Ttll2 (tubulin tyrosine ligase like 2) - Rat Genome Database

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Gene: Ttll2 (tubulin tyrosine ligase like 2) Rattus norvegicus
Analyze
Symbol: Ttll2
Name: tubulin tyrosine ligase like 2
RGD ID: 1305200
Description: Predicted to enable tubulin binding activity and tubulin-glutamic acid ligase activity. Predicted to be involved in microtubule cytoskeleton organization. Predicted to be active in cilium. Orthologous to human TTLL2 (tubulin tyrosine ligase like 2); INTERACTS WITH 6-propyl-2-thiouracil; bisphenol A; cefaloridine.
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: LOC292311; probable tubulin polyglutamylase TTLL2; tubulin tyrosine ligase-like family, member 2
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8155,515,931 - 55,524,240 (-)NCBIGRCr8
mRatBN7.2152,967,183 - 52,976,690 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl152,968,408 - 52,976,697 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx153,676,157 - 53,677,935 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0159,661,310 - 59,663,088 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0153,751,770 - 53,753,548 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0153,561,142 - 53,570,118 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl153,561,218 - 53,563,032 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0154,808,839 - 54,817,108 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4147,623,758 - 47,625,536 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1147,626,702 - 47,648,603 (-)NCBI
Celera148,728,742 - 48,730,520 (-)NCBICelera
Cytogenetic Map1q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cilium  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Ttll2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8155,515,931 - 55,524,240 (-)NCBIGRCr8
mRatBN7.2152,967,183 - 52,976,690 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl152,968,408 - 52,976,697 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx153,676,157 - 53,677,935 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0159,661,310 - 59,663,088 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0153,751,770 - 53,753,548 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0153,561,142 - 53,570,118 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl153,561,218 - 53,563,032 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0154,808,839 - 54,817,108 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4147,623,758 - 47,625,536 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1147,626,702 - 47,648,603 (-)NCBI
Celera148,728,742 - 48,730,520 (-)NCBICelera
Cytogenetic Map1q12NCBI
TTLL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386167,325,086 - 167,342,688 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6167,325,071 - 167,359,503 (+)EnsemblGRCh38hg38GRCh38
GRCh376167,738,574 - 167,756,176 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366167,658,564 - 167,676,167 (+)NCBINCBI36Build 36hg18NCBI36
Build 346167,709,002 - 167,743,402NCBI
Celera6168,481,306 - 168,498,910 (+)NCBICelera
Cytogenetic Map6q27NCBI
HuRef6165,211,219 - 165,228,833 (+)NCBIHuRef
CHM1_16168,000,728 - 168,018,356 (+)NCBICHM1_1
T2T-CHM13v2.06168,707,721 - 168,725,329 (+)NCBIT2T-CHM13v2.0
Ttll2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39177,618,026 - 7,631,434 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl177,618,284 - 7,620,095 (-)EnsemblGRCm39 Ensembl
GRCm38177,350,627 - 7,364,035 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl177,350,885 - 7,352,696 (-)EnsemblGRCm38mm10GRCm38
MGSCv37177,555,253 - 7,557,045 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361713,289,514 - 13,295,616 (-)NCBIMGSCv36mm8
Cytogenetic Map17A1NCBI
cM Map174.72NCBI
TTLL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25187,554,880 - 187,595,087 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16185,448,900 - 185,463,088 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06165,128,579 - 165,149,294 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16170,299,415 - 170,309,703 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6170,289,455 - 170,302,447 (+)Ensemblpanpan1.1panPan2
TTLL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1155,036,278 - 55,045,578 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl155,034,710 - 55,045,150 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha155,825,855 - 55,827,910 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0155,217,169 - 55,218,963 (-)NCBIROS_Cfam_1.0
UNSW_CanFamBas_1.0154,962,820 - 54,964,875 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0155,587,784 - 55,589,839 (-)NCBIUU_Cfam_GSD_1.0
Ttll2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946149,491,002 - 149,493,483 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493648916,743,277 - 16,745,476 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TTLL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.111,974,295 - 1,977,836 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TTLL2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11395,178,259 - 95,192,863 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1395,178,692 - 95,192,650 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604067,017,549 - 67,031,752 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ttll2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478512,099,413 - 12,100,889 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ttll2
75 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:92
Count of miRNA genes:77
Interacting mature miRNAs:85
Transcripts:ENSRNOT00000044831
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
631508Sald1Serum aldosterone level QTL 13.7blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)1985600154856001Rat
2302038Pia31Pristane induced arthritis QTL 315.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)11099206555992065Rat
1300167Hrtrt2Heart rate QTL 24.35heart pumping trait (VT:2000009)heart rate (CMO:0000002)11148131275088344Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11148131282174945Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11148131282174945Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11148131282174945Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)11183518156835181Rat
634353Rends2Renal damage susceptibility QTL 20.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)11933357156983283Rat
724520Bp145Blood pressure QTL 1452.10.0024arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12078482865784828Rat
1357400Bw62Body weight QTL624.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)12234064767340647Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)12887978078430678Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13273727390665040Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)13344984878449848Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)13344984878449848Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)13483685879836858Rat
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)13523959878430678Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)13523959878430678Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)143284731118944897Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14333300288333002Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14580314078430678Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14936146582174945Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

circulatory system endocrine system exocrine system hepatobiliary system nervous system reproductive system respiratory system
High
Medium 7
Low 5 11
Below cutoff 1 10 10 10 26 8

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000044831   ⟹   ENSRNOP00000043132
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl152,968,408 - 52,976,697 (-)Ensembl
Rnor_6.0 Ensembl153,561,218 - 53,563,032 (-)Ensembl
RefSeq Acc Id: NM_001169136   ⟹   NP_001162607
RefSeq Status: INFERRED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8155,515,955 - 55,517,733 (-)NCBI
mRatBN7.2152,968,428 - 52,970,206 (-)NCBI
Rnor_6.0153,561,232 - 53,563,010 (-)NCBI
Rnor_5.0154,808,839 - 54,817,108 (-)NCBI
RGSC_v3.4147,623,758 - 47,625,536 (-)RGD
Celera148,728,742 - 48,730,520 (-)RGD
Sequence:
RefSeq Acc Id: XM_006227919   ⟹   XP_006227981
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8155,515,931 - 55,524,240 (-)NCBI
mRatBN7.2152,967,183 - 52,976,690 (-)NCBI
Rnor_6.0153,561,142 - 53,570,118 (-)NCBI
Rnor_5.0154,808,839 - 54,817,108 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008758751   ⟹   XP_008756973
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8155,515,931 - 55,524,231 (-)NCBI
mRatBN7.2152,967,183 - 52,976,682 (-)NCBI
Rnor_6.0153,561,142 - 53,570,118 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001162607 (Get FASTA)   NCBI Sequence Viewer  
  XP_006227981 (Get FASTA)   NCBI Sequence Viewer  
  XP_008756973 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000043132
  ENSRNOP00000043132.4
Reference Protein Sequences
RefSeq Acc Id: NP_001162607   ⟸   NM_001169136
- Sequence:
RefSeq Acc Id: XP_006227981   ⟸   XM_006227919
- Peptide Label: isoform X1
- UniProtKB: D3ZF82 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008756973   ⟸   XM_008758751
- Peptide Label: isoform X1
- UniProtKB: D3ZF82 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000043132   ⟸   ENSRNOT00000044831

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZF82-F1-model_v2 AlphaFold D3ZF82 1-541 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305200 AgrOrtholog
BioCyc Gene G2FUF-61499 BioCyc
Ensembl Genes ENSRNOG00000033901 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000044831.5 UniProtKB/TrEMBL
Gene3D-CATH ATP-grasp fold, B domain UniProtKB/TrEMBL
InterPro Tub_tyr_ligase UniProtKB/TrEMBL
NCBI Gene 292311 ENTREZGENE
PANTHER TUBULIN POLYGLUTAMYLASE UniProtKB/TrEMBL
  TUBULIN POLYGLUTAMYLASE TTLL2-RELATED UniProtKB/TrEMBL
Pfam TTL UniProtKB/TrEMBL
PhenoGen Ttll2 PhenoGen
PROSITE TTL UniProtKB/TrEMBL
RatGTEx ENSRNOG00000033901 RatGTEx
Superfamily-SCOP Glutathione synthetase ATP-binding domain-like UniProtKB/TrEMBL
UniProt D3ZF82 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-25 Ttll2  tubulin tyrosine ligase like 2  Ttll2  tubulin tyrosine ligase-like family, member 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Ttll2  tubulin tyrosine ligase-like family, member 2   Ttll2_predicted  tubulin tyrosine ligase-like family, member 2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Ttll2_predicted  tubulin tyrosine ligase-like family, member 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED