Ifi35 (interferon-induced protein 35) - Rat Genome Database

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Gene: Ifi35 (interferon-induced protein 35) Rattus norvegicus
Analyze
Symbol: Ifi35
Name: interferon-induced protein 35
RGD ID: 1304553
Description: Predicted to enable identical protein binding activity. Predicted to be involved in several processes, including macrophage activation involved in immune response; positive regulation of defense response; and regulation of non-canonical NF-kappaB signal transduction. Predicted to be located in several cellular components, including cytosol; extracellular space; and nuclear lumen. Predicted to be active in nucleus. Orthologous to human IFI35 (interferon induced protein 35); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC287719; MGC108976
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81086,881,270 - 86,889,523 (+)NCBIGRCr8
mRatBN7.21086,381,023 - 86,389,279 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1086,381,010 - 86,389,952 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1091,418,433 - 91,426,447 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01090,893,398 - 90,901,717 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01086,286,702 - 86,295,023 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01089,358,376 - 89,366,628 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1089,358,376 - 89,366,626 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01089,156,392 - 89,164,644 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41090,475,323 - 90,483,575 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11090,489,692 - 90,497,943 (+)NCBI
Celera1085,098,510 - 85,106,762 (+)NCBICelera
Cytogenetic Map10q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
4,4'-sulfonyldiphenol  (ISO)
5-fluorouracil  (ISO)
6alpha-methylprednisolone  (ISO)
all-trans-retinoic acid  (ISO)
aluminium atom  (ISO)
aluminium(0)  (ISO)
aristolochic acid A  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
chlordecone  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
cyclosporin A  (ISO)
dibutyl phthalate  (EXP)
diclofenac  (ISO)
dieldrin  (EXP)
dioxygen  (EXP)
doxorubicin  (ISO)
elemental selenium  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
Genipin  (ISO)
glycidyl methacrylate  (ISO)
isotretinoin  (ISO)
ivermectin  (ISO)
lead diacetate  (ISO)
lipopolysaccharide  (ISO)
methapyrilene  (EXP)
methotrexate  (ISO)
N-ethyl-N-nitrosourea  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
nefazodone  (EXP)
nickel atom  (ISO)
ochratoxin A  (EXP)
paracetamol  (ISO)
pentachlorophenol  (ISO)
perfluorooctanoic acid  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
selenium atom  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium aurothiomalate  (ISO)
sodium dodecyl sulfate  (ISO)
sotorasib  (ISO)
stigmasterol  (ISO)
succimer  (ISO)
tamibarotene  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
tetrachloroethene  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
tofacitinib  (ISO)
trametinib  (ISO)
triclosan  (ISO)
trovafloxacin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
vitamin E  (ISO)
zidovudine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
cytosol  (ISO)
extracellular space  (ISO)
membrane  (ISO)
nucleolus  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8288566   PMID:12477932  


Genomics

Comparative Map Data
Ifi35
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81086,881,270 - 86,889,523 (+)NCBIGRCr8
mRatBN7.21086,381,023 - 86,389,279 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1086,381,010 - 86,389,952 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1091,418,433 - 91,426,447 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01090,893,398 - 90,901,717 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01086,286,702 - 86,295,023 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01089,358,376 - 89,366,628 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1089,358,376 - 89,366,626 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01089,156,392 - 89,164,644 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41090,475,323 - 90,483,575 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11090,489,692 - 90,497,943 (+)NCBI
Celera1085,098,510 - 85,106,762 (+)NCBICelera
Cytogenetic Map10q31NCBI
IFI35
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381743,006,784 - 43,014,456 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1743,006,740 - 43,014,456 (+)EnsemblGRCh38hg38GRCh38
GRCh371741,158,801 - 41,166,473 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361738,412,351 - 38,419,999 (+)NCBINCBI36Build 36hg18NCBI36
Build 341738,412,350 - 38,419,998NCBI
