01134,349,957 - 34,451,939 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01133,499,925 - 33,601,867 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01133,929,142 - 34,027,447 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1133,925,498 - 34,027,435 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01137,520,386 - 37,617,064 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41133,933,395 - 34,035,609 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11133,988,206 - 34,091,634 (+)NCBI
Celera1135,318,841 - 35,416,033 (-)NCBICelera
Cytogenetic Map11q11NCBI
DOP1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382136,156,824 - 36,294,274 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2136,156,782 - 36,294,274 (+)EnsemblGRCh38hg38GRCh38
GRCh372137,529,122 - 37,666,572 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362136,458,709 - 36,588,442 (+)NCBINCBI36Build 36hg18NCBI36
Build 342136,458,708 - 36,588,441NCBI
Celera2122,735,540 - 22,864,978 (+)NCBICelera
Cytogenetic Map21q22.12NCBI
HuRef2123,014,356 - 23,142,359 (+)NCBIHuRef
CHM1_12137,098,621 - 37,228,277 (+)NCBICHM1_1
T2T-CHM13v2.02134,539,677 - 34,676,829 (+)NCBIT2T-CHM13v2.0
Dop1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391693,508,795 - 93,607,476 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1693,508,792 - 93,607,478 (+)EnsemblGRCm39 Ensembl
GRCm381693,711,907 - 93,810,588 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1693,711,904 - 93,810,590 (+)EnsemblGRCm38mm10GRCm38
MGSCv371693,712,152 - 93,810,833 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361693,600,447 - 93,699,128 (+)NCBIMGSCv36mm8
Celera1694,798,377 - 94,898,800 (+)NCBICelera
Cytogenetic Map16C4NCBI
cM Map1654.63NCBI
Dop1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540735,437,765 - 35,517,368 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540735,437,765 - 35,517,861 (+)NCBIChiLan1.0ChiLan1.0
DOP1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22232,277,590 - 32,415,220 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12127,137,537 - 27,275,953 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02122,527,124 - 22,664,287 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12135,886,846 - 36,022,790 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2135,886,846 - 36,022,790 (+)Ensemblpanpan1.1panPan2
DOP1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13131,431,150 - 31,536,424 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3131,430,887 - 31,536,379 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3130,486,683 - 30,597,816 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03130,727,364 - 30,838,644 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3130,727,276 - 30,838,631 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13130,599,632 - 30,704,889 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03130,613,675 - 30,718,913 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03131,104,455 - 31,209,762 (+)NCBIUU_Cfam_GSD_1.0
Dop1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497131,012,827 - 31,116,294 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365006,351,340 - 6,451,622 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365006,351,529 - 6,451,632 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DOP1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13199,848,044 - 199,982,512 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113199,848,022 - 199,982,484 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213209,860,210 - 210,009,503 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DOP1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1280,173,127 - 80,290,958 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl280,173,073 - 80,289,043 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660548,008,958 - 8,130,228 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dop1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474527,197,068 - 27,265,087 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474527,196,417 - 27,292,290 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dop1b
390 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11135331169Rat
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)111647204744285911Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)112952841860324829Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)113123913478851519Rat

Markers in Region
2610510B01Rik  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21133,084,643 - 33,084,899 (+)MAPPERmRatBN7.2
Rnor_6.01133,985,214 - 33,985,469NCBIRnor6.0
Rnor_5.01137,575,945 - 37,576,200UniSTSRnor5.0
RGSC_v3.41133,990,605 - 33,990,860UniSTSRGSC3.4
Celera1135,359,731 - 35,359,986UniSTS
Cytogenetic Map11q11UniSTS
