CT45A10 (cancer/testis antigen family 45 member A10)

Gene: CT45A10 (cancer/testis antigen family 45 member A10) Homo sapiens

Analyze

Symbol:

CT45A10

Name:

cancer/testis antigen family 45 member A10

Description:

Predicted to be involved in snRNA 3'-end processing. Predicted to localize to the integrator complex.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

Cancer/testis antigen 45-5; Cancer/testis antigen 45A10; Cancer/testis antigen 45A5; cancer/testis antigen family 45 member A-like; Cancer/testis antigen family 45 member A5; cancer/testis antigen family 45, member A10; CT45-5; CT45A5

Orthologs:

No known orthologs.

homologs ...

Allele / Splice:

See ClinVar data

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38 Ensembl	X	135,881,063 - 135,889,086 (-)	Ensembl
GRCh38	X	135,880,752 - 135,893,428 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
Cytogenetic Map	X	q26.3	NCBI
HuRef	X	124,238,963 - 124,245,342 (-)	NCBI		HuRef
CHM1_1	X	134,873,923 - 134,886,649 (-)	NCBI		CHM1_1

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation (Toggle Annotation Detail/Summary View)

Disease Annotations

Gene Ontology Annotations

References - uncurated

Genomics

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	uterine cervix	peripheral nervous system	zone of skin	lymph node	large intestine	blood	breast	mucosa	testis	stomach	brain	cerebral cortex	ovary	uterus	musculature	chordate pharynx	esophagus	rectum	colon	pancreas	tongue	forebrain	placenta	thyroid gland	lung	liver	gall bladder	kidney	prostate gland	adrenal gland	bone marrow	connective tissue	hematopoietic system	cartilage tissue	bone tissue	frontal lobe
High
Medium		1	18	2		12	6	2	2	2	5		4	1			6			1				2	14	7	1	1		1	1	2	4	2	3
Low		2	45	1	1	29	1	1	11	6	9	1	8	1	1				1				1		19	2							7		4
Below cutoff	3	4	59	2	2	61	8	2	2	12	9		12	1	1	1	7	1	5	2	2	6	1	2	24		1	4	1		1	1	14		8	1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences

RefSeq Transcripts	NM_001291527	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001291528	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001291529	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001291530	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC240441	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK292207	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY743713	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC070138	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC144429	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC144430	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC144527	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC144528	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENST00000611668 ⟹ ENSP00000484601

RefSeq Status:

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38 Ensembl	X	135,881,063 - 135,889,086 (-)	Ensembl

RefSeq Acc Id:

ENST00000617981 ⟹ ENSP00000481558

RefSeq Status:

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38 Ensembl	X	135,881,258 - 135,885,352 (-)	Ensembl

RefSeq Acc Id:

NM_001291527 ⟹ NP_001278456

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	X	135,880,752 - 135,888,993 (-)	NCBI
CHM1_1	X	134,873,923 - 134,886,649 (-)	NCBI

Sequence:

show sequence

CTCCCCATGCACATCACTCCCAGGTACCCTAGGGGGCACATTTCCCACAACTCCCAGAGGGCAG
GTTTCTAGAAAGTGCCACCAGTGGGGAGGCGCCACAACTTCACTGCCATTTTGTGAGGTGCCGC
CGTCTCTCCTCCAGCAAGGTCAGGACTTCAGGACTGAAACAATGACCGATAAAACAGAGAAGGT
GGCTGTAGATCCTGAAACTGTGTTTAAACGTCCCAGGGAATGTGACAGTCCTTCGTATCAGAAA
AGGCAGAGGATGGCCCTGTTGGCAAGGAAACAAGGAGCAGGAGACAGCCTTATTGCAGGCTCTG
CCATGTCCAAAGAAAAGAAGCTTATGACAGGACATGCTATTCCACCCAGCCAATTGGATTCTCA
GATTGATGACTTCACTGGTTTCAGCAAAGATGGGATGATGCAGAAACCTGGTAGCAATGCACCT
GTGGGAGGAAACGTTACCAGCAATTTCTCTGGAGATGACCTAGAATGCAGAGGAATAGCCTCCT
CTCCCAAAAGCCAACAAGAAATTAATGCTGATATAAAATGTCAAGTAGTGAAGGAAATCCGATG
CCTTGGACGAAAATATGAAAAAATCTTCGAAATGCTTGAAGGAGTGCAAGGACCTACTGCAGTC
AGGAAACGATTTTTTGAATCCATCATCAAGGAAGCAGCAAGATGTATGAGACGAGACTTTGTTA
AGCACCTTAAGAAGAAACTGAAACGTATGATTTGAGAATACTTGTCCCTGGAGGATTATCACAC
CCCAAATGCATAATCTCGTTAATGATTGAGGAGAGAAAAGGATCAGATTGCTGTTTTCTACAAT
GGAGCAGGATATTGCTGAAGTCTCCTGGCATATGTTACCGAATCAACTGGCCTTCCAGAGGCTA
AGAAATTTCTGTTAGTAAAAGATGTTCTTTTTCCCAAAGCGTTTTATTTGAAAGGATAACTTGT
GTTTTGGTTATTTTGTATTCCCACCTGTGCTGGTAGATATTATTAACCCATTAGGTAAATACTA
TTACAGTCGTGGTTTCTGCAGCAGCTCACACTGATGTAGCTGGCGTTTATAACTACCTTCTTTC
GCTACCCGTTTCGCATTCCCTTTGCCCTGAGATAGCATGTCAGTTGGTCATGATGCTTGGCCTG
GCAAGATGACTCAAACCTTCATTACGGAAGAGTCTGAACCATTAGATATCCTGCCTGGATGGGG
TTGCTGTGATTTTCCATTAACTCTAATCG

