Snph (syntaphilin) - Rat Genome Database

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Gene: Snph (syntaphilin) Rattus norvegicus
Analyze
Symbol: Snph
Name: syntaphilin
RGD ID: 1305867
Description: Involved in neuron differentiation. Located in mitochondrial membrane and neuronal cell body. Is active in presynaptic membrane. Orthologous to human SNPH (syntaphilin); PARTICIPATES IN mitochondria transport pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: SnphTn(sb-T2/Bart3)2.214Mcwi  
Genetic Models: F344-SnphTn(sb-T2/Bart3)2.214Mcwi
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83160,558,929 - 160,603,636 (-)NCBIGRCr8
mRatBN7.23140,098,540 - 140,139,342 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3140,099,708 - 140,139,453 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3144,003,100 - 144,043,889 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03152,586,880 - 152,627,679 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03150,327,349 - 150,368,095 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03147,102,394 - 147,143,576 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3147,102,394 - 147,143,576 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03153,455,882 - 153,496,985 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43141,921,547 - 141,961,697 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13141,828,784 - 141,869,404 (-)NCBI
Celera3138,857,941 - 138,897,949 (-)NCBICelera
Cytogenetic Map3q41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
neuron differentiation  (IBA,IEA,IEP)

Cellular Component

Molecular Function
protein binding  (IPI,ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phosphorylation of syntaphilin by cAMP-dependent protein kinase modulates its interaction with syntaxin-1 and annuls its inhibitory effect on vesicle exocytosis. Boczan J, etal., J Biol Chem. 2004 Apr 30;279(18):18911-9. Epub 2004 Feb 25.
2. Regional and developmental regulation of syntaphilin expression in the brain: a candidate molecular element of synaptic functional differentiation. Das S, etal., Brain Res Mol Brain Res. 2003 Aug 19;116(1-2):38-49.
3. Syntaphilin binds to dynamin-1 and inhibits dynamin-dependent endocytosis. Das S, etal., J Biol Chem. 2003 Oct 17;278(42):41221-6. Epub 2003 Aug 1.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
6. Syntaphilin: a syntaxin-1 clamp that controls SNARE assembly. Lao G, etal., Neuron. 2000 Jan;25(1):191-201.
7. Regulation of mitochondrial transport in neurons. Lin MY and Sheng ZH, Exp Cell Res. 2015 May 15;334(1):35-44. doi: 10.1016/j.yexcr.2015.01.004. Epub 2015 Jan 19.
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15459722   PMID:18614015   PMID:19641106   PMID:23264731   PMID:28472658   PMID:34193962  