Celera1737,815,041 - 37,822,746 (+)NCBICelera
Cytogenetic Map17q21.31NCBI
HuRef1736,924,506 - 36,932,236 (+)NCBIHuRef
CHM1_11741,394,259 - 41,402,019 (+)NCBICHM1_1
T2T-CHM13v2.01743,864,072 - 43,871,742 (+)NCBIT2T-CHM13v2.0
Ifi35
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911101,339,238 - 101,349,527 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11101,339,233 - 101,349,524 (+)EnsemblGRCm39 Ensembl
GRCm3811101,448,412 - 101,458,701 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11101,448,407 - 101,458,698 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711101,309,726 - 101,320,015 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611101,264,571 - 101,274,552 (+)NCBIMGSCv36mm8
Celera11113,135,844 - 113,146,133 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1165.07NCBI
Ifi35
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545116,790,383 - 16,802,664 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545116,790,998 - 16,798,993 (+)NCBIChiLan1.0ChiLan1.0
IFI35
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21921,977,994 - 21,985,622 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11723,867,276 - 23,874,824 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01714,310,106 - 14,317,648 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11714,539,625 - 14,544,931 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1714,539,625 - 14,544,931 (-)Ensemblpanpan1.1panPan2
IFI35
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1920,050,438 - 20,061,346 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl920,050,438 - 20,061,319 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha919,512,038 - 19,522,948 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0920,768,845 - 20,779,755 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl920,768,851 - 20,779,732 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1919,553,944 - 19,564,859 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0919,820,685 - 19,831,593 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0919,922,745 - 19,933,656 (-)NCBIUU_Cfam_GSD_1.0
Ifi35
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560219,364,845 - 19,367,164 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649017,708,071 - 17,713,492 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649017,707,997 - 17,710,294 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IFI35
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1219,879,387 - 19,890,314 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11219,879,386 - 19,890,330 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21219,991,296 - 20,002,226 (+)NCBISscrofa10.2Sscrofa10.2susScr3
IFI35
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11663,276,493 - 63,284,196 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1663,273,829 - 63,284,283 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607734,063,175 - 34,070,917 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ifi35
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247951,260,476 - 1,262,080 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247951,260,476 - 1,268,015 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ifi35
123 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:74
Count of miRNA genes:66
Interacting mature miRNAs:70
Transcripts:ENSRNOT00000028067
Prediction methods:Microtar, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102242750090627625Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102652195798952741Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040035094102359817Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)14232313287323132Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)14232313287323132Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)14232313287323132Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)14232313287323132Rat
70198BpQTLcluster9Blood pressure QTL cluster 92.94arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)104232313287323132Rat
9589030Epfw9Epididymal fat weight QTL 919.240.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)104444169989441699Rat
7411614Foco18Food consumption QTL 180.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)104444169989441699Rat
8694173Bw149Body weight QTL 1494.380.001body mass (VT:0001259)body weight gain (CMO:0000420)104444169989441699Rat
2300218Hpcl2Hepatic cholesterol level QTL 2liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)104502965095600334Rat
631547Bp87Blood pressure QTL 874.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104736947092369470Rat
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105057470795574707Rat
