Gm10612 (predicted gene 10612) - Rat Genome Database

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Gene: Gm10612 (predicted gene 10612) Mus musculus
Analyze
Symbol: Gm10612
Name: predicted gene 10612
RGD ID: 9680167
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: ENSMUSG00000074047
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398123,424,598 - 123,426,899 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8123,424,599 - 123,426,899 (+)EnsemblGRCm39 Ensembl
GRCm388122,697,859 - 122,700,160 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8122,697,860 - 122,700,160 (+)EnsemblGRCm38mm10GRCm38
Celera8126,927,461 - 126,933,340 (+)NCBICelera
Cytogenetic Map8E1NCBI
cM Map871.95NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575  


Genomics

Variants

.
Variants in Gm10612
45 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:118
Count of miRNA genes:114
Interacting mature miRNAs:118
Transcripts:ENSMUST00000162198
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871740461124622354Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71740461124622354Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)874126628126826739Mouse
27226796Scvln16_msacral vertebrae length 2, 16 week (mouse)889726628130027694Mouse
1357494Obsty2_mobesity 2 (mouse)Not determined896245241129745061Mouse
12880431Fgf23lq2_mFGF23 serum level QTL 2 (mouse)897626632130127694Mouse
11252141Fdr2_mfat response to dietary restriction 2 (mouse)898390634130127694Mouse
1301481Lith11_mlithogenic gene 11 (mouse)Not determined898563635130127694Mouse
1302105Im1_mImmunoregulatory 1 (mouse)Not determined899828531130127694Mouse
1301080Sluc9_msusceptibility to lung cancer 9 (mouse)Not determined899828531130127694Mouse
4141435Fbtq3_mfemoral bone trait QTL 3 (mouse)Not determined8100965309130127694Mouse
1301316Dntcs1_mdental caries susceptibility 1 (mouse)Not determined8103443553127781786Mouse
11532691Sluc38_msusceptibility to lung cancer 38 (mouse)8105033977130127694Mouse
11532692Sluc38a_msusceptibility to lung cancer 38a (mouse)8105033977130127694Mouse
14746994Manh65_mmandible shape 65 (mouse)8106489629130127694Mouse
10412273Fcd1_mfunctional capillary density 1 (mouse)Not determined8110415083130127694Mouse
10412274Leci1_mleukocyte endothelial cell interactions 1 (mouse)Not determined8110415083130127694Mouse
12904938Edlmmq7_mextensor digitorum longus muscle mass QTL 7 (mouse)8111481497130127694Mouse
12904960Gmmq6_mgastrocnemius muscle mass QTL 6 (mouse)8111481497130127694Mouse
4141546Mrdq3_mmodifier of retinal degeneration QTL 3 (mouse)Not determined114439420126055880Mouse
26884375Skwq2_mskull length QTL 2, 5 week (mouse)8120726739130027694Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000162198
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8123,424,599 - 123,426,899 (+)Ensembl
GRCm38.p6 Ensembl8122,697,860 - 122,700,160 (+)Ensembl
RefSeq Acc Id: NR_166074
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398123,424,598 - 123,426,899 (+)NCBI
GRCm388122,697,859 - 122,700,160 (+)NCBI
Sequence:
Protein Sequences
GenBank Protein BAE34526 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences

Promoters
RGD ID:15093517
Promoter ID:EPDNEWNC_M1435
Type:single initiation site
Name:Gm10612_1
Description:predicted gene 10612 [Source:MGI Symbol;Acc:MGI:3708796]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm388122,697,859 - 122,697,919EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000090174 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000162198 ENTREZGENE
MGD MGI:3708796 ENTREZGENE
NCBI Gene Gm10612 ENTREZGENE
PhenoGen Gm10612 PhenoGen
RNAcentral URS000198119E RNACentral
UniProt Q3TYN6_MOUSE UniProtKB/TrEMBL