Genomics

Comparative Map Data
Snph
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83160,558,929 - 160,603,636 (-)NCBIGRCr8
mRatBN7.23140,098,540 - 140,139,342 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3140,099,708 - 140,139,453 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3144,003,100 - 144,043,889 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03152,586,880 - 152,627,679 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03150,327,349 - 150,368,095 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03147,102,394 - 147,143,576 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3147,102,394 - 147,143,576 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03153,455,882 - 153,496,985 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43141,921,547 - 141,961,697 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13141,828,784 - 141,869,404 (-)NCBI
Celera3138,857,941 - 138,897,949 (-)NCBICelera
Cytogenetic Map3q41NCBI
SNPH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38201,266,294 - 1,309,327 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl201,266,280 - 1,309,328 (+)EnsemblGRCh38hg38GRCh38
GRCh37201,246,938 - 1,289,971 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36201,194,960 - 1,237,971 (+)NCBINCBI36Build 36hg18NCBI36
Build 34201,194,959 - 1,237,969NCBI
Celera201,343,292 - 1,386,301 (+)NCBICelera
Cytogenetic Map20p13NCBI
HuRef201,198,858 - 1,242,272 (+)NCBIHuRef
CHM1_1201,246,907 - 1,289,645 (+)NCBICHM1_1
T2T-CHM13v2.0201,314,355 - 1,358,530 (+)NCBIT2T-CHM13v2.0
Snph
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392151,432,469 - 151,474,527 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2151,432,469 - 151,474,513 (-)EnsemblGRCm39 Ensembl
GRCm382151,590,549 - 151,632,607 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2151,590,549 - 151,632,593 (-)EnsemblGRCm38mm10GRCm38
MGSCv372151,416,286 - 151,458,269 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362151,281,991 - 151,323,974 (-)NCBIMGSCv36mm8
Celera2157,407,760 - 157,449,646 (-)NCBICelera
Cytogenetic Map2G3NCBI
cM Map274.83NCBI
Snph
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955596488,934 - 532,436 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955596489,174 - 531,226 (+)NCBIChiLan1.0ChiLan1.0
SNPH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2212,302,225 - 2,344,967 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1202,299,054 - 2,341,796 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0201,421,626 - 1,464,372 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1201,189,459 - 1,231,383 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl201,153,384 - 1,231,383 (+)Ensemblpanpan1.1panPan2
SNPH
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12419,696,616 - 19,733,612 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2419,699,792 - 19,771,679 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2419,350,890 - 19,387,894 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02420,387,154 - 20,424,167 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2420,387,160 - 20,462,205 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12419,664,974 - 19,701,961 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02419,772,648 - 19,807,305 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02420,203,599 - 20,238,297 (-)NCBIUU_Cfam_GSD_1.0
Snph
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640168,926,021 - 168,939,390 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648517,357,350 - 17,370,578 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648517,357,389 - 17,370,664 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNPH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1733,986,513 - 34,043,995 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11733,986,511 - 34,028,610 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21738,376,843 - 38,418,892 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SNPH
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1255,255,872 - 55,297,521 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl255,255,847 - 55,268,017 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660871,661,132 - 1,703,004 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snph
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247412,578,398 - 2,624,174 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247412,578,394 - 2,624,177 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Snph
200 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:482
Count of miRNA genes:231
Interacting mature miRNAs:270
Transcripts:ENSRNOT00000012727
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)394856903159898684Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)395735366140735366Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)397084464142084464Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)397551417147415807Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
619618Rf3Renal disease susceptibility QTL 36.50.001urine albumin amount (VT:0002871)urine albumin excretion rate to body weight ratio (CMO:0001270)3107693393152693393Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3112681431157681431Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3118839124163839124Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3120538241165538241Rat
1300173Rf11Renal function QTL 113.38renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)3121056165145956249Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3121056165157309487Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3122438700167438700Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3124122556169034231Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3127162703168026850Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3130193298161695983Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3130656562169034231Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3131635904169034231Rat
2298477Eau4Experimental allergic uveoretinitis QTL 40.0011uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)3137398739169034231Rat
8552952Pigfal13Plasma insulin-like growth factor 1 level QTL 13blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)3138799500169034231Rat
5686842Rf59Renal function QTL 59urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)3140069424146976080Rat

Markers in Region
RH137598  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23140,098,579 - 140,098,725 (+)MAPPERmRatBN7.2
Rnor_6.03147,102,434 - 147,102,579NCBIRnor6.0
Rnor_5.03153,455,922 - 153,456,067UniSTSRnor5.0
RGSC_v3.43141,920,422 - 141,920,567UniSTSRGSC3.4
Celera3138,857,981 - 138,858,126UniSTS
Cytogenetic Map3q41UniSTS


Genetic Models
This gene Snph is modified in the following models/strains:
F344-SnphTn(sb-T2/Bart3)2.214Mcwi    


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 54 5
Low 3 8 11 1 18 20 33 9
Below cutoff 41 45 37 8 37 8 10 2 15 3 2 8

