HPRT1P1 (hypoxanthine phosphoribosyltransferase 1 pseudogene 1) - Rat Genome Database

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Gene: HPRT1P1 (hypoxanthine phosphoribosyltransferase 1 pseudogene 1) Homo sapiens
Analyze
Symbol: HPRT1P1
Name: hypoxanthine phosphoribosyltransferase 1 pseudogene 1
RGD ID: 9854675
HGNC Page HGNC:51622
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: HPRT1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38415,864,738 - 15,865,197 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl415,864,938 - 15,865,940 (-)EnsemblGRCh38hg38GRCh38
GRCh37415,866,361 - 15,866,820 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36415,475,631 - 15,521,649 (-)NCBINCBI36Build 36hg18NCBI36
Celera416,331,200 - 16,331,832 (-)NCBICelera
Cytogenetic Map4p15.32NCBI
HuRef415,216,241 - 15,216,873 (-)NCBIHuRef
CHM1_1415,864,624 - 15,865,256 (-)NCBICHM1_1
T2T-CHM13v2.0415,846,331 - 15,846,790 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:65
Count of miRNA genes:65
Interacting mature miRNAs:65
Transcripts:ENST00000509498
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1
Low 1 1 13 2 1 1 1 24 6 1
Below cutoff 36 64 20 5 52 4 273 151 52 3 322 31 1 76 189 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000509498
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl415,864,938 - 15,865,940 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC HPRT1P1 COSMIC
Ensembl Genes ENSG00000251644 Ensembl
GTEx ENSG00000251644 GTEx
HGNC ID HGNC:51622 ENTREZGENE
Human Proteome Map HPRT1P1 Human Proteome Map
NCBI Gene HPRT1P1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-04-08 HPRT1P1  hypoxanthine phosphoribosyltransferase 1 pseudogene 1  LOC100130067  hypoxanthine phosphoribosyltransferase 1 pseudogene  Symbol and/or name change 5135510 APPROVED
2015-04-08 LOC100130067  hypoxanthine phosphoribosyltransferase 1 pseudogene  HPRT1P1  hypoxanthine phosphoribosyltransferase 1 pseudogene 1  Symbol and/or name change 5135510 APPROVED