CCDC26 (CCDC26 long non-coding RNA) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: CCDC26 (CCDC26 long non-coding RNA) Homo sapiens
Analyze
Symbol: CCDC26
Name: CCDC26 long non-coding RNA
RGD ID: 9743884
HGNC Page HGNC
Description: ASSOCIATED WITH high grade glioma; INTERACTS WITH benzo[a]pyrene
Type: ncrna
RefSeq Status: VALIDATED
Also known as: RAM
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl8128,634,199 - 129,683,770 (-)EnsemblGRCh38hg38GRCh38
GRCh388129,351,694 - 129,680,239 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh378130,363,940 - 130,692,485 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map8q24.21NCBI
CHM1_18130,404,181 - 130,732,728 (-)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11181995   PMID:12477932   PMID:15489334   PMID:16449964   PMID:18243251   PMID:19270707   PMID:19578367   PMID:20462933   PMID:20847058   PMID:21531791   PMID:21920947   PMID:22116548  
PMID:22369735   PMID:23399484   PMID:24870769   PMID:25108383   PMID:25245984   PMID:25416956   PMID:25928165   PMID:26014354   PMID:26505354   PMID:27470572   PMID:28600863   PMID:29264887  
PMID:29467491   PMID:30222365   PMID:30778791   PMID:31391242  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:349
Count of miRNA genes:255
Interacting mature miRNAs:265
Transcripts:ENST00000446592, ENST00000520048, ENST00000523151, ENST00000595333
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NR_130917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_130918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_130919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_130920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC011257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC011652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC013300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC016178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC103718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC070152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG393734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG532915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU186641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MF125226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MF125252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OA989221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OA989222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000446592
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,691 - 129,680,239 (-)Ensembl
RefSeq Acc Id: ENST00000509893
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,467 - 129,241,250 (-)Ensembl
RefSeq Acc Id: ENST00000520048
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,352,429 - 129,574,991 (-)Ensembl
RefSeq Acc Id: ENST00000522667
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,679,135 - 129,683,679 (-)Ensembl
RefSeq Acc Id: ENST00000523151
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,691 - 129,575,016 (-)Ensembl
RefSeq Acc Id: ENST00000625513
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8128,954,760 - 128,966,001 (-)Ensembl
RefSeq Acc Id: ENST00000628064
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8128,952,877 - 128,966,001 (-)Ensembl
RefSeq Acc Id: ENST00000630386
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8128,904,773 - 128,966,001 (-)Ensembl
RefSeq Acc Id: ENST00000642958
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,626,902 - 129,682,095 (-)Ensembl
RefSeq Acc Id: ENST00000643616
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8128,634,199 - 128,966,001 (-)Ensembl
RefSeq Acc Id: ENST00000644194
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8128,991,147 - 129,575,020 (-)Ensembl
RefSeq Acc Id: ENST00000644557
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8128,904,432 - 129,575,020 (-)Ensembl
RefSeq Acc Id: ENST00000645432
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,586,132 - 129,682,087 (-)Ensembl
RefSeq Acc Id: ENST00000646877
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,450 - 129,575,063 (-)Ensembl
RefSeq Acc Id: ENST00000647094
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,628,691 - 129,680,049 (-)Ensembl
RefSeq Acc Id: ENST00000652914
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,369,604 - 129,575,020 (-)Ensembl
RefSeq Acc Id: ENST00000652971
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,693 - 129,575,027 (-)Ensembl
RefSeq Acc Id: ENST00000653363
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,470 - 129,574,772 (-)Ensembl
RefSeq Acc Id: ENST00000653401
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,468 - 129,574,937 (-)Ensembl
RefSeq Acc Id: ENST00000653764
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,467 - 129,575,018 (-)Ensembl
RefSeq Acc Id: ENST00000654421
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,462 - 129,574,761 (-)Ensembl
RefSeq Acc Id: ENST00000654987
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,467 - 129,574,930 (-)Ensembl
RefSeq Acc Id: ENST00000655629
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,468 - 129,575,037 (-)Ensembl
RefSeq Acc Id: ENST00000656242
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,450 - 129,575,063 (-)Ensembl
RefSeq Acc Id: ENST00000656316
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,466 - 129,574,962 (-)Ensembl
RefSeq Acc Id: ENST00000657046
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,464 - 129,575,015 (-)Ensembl
RefSeq Acc Id: ENST00000657069
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,398,535 - 129,575,018 (-)Ensembl
RefSeq Acc Id: ENST00000657251
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,713 - 129,575,018 (-)Ensembl
RefSeq Acc Id: ENST00000657400
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,194 - 129,388,106 (-)Ensembl
RefSeq Acc Id: ENST00000657409
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,459 - 129,575,043 (-)Ensembl
RefSeq Acc Id: ENST00000657647
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,693 - 129,574,997 (-)Ensembl
RefSeq Acc Id: ENST00000658740
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,467 - 129,223,370 (-)Ensembl
RefSeq Acc Id: ENST00000658861
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,693 - 129,548,686 (-)Ensembl
RefSeq Acc Id: ENST00000660109
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,467 - 129,575,010 (-)Ensembl
RefSeq Acc Id: ENST00000660163
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,470 - 129,575,020 (-)Ensembl
RefSeq Acc Id: ENST00000660652
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,693 - 129,574,696 (-)Ensembl
RefSeq Acc Id: ENST00000661447
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,693 - 129,575,020 (-)Ensembl
RefSeq Acc Id: ENST00000662033
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,463 - 129,575,063 (-)Ensembl
RefSeq Acc Id: ENST00000662207
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,467 - 129,575,031 (-)Ensembl
RefSeq Acc Id: ENST00000662317
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,465 - 129,575,018 (-)Ensembl
RefSeq Acc Id: ENST00000662350
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,467 - 129,574,931 (-)Ensembl
RefSeq Acc Id: ENST00000662908
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,467 - 129,575,018 (-)Ensembl
RefSeq Acc Id: ENST00000663066
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,586,552 - 129,683,770 (-)Ensembl
RefSeq Acc Id: ENST00000663521
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,302,123 - 129,574,944 (-)Ensembl
RefSeq Acc Id: ENST00000663572
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,603 - 129,574,750 (-)Ensembl
RefSeq Acc Id: ENST00000663716
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,603 - 129,575,018 (-)Ensembl
RefSeq Acc Id: ENST00000663991
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,693 - 129,548,686 (-)Ensembl
RefSeq Acc Id: ENST00000664043
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,469 - 129,574,924 (-)Ensembl
RefSeq Acc Id: ENST00000664162
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,467 - 129,574,759 (-)Ensembl
RefSeq Acc Id: ENST00000664599
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,468 - 129,574,999 (-)Ensembl
RefSeq Acc Id: ENST00000664632
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,467 - 129,575,015 (-)Ensembl
RefSeq Acc Id: ENST00000664936
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,369,416 - 129,574,985 (-)Ensembl
RefSeq Acc Id: ENST00000665348
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,275,873 - 129,575,018 (-)Ensembl
RefSeq Acc Id: ENST00000665364
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,704 - 129,574,944 (-)Ensembl
RefSeq Acc Id: ENST00000665685
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,467 - 129,575,015 (-)Ensembl
RefSeq Acc Id: ENST00000665935
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,240,355 - 129,241,288 (-)Ensembl
RefSeq Acc Id: ENST00000666088
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,467 - 129,574,942 (-)Ensembl
RefSeq Acc Id: ENST00000666317
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,460 - 129,574,997 (-)Ensembl
RefSeq Acc Id: ENST00000666725
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,467 - 129,573,182 (-)Ensembl
RefSeq Acc Id: ENST00000666849
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,468 - 129,574,687 (-)Ensembl
RefSeq Acc Id: ENST00000666882
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,467 - 129,574,750 (-)Ensembl
RefSeq Acc Id: ENST00000667341
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,691 - 129,575,018 (-)Ensembl
RefSeq Acc Id: ENST00000667643
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,595 - 129,575,114 (-)Ensembl
RefSeq Acc Id: ENST00000667962
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,605 - 129,574,795 (-)Ensembl
RefSeq Acc Id: ENST00000667974
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,463 - 129,574,699 (-)Ensembl
RefSeq Acc Id: ENST00000668446
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,468 - 129,575,018 (-)Ensembl
RefSeq Acc Id: ENST00000668777
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,467 - 129,574,749 (-)Ensembl
RefSeq Acc Id: ENST00000668791
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,603 - 129,575,040 (-)Ensembl
RefSeq Acc Id: ENST00000669617
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,470 - 129,575,018 (-)Ensembl
RefSeq Acc Id: ENST00000669935
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,573,925 - 129,575,015 (-)Ensembl
RefSeq Acc Id: ENST00000669940
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,467 - 129,574,763 (-)Ensembl
RefSeq Acc Id: ENST00000670054
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,465 - 129,575,015 (-)Ensembl
RefSeq Acc Id: ENST00000670148
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,469 - 129,575,018 (-)Ensembl
RefSeq Acc Id: ENST00000670386
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,507 - 129,575,037 (-)Ensembl
RefSeq Acc Id: ENST00000670588
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,369,412 - 129,575,018 (-)Ensembl
RefSeq Acc Id: ENST00000670803
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,463 - 129,574,762 (-)Ensembl
RefSeq Acc Id: ENST00000671311
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,693 - 129,574,786 (-)Ensembl
RefSeq Acc Id: ENST00000671347
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,468 - 129,574,696 (-)Ensembl
RefSeq Acc Id: ENST00000671439
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,018,562 - 129,575,018 (-)Ensembl
RefSeq Acc Id: ENST00000671632
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,693 - 129,574,798 (-)Ensembl
RefSeq Acc Id: NR_130917
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh388129,351,694 - 129,680,239 (-)NCBI
CHM1_18130,404,181 - 130,732,728 (-)NCBI
Sequence:
RefSeq Acc Id: NR_130918
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh388129,351,694 - 129,575,018 (-)NCBI
CHM1_18130,404,181 - 130,627,158 (-)NCBI
Sequence:
RefSeq Acc Id: NR_130919
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh388129,351,694 - 129,575,018 (-)NCBI
CHM1_18130,404,181 - 130,627,158 (-)NCBI
Sequence:
RefSeq Acc Id: NR_130920
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh388129,351,694 - 129,575,018 (-)NCBI
CHM1_18130,404,181 - 130,627,158 (-)NCBI
Sequence:
Promoters
RGD ID:15096265
Promoter ID:EPDNEWNC_H1108
Type:initiation region
Name:CCDC26_1
Description:CCDC26 long non-coding RNA [Source:HGNCSymbol;Acc:HGNC:28416]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh388129,575,015 - 129,575,075EPDNEWNC

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
NC_000008.11:g.129434250A>G single nucleotide variant Lung cancer [RCV000107032] Chr8:129434250 [GRCh38]
Chr8:130446496 [GRCh37]
Chr8:8q24.21
uncertain significance
NC_000008.11:g.129570042C>T single nucleotide variant Lung cancer [RCV000107033] Chr8:129570042 [GRCh38]
Chr8:130582288 [GRCh37]
Chr8:8q24.21
uncertain significance
NC_000008.11:g.129596727T>G single nucleotide variant Lung cancer [RCV000107034] Chr8:129596727 [GRCh38]
Chr8:130608973 [GRCh37]
Chr8:8q24.21
uncertain significance
NC_000008.11:g.129655177C>A single nucleotide variant Lung cancer [RCV000107035] Chr8:129655177 [GRCh38]
Chr8:130667423 [GRCh37]
Chr8:8q24.21
uncertain significance
GRCh38/hg38 8q11.1-24.3(chr8:46031340-139285494)x3 copy number gain See cases [RCV000139539] Chr8:46031340..139285494 [GRCh38]
Chr8:46942962..140297737 [GRCh37]
Chr8:47062127..140366919 [NCBI36]
Chr8:8q11.1-24.3
pathogenic
GRCh38/hg38 8q22.3-24.3(chr8:103306336-145068712)x3 copy number gain See cases [RCV000142810] Chr8:103306336..145068712 [GRCh38]
Chr8:104318564..146294098 [GRCh37]
Chr8:104387740..146264902 [NCBI36]
Chr8:8q22.3-24.3
pathogenic|likely pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:226452-145068712)x3 copy number gain See cases [RCV000142858] Chr8:226452..145068712 [GRCh38]
Chr8:176452..146294098 [GRCh37]
Chr8:166452..146264902 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8q24.13-24.3(chr8:124498498-145068712)x3 copy number gain See cases [RCV000137346] Chr8:124498498..145068712 [GRCh38]
Chr8:125510739..146294098 [GRCh37]
Chr8:125579920..146264902 [NCBI36]
Chr8:8q24.13-24.3
pathogenic
GRCh38/hg38 8q22.1-24.3(chr8:97382873-145070385)x3 copy number gain See cases [RCV000140447] Chr8:97382873..145070385 [GRCh38]
Chr8:98395101..146295771 [GRCh37]
Chr8:98464277..146266575 [NCBI36]
Chr8:8q22.1-24.3
pathogenic
GRCh38/hg38 8q21.2-24.3(chr8:85765999-145070385)x3 copy number gain See cases [RCV000143659] Chr8:85765999..145070385 [GRCh38]
Chr8:86778228..146295771 [GRCh37]
Chr8:86863079..146266575 [NCBI36]
Chr8:8q21.2-24.3
pathogenic
GRCh38/hg38 8q22.3-24.3(chr8:100867343-145070385)x3 copy number gain See cases [RCV000141694] Chr8:100867343..145070385 [GRCh38]
Chr8:101879571..146295771 [GRCh37]
Chr8:101948747..146266575 [NCBI36]
Chr8:8q22.3-24.3
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241530-145054634)x3 copy number gain See cases [RCV000148092] Chr8:241530..145054634 [GRCh38]
Chr8:191530..146280020 [GRCh37]
Chr8:181530..146250824 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8q24.13-24.3(chr8:124514090-145054634)x3 copy number gain See cases [RCV000148117] Chr8:124514090..145054634 [GRCh38]
Chr8:125526331..146280020 [GRCh37]
Chr8:125595512..146250824 [NCBI36]
Chr8:8q24.13-24.3
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:208048-145070385)x3 copy number gain See cases [RCV000141808] Chr8:208048..145070385 [GRCh38]
Chr8:158048..146295771 [GRCh37]
Chr8:148048..146266575 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8q21.3-24.3(chr8:87931152-145068712)x3 copy number gain See cases [RCV000138551] Chr8:87931152..145068712 [GRCh38]
Chr8:88943380..146294098 [GRCh37]
Chr8:89012496..146264902 [NCBI36]
Chr8:8q21.3-24.3
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241605-145054781)x3 copy number gain See cases [RCV000138643] Chr8:241605..145054781 [GRCh38]
Chr8:191605..146280167 [GRCh37]
Chr8:181605..146250971 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8p21.3-q24.3(chr8:21291522-145070385)x3 copy number gain See cases [RCV000142021] Chr8:21291522..145070385 [GRCh38]