hide sequence

RefSeq Acc Id:

NM_001291528 ⟹ NP_001278457

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	X	135,880,752 - 135,888,993 (-)	NCBI
CHM1_1	X	134,873,923 - 134,886,649 (-)	NCBI

Sequence:

show sequence

CTCCCCATGCACATCACTCCCAGGTACCCTAGGGGGCACATTTCCCACAACTCCCAGAGGGCAG
GTTTCTAGAAAGTGCCACCAGTGGGGAGGCGCCACAACTTCACTGCCATTTTGTGAGGTGCCGC
CGTCTCTCCTCCAGCAAGGAAACAATGACCGATAAAACAGAGAAGGTGGCTGTAGATCCTGAAA
CTGTGTTTAAACGTCCCAGGGAATGTGACAGTCCTTCGTATCAGAAAAGGCAGAGGATGGCCCT
GTTGGCAAGGAAACAAGGAGCAGGAGACAGCCTTATTGCAGGCTCTGCCATGTCCAAAGAAAAG
AAGCTTATGACAGGACATGCTATTCCACCCAGCCAATTGGATTCTCAGATTGATGACTTCACTG
GTTTCAGCAAAGATGGGATGATGCAGAAACCTGGTAGCAATGCACCTGTGGGAGGAAACGTTAC
CAGCAATTTCTCTGGAGATGACCTAGAATGCAGAGGAATAGCCTCCTCTCCCAAAAGCCAACAA
GAAATTAATGCTGATATAAAATGTCAAGTAGTGAAGGAAATCCGATGCCTTGGACGAAAATATG
AAAAAATCTTCGAAATGCTTGAAGGAGTGCAAGGACCTACTGCAGTCAGGAAACGATTTTTTGA
ATCCATCATCAAGGAAGCAGCAAGATGTATGAGACGAGACTTTGTTAAGCACCTTAAGAAGAAA
CTGAAACGTATGATTTGAGAATACTTGTCCCTGGAGGATTATCACACCCCAAATGCATAATCTC
GTTAATGATTGAGGAGAGAAAAGGATCAGATTGCTGTTTTCTACAATGGAGCAGGATATTGCTG
AAGTCTCCTGGCATATGTTACCGAATCAACTGGCCTTCCAGAGGCTAAGAAATTTCTGTTAGTA
AAAGATGTTCTTTTTCCCAAAGCGTTTTATTTGAAAGGATAACTTGTGTTTTGGTTATTTTGTA
TTCCCACCTGTGCTGGTAGATATTATTAACCCATTAGGTAAATACTATTACAGTCGTGGTTTCT
GCAGCAGCTCACACTGATGTAGCTGGCGTTTATAACTACCTTCTTTCGCTACCCGTTTCGCATT
CCCTTTGCCCTGAGATAGCATGTCAGTTGGTCATGATGCTTGGCCTGGCAAGATGACTCAAACC
TTCATTACGGAAGAGTCTGAACCATTAGATATCCTGCCTGGATGGGGTTGCTGTGATTTTCCAT
TAACTCTAATCG

hide sequence

RefSeq Acc Id:

NM_001291529 ⟹ NP_001278458

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	X	135,880,752 - 135,893,428 (-)	NCBI
CHM1_1	X	134,873,923 - 134,886,649 (-)	NCBI

Sequence:

