Samm50 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 7 | 117,197,460 - 117,221,668 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 7 | 115,317,472 - 115,341,682 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 7 | 115,317,404 - 115,341,682 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 7 | 117,065,348 - 117,089,536 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 7 | 119,291,076 - 119,315,264 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 7 | 119,260,536 - 119,284,726 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 7 | 125,058,966 - 125,082,506 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 7 | 125,058,897 - 125,082,505 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 7 | 125,047,478 - 125,071,018 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 7 | 122,176,824 - 122,201,032 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 7 | 122,211,053 - 122,235,261 (+) | NCBI | | | | | Celera | 7 | 111,623,449 - 111,647,630 (+) | NCBI | | Celera | | | Cytogenetic Map | 7 | q34 | NCBI | | | | |
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SAMM50 (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 22 | 43,955,442 - 43,996,529 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 22 | 43,955,442 - 44,010,531 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 22 | 44,351,322 - 44,392,409 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 22 | 42,682,634 - 42,723,745 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 22 | 28,262,860 - 28,304,013 (+) | NCBI | | Celera | | | Cytogenetic Map | 22 | q13.31 | NCBI | | | | | HuRef | 22 | 27,305,853 - 27,346,273 (+) | NCBI | | HuRef | | | CHM1_1 | 22 | 44,309,992 - 44,351,172 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 22 | 44,438,587 - 44,480,322 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Samm50 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 15 | 84,076,441 - 84,100,284 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 15 | 84,076,442 - 84,101,468 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 15 | 84,192,240 - 84,216,083 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 15 | 84,192,241 - 84,217,267 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 15 | 84,022,663 - 84,044,733 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 15 | 84,020,006 - 84,043,843 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 15 | 86,323,153 - 86,345,226 (+) | NCBI | | Celera | | | Cytogenetic Map | 15 | E2 | NCBI | | | | | cM Map | 15 | 39.78 | NCBI | | | | |
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Samm50 (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955413 | 28,901,124 - 28,925,093 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955413 | 28,901,124 - 28,925,093 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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SAMM50 (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 23 | 53,781,582 - 53,825,655 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 22 | 56,476,480 - 56,518,165 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 22 | 24,844,400 - 24,886,056 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 22 | 43,035,981 - 43,076,975 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 22 | 43,035,981 - 43,076,977 (+) | Ensembl | panpan1.1 | | panPan2 | |
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PARVB (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 10 | 21,549,654 - 21,629,771 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 10 | 21,551,998 - 21,640,781 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 10 | 21,492,217 - 21,589,726 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 10 | 22,300,594 - 22,397,773 (-) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 10 | 22,299,169 - 22,397,976 (-) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 10 | 22,019,817 - 22,117,314 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 10 | 22,340,152 - 22,437,648 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 10 | 22,513,879 - 22,611,416 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Samm50 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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HiC_Itri_2 | NW_024404945 | 5,311,710 - 5,337,171 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936718 | 1,642,970 - 1,668,536 (+) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936718 | 1,642,994 - 1,668,458 (+) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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SAMM50 (Sus scrofa - pig) |
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SAMM50 (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChlSab1.1 | 19 | 26,467,319 - 26,509,695 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 19 | 26,467,278 - 26,510,168 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666045 | 98,895,141 - 98,937,561 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Samm50 (Heterocephalus glaber - naked mole-rat) |
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