Chr8:21149033..146295771 [GRCh37]
Chr8:21193313..146266575 [NCBI36]
Chr8:8p21.3-q24.3
pathogenic
GRCh38/hg38 8q21.13-24.3(chr8:77480050-145068712)x3 copy number gain See cases [RCV000139036] Chr8:77480050..145068712 [GRCh38]
Chr8:78392286..146294098 [GRCh37]
Chr8:78554841..146264902 [NCBI36]
Chr8:8q21.13-24.3
pathogenic
GRCh38/hg38 8q21.13-24.3(chr8:78614077-145054634)x3 copy number gain See cases [RCV000142597] Chr8:78614077..145054634 [GRCh38]
Chr8:79526312..146280020 [GRCh37]
Chr8:79688867..146250824 [NCBI36]
Chr8:8q21.13-24.3
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241530-145054634)x3 copy number gain See cases [RCV000053602] Chr8:241530..145054634 [GRCh38]
Chr8:191530..146280020 [GRCh37]
Chr8:181530..146250824 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8q22.1-24.3(chr8:95606052-145054775)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053677]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053677]|See cases [RCV000053677] Chr8:95606052..145054775 [GRCh38]
Chr8:96618280..146280161 [GRCh37]
Chr8:96687456..146250965 [NCBI36]
Chr8:8q22.1-24.3
pathogenic
GRCh38/hg38 8q24.13-24.3(chr8:124514090-145054634)x3 copy number gain See cases [RCV000053678] Chr8:124514090..145054634 [GRCh38]
Chr8:125526331..146280020 [GRCh37]
Chr8:125595512..146250824 [NCBI36]
Chr8:8q24.13-24.3
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:244417-145054775)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053604]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053604]|See cases [RCV000053604] Chr8:244417..145054775 [GRCh38]
Chr8:194417..146280161 [GRCh37]
Chr8:184417..146250965 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8q24.21-24.23(chr8:126626164-137169427)x1 copy number loss See cases [RCV000054306] Chr8:126626164..137169427 [GRCh38]
Chr8:127638409..138181670 [GRCh37]
Chr8:127707591..138250852 [NCBI36]
Chr8:8q24.21-24.23
pathogenic
GRCh38/hg38 8q21.3-24.23(chr8:86300584-137022587)x3 copy number gain See cases [RCV000135621] Chr8:86300584..137022587 [GRCh38]
Chr8:87312813..138034830 [GRCh37]
Chr8:87381929..138104012 [NCBI36]
Chr8:8q21.3-24.23
pathogenic|likely pathogenic
GRCh38/hg38 8q22.1-24.3(chr8:94682154-145068656)x3 copy number gain See cases [RCV000134353] Chr8:94682154..145068656 [GRCh38]
Chr8:95694382..146294042 [GRCh37]
Chr8:95763558..146264846 [NCBI36]
Chr8:8q22.1-24.3
pathogenic
GRCh38/hg38 8q23.3-24.3(chr8:113580402-145054634)x3 copy number gain See cases [RCV000050638] Chr8:113580402..145054634 [GRCh38]
Chr8:114592631..146280020 [GRCh37]
Chr8:114661807..146250824 [NCBI36]
Chr8:8q23.3-24.3
pathogenic
GRCh38/hg38 8q24.21-24.22(chr8:129176782-134170188)x1 copy number loss See cases [RCV000050751] Chr8:129176782..134170188 [GRCh38]
Chr8:130189028..135182431 [GRCh37]
Chr8:130258210..135251613 [NCBI36]
Chr8:8q24.21-24.22
pathogenic
GRCh38/hg38 8q24.21-24.3(chr8:128220912-145049449)x3 copy number gain See cases [RCV000050830] Chr8:128220912..145049449 [GRCh38]
Chr8:129233158..146274835 [GRCh37]
Chr8:129302340..146245639 [NCBI36]
Chr8:8q24.21-24.3
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241530-145049449)x3 copy number gain See cases [RCV000051206] Chr8:241530..145049449 [GRCh38]
Chr8:191530..146274835 [GRCh37]
Chr8:181530..146245639 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic

Additional Information

Database Acc Id Source(s)
COSMIC CCDC26 COSMIC
Ensembl Genes ENSG00000229140 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000446592 ENTREZGENE
  ENST00000523151 ENTREZGENE
  ENST00000661447 ENTREZGENE
  ENST00000676273 ENTREZGENE
GTEx ENSG00000229140 GTEx
HGNC ID HGNC:28416 ENTREZGENE
Human Proteome Map CCDC26 Human Proteome Map
NCBI Gene CCDC26 ENTREZGENE
OMIM 613040 OMIM
PharmGKB PA142672184 PharmGKB
RNAcentral URS00008120D0 RNACentral
  URS0000812155 RNACentral
  URS00008121AF RNACentral
  URS00008121FF RNACentral
UniProt A0A024R9H7_HUMAN UniProtKB/TrEMBL
  CCD26_HUMAN UniProtKB/Swiss-Prot