RH144641  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21133,125,682 - 33,125,851 (+)MAPPERmRatBN7.2
Rnor_6.01134,027,199 - 34,027,367NCBIRnor6.0
Rnor_5.01137,616,816 - 37,616,984UniSTSRnor5.0
RGSC_v3.41134,035,361 - 34,035,529UniSTSRGSC3.4
Celera1135,318,921 - 35,319,089UniSTS
RH 3.4 Map11251.8UniSTS
Cytogenetic Map11q11UniSTS
BI290556  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21133,119,702 - 33,119,823 (+)MAPPERmRatBN7.2
Rnor_6.01134,021,219 - 34,021,339NCBIRnor6.0
Rnor_5.01137,610,836 - 37,610,956UniSTSRnor5.0
RGSC_v3.41134,029,381 - 34,029,501UniSTSRGSC3.4
Celera1135,324,949 - 35,325,069UniSTS
Cytogenetic Map11q11UniSTS
BF399299  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21133,035,529 - 33,035,688 (+)MAPPERmRatBN7.2
Rnor_6.01133,936,228 - 33,936,386NCBIRnor6.0
Rnor_5.01137,527,472 - 37,527,630UniSTSRnor5.0
RGSC_v3.41133,940,911 - 33,941,069UniSTSRGSC3.4
Celera1135,408,849 - 35,409,007UniSTS
Cytogenetic Map11q11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 2 10 2 16 2 63 12 33 11
Low 1 41 47 39 3 39 8 11 11 23 8 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000076259
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1133,925,498 - 34,027,435 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000083594   ⟹   ENSRNOP00000070233
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1133,024,411 - 33,125,931 (+)Ensembl
Rnor_6.0 Ensembl1133,929,163 - 34,027,226 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000102351   ⟹   ENSRNOP00000085682
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1133,028,049 - 33,058,810 (+)Ensembl
RefSeq Acc Id: NM_001191660   ⟹   NP_001178589
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81146,494,058 - 46,595,601 (+)NCBI
mRatBN7.21133,024,378 - 33,125,931 (+)NCBI
Rnor_6.01133,929,142 - 34,027,447 (+)NCBI
Rnor_5.01137,520,386 - 37,617,064 (+)NCBI
Celera1135,318,841 - 35,416,033 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039088417   ⟹   XP_038944345
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81146,494,064 - 46,595,593 (+)NCBI
mRatBN7.21133,024,377 - 33,125,931 (+)NCBI
RefSeq Acc Id: XR_005491035
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81146,494,062 - 46,592,172 (+)NCBI
mRatBN7.21133,024,376 - 33,123,152 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001178589 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944345 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL76734 (Get FASTA)   NCBI Sequence Viewer  
  EDL76735 (Get FASTA)   NCBI Sequence Viewer  
  EDL76736 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000070233
  ENSRNOP00000070233.2
  ENSRNOP00000085682.1
Reference Protein Sequences
RefSeq Acc Id: NP_001178589   ⟸   NM_001191660
- UniProtKB: A0A0G2JXD9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000070233   ⟸   ENSRNOT00000083594
RefSeq Acc Id: XP_038944345   ⟸   XM_039088417
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JXD9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000085682   ⟸   ENSRNOT00000102351
Protein Domains
Dopey N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JXD9-F1-model_v2 AlphaFold A0A0G2JXD9 1-2298 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698078
Promoter ID:EPDNEW_R8599
Type:multiple initiation site
Name:Dopey2_1
Description:dopey family member 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01133,925,498 - 33,925,558EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306097 AgrOrtholog
BioCyc Gene G2FUF-21787 BioCyc
Ensembl Genes ENSRNOG00000051204 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000083594 ENTREZGENE
  ENSRNOT00000083594.2 UniProtKB/TrEMBL
  ENSRNOT00000102351.1 UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  DOP1 UniProtKB/TrEMBL
  Dopey_N UniProtKB/TrEMBL
NCBI Gene 304077 ENTREZGENE
PANTHER PROTEIN DOPEY-2 UniProtKB/TrEMBL
  PTHR14042 UniProtKB/TrEMBL
Pfam Dopey_N UniProtKB/TrEMBL
PhenoGen Dop1b PhenoGen
RatGTEx ENSRNOG00000051204 RatGTEx
Superfamily-SCOP ARM repeat UniProtKB/TrEMBL
UniProt A0A0G2JXD9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A0Q0_RAT UniProtKB/TrEMBL
  A6KPZ3_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-07-06 Dop1b  DOP1 leucine zipper like protein B  Dopey2  dopey family member 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Dopey2  dopey family member 2   Dopey2_predicted  dopey family member 2 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Dopey2_predicted  dopey family member 2 (predicted)  RGD1306097_predicted  similar to KIAA0933 protein (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1306097_predicted  similar to KIAA0933 protein (predicted)  LOC304077_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC304077_predicted  similar to KIAA0933 protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL