Gm24392 (predicted gene, 24392) - Rat Genome Database

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Gene: Gm24392 (predicted gene, 24392) Mus musculus
Analyze
No known orthologs.
Symbol: Gm24392
Name: predicted gene, 24392
RGD ID: 9678209
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
Previously known as: LOC115488392; U6 spliceosomal RNA
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391456,654,223 - 56,654,325 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1456,654,223 - 56,654,325 (+)EnsemblGRCm39 Ensembl
GRCm381456,416,766 - 56,416,868 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1456,416,766 - 56,416,868 (+)EnsemblGRCm38mm10GRCm38
Celera1454,212,814 - 54,215,907 (+)NCBICelera
Cytogenetic Map14C3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Gm24392
4 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:60
Count of miRNA genes:59
Interacting mature miRNAs:60
Transcripts:ENSMUST00000158136
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
13506929Recrq10_mrecombination rate in male meiosis QTL 10 (mouse)142792195761137449Mouse
10043886Cia49_mcollagen induced arthritis QTL 49 (mouse)Not determined142999699463997133Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143033525064335381Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
27226737Metcl12_mmetatarsal-calcaneal length 12, 10 week (mouse)143322195759437449Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
10043887Cia50_mcollagen induced arthritis QTL 50 (mouse)Not determined143743018571430320Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144306584777066045Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
4141484Hcbip1_mhexachlorobenzene induced porphyria 1 (mouse)Not determined4733525059962593Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse
1301489Lbm10_mlean body mass 10 (mouse)Not determined145376129687761529Mouse
12880432Fgf23lq3_mFGF23 serum level QTL 3 (mouse)145393744087937440Mouse
10043889Cia52_mcollagen induced arthritis QTL 52 (mouse)Not determined145608238190082509Mouse
1301562Hwq1_mheart weight quantitative locus 1 (mouse)Not determined145654674590546941Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004938689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CT009601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000158136
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1456,654,223 - 56,654,325 (+)Ensembl
GRCm38.p6 Ensembl1456,416,766 - 56,416,868 (+)Ensembl
RefSeq Acc Id: XR_004938689
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391456,654,223 - 56,654,325 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000088761 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000158136 ENTREZGENE
MGD MGI:5454169 ENTREZGENE
NCBI Gene LOC115488392 ENTREZGENE
PhenoGen Gm24392 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-26 Gm24392  predicted gene, 24392  LOC115488392  U6 spliceosomal RNA  Symbol and/or name change 5135510 APPROVED
2020-06-19 LOC115488392  U6 spliceosomal RNA  Gm24392  predicted gene, 24392  Symbol and/or name change 5135510 APPROVED