70364Bp72Blood pressure QTL 72arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105112110096121100Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1051770177107211142Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1051770177107211142Rat
1359017Hrtrt21Heart rate QTL 212.4heart pumping trait (VT:2000009)heart rate (CMO:0000002)105177294096772940Rat
631530Tls3T-lymphoma susceptibility QTL 300.0001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)105177461295600334Rat
631535Cm51Cardiac mass QTL 513heart mass (VT:0007028)calculated heart weight (CMO:0000073)105178628291669536Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1053797385107211142Rat
70164Bw21Body weight QTL 214.360.00005body mass (VT:0001259)body weight (CMO:0000012)105379749498952626Rat
1354608Cm33Cardiac mass QTL 332.8heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)105480929299809292Rat
2312662Slep8Serum leptin concentration QTL 80.05blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1057134272102134272Rat
2312668Scl65Serum cholesterol level QTL 650.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1057134272102134272Rat
2312672Insul15Insulin level QTL 150.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1057134272102134272Rat
1549831Bss6Bone structure and strength QTL 64lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)1057576521102576521Rat
2293698Bss43Bone structure and strength QTL 435.330.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1059209888104209888Rat
2306970Anxrr22Anxiety related response QTL 225.95fear/anxiety-related behavior trait (VT:1000241)number of periods of voluntary immobility (CMO:0001045)106134527698211570Rat
6893336Cm75Cardiac mass QTL 750.10.87heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)106134527699703528Rat
1558643Cm44Cardiac mass QTL 444.80.0000368heart mass (VT:0007028)heart wet weight (CMO:0000069)106134527699703528Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062057807107057807Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062057807107057807Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
1357344Bp249Blood pressure QTL 2490.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)106674365598003205Rat
2317029Aia19Adjuvant induced arthritis QTL 192.98joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1066978955107211142Rat
2317039Aia6Adjuvant induced arthritis QTL 64.31joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)1066978955107211142Rat
10450498Bp384Blood pressure QTL 3840.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1067750049107211142Rat
1642980Bp300Blood pressure QTL 300arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068383129107211142Rat
61396Bp9Blood pressure QTL 94.80.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068420376107211142Rat
2300172Bmd57Bone mineral density QTL 579.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1069738412107211142Rat
2293646Bss25Bone structure and strength QTL 2510.960.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1069738412107211142Rat
2293663Bss33Bone structure and strength QTL 339.340.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1069738412107211142Rat
6893366Bw106Body weight QTL 1060.30.47body mass (VT:0001259)body weight (CMO:0000012)1070199100107211142Rat
70193Mcs7Mammary carcinoma susceptibility QTL 72.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072224939107211142Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1072224939107211142Rat
2306793Ean5Experimental allergic neuritis QTL 54.7nervous system integrity trait (VT:0010566)IFNG-secreting splenocyte count (CMO:0002122)107255241693995749Rat
1358188Ept9Estrogen-induced pituitary tumorigenesis QTL 93.9pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)107345313696120911Rat
2292617Ept18Estrogen-induced pituitary tumorigenesis QTL 183.9pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)107345313696120911Rat
1579919Bp281Blood pressure QTL 2810.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107437208494965338Rat
631537Oia4Oil induced arthritis QTL 4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)107563188787055282Rat
10450495Bp383Blood pressure QTL 3830.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107624608594965338Rat
2292438Bp311Blood pressure QTL 311arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1076246085107211142Rat
1302404Cia27Collagen induced arthritis QTL 272.60.0045joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)1076452683107211142Rat
4889492Pancm2Pancreatic morphology QTL 23.2pancreatic beta cell morphology trait (VT:0005217)ratio of insulin-positive cell area to total area of splenic region of pancreas (CMO:0001814)1076748906107211142Rat
