Slc38a7 (solute carrier family 38, member 7) - Rat Genome Database

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Gene: Slc38a7 (solute carrier family 38, member 7) Rattus norvegicus
Analyze
Symbol: Slc38a7
Name: solute carrier family 38, member 7
RGD ID: 1303268
Description: Predicted to enable L-asparagine:sodium symporter activity and L-glutamine:sodium symporter activity. Predicted to be involved in amino acid transport and sodium ion transport. Predicted to be located in axon; lysosomal membrane; and neuronal cell body. Orthologous to human SLC38A7 (solute carrier family 38 member 7); INTERACTS WITH 1-benzylpiperazine; 3-chloropropane-1,2-diol; acetamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: amino acid transporter; LOC291840; MGC105833; putative sodium-coupled neutral amino acid transporter 7; sodium-coupled neutral amino acid transporter 7; solute carrier family 38 member 7
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8199,215,336 - 9,231,592 (+)NCBIGRCr8
mRatBN7.2199,209,203 - 9,225,472 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl199,209,257 - 9,225,454 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx199,177,964 - 9,192,877 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0199,944,782 - 9,959,695 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0199,231,088 - 9,246,002 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0199,622,594 - 9,638,221 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl199,622,611 - 9,638,222 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0199,607,716 - 9,623,404 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4199,664,603 - 9,681,055 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1199,670,000 - 9,685,871 (+)NCBI
Celera199,107,765 - 9,121,788 (+)NCBICelera
Cytogenetic Map19p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
axon  (ISO,ISS)
lysosomal membrane  (ISO,ISS)
neuronal cell body  (ISO,ISS)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:21511949  