show sequence

AAGTTTCTACAAAGTTACAACAGTGGGGAGGCGCCACAACTTCACTGCCATTTTGTGAGGTGCT
GCCGCCCCTCCTCCGGCAAGGAAACAATGACCGATAAAACAGAGAAGGTGGCTGTAGATCCTGA
AACTGTGTTTAAACGTCCCAGGGAATGTGACAGTCCTTCGTATCAGAAAAGGCAGAGGATGGCC
CTGTTGGCAAGGAAACAAGGAGCAGGAGACAGCCTTATTGCAGGCTCTGCCATGTCCAAAGAAA
AGAAGCTTATGACAGGACATGCTATTCCACCCAGCCAATTGGATTCTCAGATTGATGACTTCAC
TGGTTTCAGCAAAGATGGGATGATGCAGAAACCTGGTAGCAATGCACCTGTGGGAGGAAACGTT
ACCAGCAATTTCTCTGGAGATGACCTAGAATGCAGAGGAATAGCCTCCTCTCCCAAAAGCCAAC
AAGAAATTAATGCTGATATAAAATGTCAAGTAGTGAAGGAAATCCGATGCCTTGGACGAAAATA
TGAAAAAATCTTCGAAATGCTTGAAGGAGTGCAAGGACCTACTGCAGTCAGGAAACGATTTTTT
GAATCCATCATCAAGGAAGCAGCAAGATGTATGAGACGAGACTTTGTTAAGCACCTTAAGAAGA
AACTGAAACGTATGATTTGAGAATACTTGTCCCTGGAGGATTATCACACCCCAAATGCATAATC
TCGTTAATGATTGAGGAGAGAAAAGGATCAGATTGCTGTTTTCTACAATGGAGCAGGATATTGC
TGAAGTCTCCTGGCATATGTTACCGAATCAACTGGCCTTCCAGAGGCTAAGAAATTTCTGTTAG
TAAAAGATGTTCTTTTTCCCAAAGCGTTTTATTTGAAAGGATAACTTGTGTTTTGGTTATTTTG
TATTCCCACCTGTGCTGGTAGATATTATTAACCCATTAGGTAAATACTATTACAGTCGTGGTTT
CTGCAGCAGCTCACACTGATGTAGCTGGCGTTTATAACTACCTTCTTTCGCTACCCGTTTCGCA
TTCCCTTTGCCCTGAGATAGCATGTCAGTTGGTCATGATGCTTGGCCTGGCAAGATGACTCAAA
CCTTCATTACGGAAGAGTCTGAACCATTAGATATCCTGCCTGGATGGGGTTGCTGTGATTTTCC
ATTAACTCTAATCG

hide sequence

RefSeq Acc Id:

NM_001291530 ⟹ NP_001278459

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	X	135,880,752 - 135,893,428 (-)	NCBI
CHM1_1	X	134,873,923 - 134,886,649 (-)	NCBI

Sequence:

show sequence

AAGTTTCTACAAAGTTACAACAGTGGGGAGGCGCCACAACTTCACTGCCATTTTGTGAGGTGCT
GCCGCCCCTCCTCCGGCAAGGTCAGGACTTCAGGACTGAAACAATGACCGATAAAACAGAGAAG
GTGGCTGTAGATCCTGAAACTGTGTTTAAACGTCCCAGGGAATGTGACAGTCCTTCGTATCAGA
AAAGGCAGAGGATGGCCCTGTTGGCAAGGAAACAAGGAGCAGGAGACAGCCTTATTGCAGGCTC
TGCCATGTCCAAAGAAAAGAAGCTTATGACAGGACATGCTATTCCACCCAGCCAATTGGATTCT
CAGATTGATGACTTCACTGGTTTCAGCAAAGATGGGATGATGCAGAAACCTGGTAGCAATGCAC
CTGTGGGAGGAAACGTTACCAGCAATTTCTCTGGAGATGACCTAGAATGCAGAGGAATAGCCTC
CTCTCCCAAAAGCCAACAAGAAATTAATGCTGATATAAAATGTCAAGTAGTGAAGGAAATCCGA
TGCCTTGGACGAAAATATGAAAAAATCTTCGAAATGCTTGAAGGAGTGCAAGGACCTACTGCAG
TCAGGAAACGATTTTTTGAATCCATCATCAAGGAAGCAGCAAGATGTATGAGACGAGACTTTGT
TAAGCACCTTAAGAAGAAACTGAAACGTATGATTTGAGAATACTTGTCCCTGGAGGATTATCAC
ACCCCAAATGCATAATCTCGTTAATGATTGAGGAGAGAAAAGGATCAGATTGCTGTTTTCTACA
ATGGAGCAGGATATTGCTGAAGTCTCCTGGCATATGTTACCGAATCAACTGGCCTTCCAGAGGC
TAAGAAATTTCTGTTAGTAAAAGATGTTCTTTTTCCCAAAGCGTTTTATTTGAAAGGATAACTT
GTGTTTTGGTTATTTTGTATTCCCACCTGTGCTGGTAGATATTATTAACCCATTAGGTAAATAC
TATTACAGTCGTGGTTTCTGCAGCAGCTCACACTGATGTAGCTGGCGTTTATAACTACCTTCTT
TCGCTACCCGTTTCGCATTCCCTTTGCCCTGAGATAGCATGTCAGTTGGTCATGATGCTTGGCC
TGGCAAGATGACTCAAACCTTCATTACGGAAGAGTCTGAACCATTAGATATCCTGCCTGGATGG
GGTTGCTGTGATTTTCCATTAACTCTAATCG

hide sequence

Protein Sequences

Promoters

Clinical Variants

Additional Information

External Database Links

Nomenclature History

More on CT45A10
	Alliance Gene
	NCBI Gene
	Ensembl Gene
	JBrowse: hg38
	HGNC Report
	NCBI Genome Data Viewer

RGD Object Information
RGD ID:	9681597
Created:	2014-12-03
Species:	Homo sapiens
Last Modified:	2019-12-25
Status:	ACTIVE

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Annotations - ClinVar