1300107Rf18Renal function QTL 183.41urine output (VT:0003620)timed urine volume (CMO:0000260)107877551698279596Rat
1358915Stresp7Stress response QTL 73.52blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)107889965587307728Rat
631555Bp134Blood pressure QTL 1340.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)108051528791230079Rat
6893357Bw102Body weight QTL 1020.50.36body mass (VT:0001259)body weight (CMO:0000012)1080515287101325465Rat
2303589Bw87Body weight QTL 872body mass (VT:0001259)body weight (CMO:0000012)1081285008107211142Rat
4889948Bss91Bone structure and strength QTL 914tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)108256485692369470Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)1082685200107211142Rat
12880055Am11Aortic mass QTL 110.004aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)108400727295933025Rat
2301398Kidm38Kidney mass QTL 380.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)108400727295933025Rat
2306792Ean4Experimental allergic neuritis QTL 44nervous system integrity trait (VT:0010566)IFNG-secreting splenocyte count (CMO:0002122)108402232193995963Rat
1600367Mcs15Mammary carcinoma susceptibility QTL 154.5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1085565469103884409Rat

Markers in Region
RH135191  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21086,389,021 - 86,389,219 (+)MAPPERmRatBN7.2
Rnor_6.01089,366,371 - 89,366,568NCBIRnor6.0
Rnor_5.01089,164,387 - 89,164,584UniSTSRnor5.0
RGSC_v3.41090,483,318 - 90,483,515UniSTSRGSC3.4
Celera1085,106,505 - 85,106,702UniSTS
RH 3.4 Map10877.1UniSTS
Cytogenetic Map10q32.1UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 14 53 37 19 37 2 29 26 11
Low 29 4 4 4 8 9 74 6 15 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000028067   ⟹   ENSRNOP00000028067
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1086,381,010 - 86,389,503 (+)Ensembl
Rnor_6.0 Ensembl1089,358,376 - 89,366,626 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000101419   ⟹   ENSRNOP00000092407
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1086,381,010 - 86,389,952 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000117498   ⟹   ENSRNOP00000090927
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1086,386,878 - 86,389,503 (+)Ensembl
RefSeq Acc Id: NM_001009625   ⟹   NP_001009625
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81086,881,270 - 86,889,523 (+)NCBI
mRatBN7.21086,381,023 - 86,389,279 (+)NCBI
Rnor_6.01089,358,376 - 89,366,628 (+)NCBI
Rnor_5.01089,156,392 - 89,164,644 (+)NCBI
RGSC_v3.41090,475,323 - 90,483,575 (+)RGD
Celera1085,098,510 - 85,106,762 (+)RGD
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001009625   ⟸   NM_001009625
- UniProtKB: Q5M849 (UniProtKB/TrEMBL),   F7FJL7 (UniProtKB/TrEMBL),   A0A8I6ACU1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000028067   ⟸   ENSRNOT00000028067
RefSeq Acc Id: ENSRNOP00000092407   ⟸   ENSRNOT00000101419
RefSeq Acc Id: ENSRNOP00000090927   ⟸   ENSRNOT00000117498
Protein Domains
NID   Nmi/IFP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5M849-F1-model_v2 AlphaFold Q5M849 1-286 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697761
Promoter ID:EPDNEW_R8286
Type:initiation region
Name:Ifi35_1
Description:interferon-induced protein 35
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01089,358,403 - 89,358,463EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304553 AgrOrtholog
BioCyc Gene G2FUF-23171 BioCyc
Ensembl Genes ENSRNOG00000020678 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000028067 ENTREZGENE
  ENSRNOT00000028067.5 UniProtKB/TrEMBL
  ENSRNOT00000101419.1 UniProtKB/TrEMBL
  ENSRNOT00000117498.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7321956 IMAGE-MGC_LOAD
InterPro Interferon_induced_35kDa_N UniProtKB/TrEMBL
  Nmi/IFP35 UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
KEGG Report rno:287719 UniProtKB/TrEMBL
MGC_CLONE MGC:108976 IMAGE-MGC_LOAD
NCBI Gene 287719 ENTREZGENE
PANTHER INTERFERON-INDUCED PROTEIN 35/NMI N-MYC/STAT INTERACTING PROTEIN UniProtKB/TrEMBL
  PTHR15225:SF1 UniProtKB/TrEMBL
Pfam IFP_35_N UniProtKB/TrEMBL
  NID UniProtKB/TrEMBL
PhenoGen Ifi35 PhenoGen
RatGTEx ENSRNOG00000020678 RatGTEx
UniProt A0A8I6ACU1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AH04_RAT UniProtKB/TrEMBL
  A6HJC6_RAT UniProtKB/TrEMBL
  F7FJL7 ENTREZGENE, UniProtKB/TrEMBL
  Q5M849 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Ifi35  interferon-induced protein 35  Ifi35_predicted  interferon-induced protein 35 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Ifi35_predicted  interferon-induced protein 35 (predicted)      Symbol and Name status set to approved 70820 APPROVED