Genomics

Comparative Map Data
Slc38a7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8199,215,336 - 9,231,592 (+)NCBIGRCr8
mRatBN7.2199,209,203 - 9,225,472 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl199,209,257 - 9,225,454 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx199,177,964 - 9,192,877 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0199,944,782 - 9,959,695 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0199,231,088 - 9,246,002 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0199,622,594 - 9,638,221 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl199,622,611 - 9,638,222 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0199,607,716 - 9,623,404 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4199,664,603 - 9,681,055 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1199,670,000 - 9,685,871 (+)NCBI
Celera199,107,765 - 9,121,788 (+)NCBICelera
Cytogenetic Map19p13NCBI
SLC38A7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381658,665,109 - 58,684,770 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1658,665,109 - 58,684,770 (-)EnsemblGRCh38hg38GRCh38
GRCh371658,699,013 - 58,718,674 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361657,257,799 - 57,276,175 (-)NCBINCBI36Build 36hg18NCBI36
Celera1643,199,597 - 43,219,111 (-)NCBICelera
Cytogenetic Map16q21NCBI
HuRef1644,565,692 - 44,584,050 (-)NCBIHuRef
CHM1_11660,107,195 - 60,125,575 (-)NCBICHM1_1
T2T-CHM13v2.01664,457,615 - 64,477,277 (-)NCBIT2T-CHM13v2.0
Slc38a7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39896,562,548 - 96,580,205 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl896,562,548 - 96,580,167 (-)EnsemblGRCm39 Ensembl
GRCm38895,835,920 - 95,853,577 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl895,835,920 - 95,853,539 (-)EnsemblGRCm38mm10GRCm38
MGSCv37898,359,823 - 98,377,391 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36898,725,052 - 98,742,620 (-)NCBIMGSCv36mm8
Celera8100,146,714 - 100,164,200 (-)NCBICelera
Cytogenetic Map8D1NCBI
cM Map847.67NCBI
Slc38a7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543316,086,510 - 16,101,184 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543316,086,747 - 16,100,185 (-)NCBIChiLan1.0ChiLan1.0
SLC38A7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21868,144,012 - 68,168,045 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11674,067,639 - 74,091,676 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01638,949,484 - 38,973,523 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11658,076,825 - 58,098,972 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1658,076,840 - 58,098,897 (-)Ensemblpanpan1.1panPan2
SLC38A7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1257,998,908 - 58,011,288 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl257,999,419 - 58,009,461 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha254,630,120 - 54,642,500 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0258,539,794 - 58,552,185 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl258,539,861 - 58,552,185 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1255,366,877 - 55,379,276 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0256,371,630 - 56,384,019 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0257,269,398 - 57,281,818 (+)NCBIUU_Cfam_GSD_1.0
Slc38a7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934949,158,292 - 49,180,280 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647510,416,557 - 10,430,713 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647510,408,880 - 10,430,689 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC38A7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl620,337,137 - 20,401,684 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1620,387,113 - 20,401,733 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SLC38A7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1544,602,899 - 44,625,094 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl544,601,662 - 44,625,106 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604731,540,351 - 31,564,619 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc38a7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474627,596,125 - 27,611,022 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474627,596,061 - 27,610,214 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc38a7
105 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:85
Count of miRNA genes:73
Interacting mature miRNAs:76
Transcripts:ENSRNOT00000061498
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631678Cm9Cardiac mass QTL 94.270.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)19128982497Rat
631681Cm12Cardiac mass QTL 123.330.00053heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)19128982497Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19136824771Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
7411590Foco7Food consumption QTL 76.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)19124688055Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19136824771Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19136824771Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19136824771Rat
10054132Srcrt9Stress Responsive Cort QTL 92.870.0017blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19127355345Rat
1549847Bss8Bone structure and strength QTL 84lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)19131963836Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 14 23 23 23 1 66 25 30 3
Low 3 29 34 18 19 18 8 10 8 10 11 8 8
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000061498   ⟹   ENSRNOP00000058216
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl199,209,257 - 9,225,454 (+)Ensembl
Rnor_6.0 Ensembl199,622,611 - 9,638,222 (+)Ensembl
RefSeq Acc Id: NM_001003705   ⟹   NP_001003705
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8199,215,378 - 9,230,325 (+)NCBI
mRatBN7.2199,209,261 - 9,224,208 (+)NCBI
Rnor_6.0199,622,636 - 9,636,954 (+)NCBI
Rnor_5.0199,607,716 - 9,623,404 (+)NCBI
RGSC_v3.4199,664,603 - 9,681,055 (+)RGD
Celera199,107,765 - 9,121,788 (+)RGD
Sequence:
RefSeq Acc Id: XM_006255067   ⟹   XP_006255129
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8199,215,336 - 9,231,592 (+)NCBI
mRatBN7.2199,209,203 - 9,225,472 (+)NCBI
Rnor_6.0199,622,594 - 9,638,221 (+)NCBI
Rnor_5.0199,607,716 - 9,623,404 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063277841   ⟹   XP_063133911
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8199,221,674 - 9,231,592 (+)NCBI
RefSeq Acc Id: XM_063277842   ⟹   XP_063133912
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8199,222,160 - 9,231,592 (+)NCBI
RefSeq Acc Id: NP_001003705   ⟸   NM_001003705
- UniProtKB: Q6JWR2 (UniProtKB/Swiss-Prot),   A6JXZ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006255129   ⟸   XM_006255067
- Peptide Label: isoform X1
- UniProtKB: Q6JWR2 (UniProtKB/Swiss-Prot),   A6JXZ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000058216   ⟸   ENSRNOT00000061498
RefSeq Acc Id: XP_063133911   ⟸   XM_063277841
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063133912   ⟸   XM_063277842
- Peptide Label: isoform X3
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6JWR2-F1-model_v2 AlphaFold Q6JWR2 1-463 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700921
Promoter ID:EPDNEW_R11445
Type:multiple initiation site
Name:Slc38a7_1
Description:solute carrier family 38, member 7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0199,622,621 - 9,622,681EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303268 AgrOrtholog
BioCyc Gene G2FUF-6554 BioCyc
Ensembl Genes ENSRNOG00000012007 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000061498.4 UniProtKB/Swiss-Prot
Gene3D-CATH Amino acid/polyamine transporter I UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7109456 IMAGE-MGC_LOAD
InterPro AA_transpt_TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:291840 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:105833 IMAGE-MGC_LOAD
NCBI Gene 291840 ENTREZGENE
PANTHER AMINO ACID TRANSPORTER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SODIUM-COUPLED NEUTRAL AMINO ACID TRANSPORTER 7-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Aa_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slc38a7 PhenoGen
RatGTEx ENSRNOG00000012007 RatGTEx
UniProt A6JXZ0 ENTREZGENE, UniProtKB/TrEMBL
  Q6JWR2 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-04 Slc38a7  solute carrier family 38, member 7  LOC291840  amino acid transporter  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-09-30 LOC291840        Symbol and Name status set to provisional 70820 PROVISIONAL