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000012727   ⟹   ENSRNOP00000012727
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3140,099,708 - 140,139,453 (-)Ensembl
Rnor_6.0 Ensembl3147,103,562 - 147,143,576 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000091811   ⟹   ENSRNOP00000074165
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl3147,102,394 - 147,143,576 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000099550   ⟹   ENSRNOP00000082917
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3140,099,708 - 140,138,893 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000100129   ⟹   ENSRNOP00000097133
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3140,099,708 - 140,139,453 (-)Ensembl
RefSeq Acc Id: NM_001106525   ⟹   NP_001099995
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83160,558,929 - 160,599,728 (-)NCBI
mRatBN7.23140,098,540 - 140,139,342 (-)NCBI
Rnor_6.03147,102,394 - 147,143,576 (-)NCBI
Rnor_5.03153,455,882 - 153,496,985 (-)NCBI
RGSC_v3.43141,921,547 - 141,961,697 (-)RGD
Celera3138,857,941 - 138,897,949 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006235226   ⟹   XP_006235288
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83160,558,930 - 160,603,636 (-)NCBI
mRatBN7.23140,098,540 - 140,139,193 (-)NCBI
Rnor_6.03147,103,559 - 147,143,524 (-)NCBI
Rnor_5.03153,455,882 - 153,496,985 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017591590   ⟹   XP_017447079
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83160,558,930 - 160,603,636 (-)NCBI
mRatBN7.23140,098,540 - 140,139,197 (-)NCBI
Rnor_6.03147,103,559 - 147,143,524 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017591595   ⟹   XP_017447084
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83160,558,930 - 160,603,636 (-)NCBI
mRatBN7.23140,098,540 - 140,139,196 (-)NCBI
Rnor_6.03147,103,559 - 147,143,524 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063283359   ⟹   XP_063139429
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83160,558,930 - 160,575,408 (-)NCBI
RefSeq Acc Id: XM_063283360   ⟹   XP_063139430
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83160,558,930 - 160,603,636 (-)NCBI
RefSeq Acc Id: XM_063283361   ⟹   XP_063139431
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83160,558,930 - 160,575,408 (-)NCBI
RefSeq Acc Id: XM_063283362   ⟹   XP_063139432
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83160,558,930 - 160,603,636 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001099995   ⟸   NM_001106525
- UniProtKB: B5DF41 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006235288   ⟸   XM_006235226
- Peptide Label: isoform X4
- UniProtKB: A6KHJ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447084   ⟸   XM_017591595
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZUF6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447079   ⟸   XM_017591590
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZUF6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000012727   ⟸   ENSRNOT00000012727
RefSeq Acc Id: ENSRNOP00000074165   ⟸   ENSRNOT00000091811
RefSeq Acc Id: ENSRNOP00000097133   ⟸   ENSRNOT00000100129
RefSeq Acc Id: ENSRNOP00000082917   ⟸   ENSRNOT00000099550
RefSeq Acc Id: XP_063139432   ⟸   XM_063283362
- Peptide Label: isoform X6
- UniProtKB: A6KHJ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139430   ⟸   XM_063283360
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063139431   ⟸   XM_063283361
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AS45 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139429   ⟸   XM_063283359
- Peptide Label: isoform X2
- UniProtKB: A0A8L2Q5Z5 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B5DF41-F1-model_v2 AlphaFold B5DF41 1-504 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692530
Promoter ID:EPDNEW_R3050
Type:single initiation site
Name:Snph_1
Description:syntaphilin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03147,143,590 - 147,143,650EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305867 AgrOrtholog
BioCyc Gene G2FUF-47309 BioCyc
Ensembl Genes ENSRNOG00000009588 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000012727.6 UniProtKB/TrEMBL
  ENSRNOT00000099550.1 UniProtKB/TrEMBL
  ENSRNOT00000100129.1 UniProtKB/TrEMBL
InterPro Syntaphilin/Syntabulin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:296267 UniProtKB/Swiss-Prot
NCBI Gene 296267 ENTREZGENE
PANTHER MICROTUBULE-ASSOCIATED PROTEIN/SYNTAPHILIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR16208:SF1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Syntaphilin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Snph PhenoGen
RatGTEx ENSRNOG00000009588 RatGTEx
UniProt A0A8I5ZUF6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AS45 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2Q5Z5 ENTREZGENE, UniProtKB/TrEMBL
  A6KHJ3 ENTREZGENE, UniProtKB/TrEMBL
  A6KHJ6 ENTREZGENE, UniProtKB/TrEMBL
  B5DF41 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Snph  syntaphilin   Snph_predicted  syntaphilin (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Snph_predicted  syntaphilin (predicted)      Symbol and Name status set to approved 70820 APPROVED