Gm15523 (predicted gene 15523) - Rat Genome Database

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Gene: Gm15523 (predicted gene 15523) Mus musculus
Analyze
Symbol: Gm15523
Name: predicted gene 15523
RGD ID: 9673561
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912103,303,132 - 103,315,266 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12103,303,115 - 103,341,814 (+)EnsemblGRCm39 Ensembl
GRCm3812103,336,873 - 103,349,007 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12103,336,906 - 103,348,057 (+)EnsemblGRCm38mm10GRCm38
Celera12104,550,595 - 104,565,688 (+)NCBICelera
Cytogenetic Map12ENCBI
cM Map1252.91NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:24200680   PMID:24316575   PMID:27899360  


Genomics

Variants

.
Variants in Gm15523
427 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:196
Count of miRNA genes:180
Interacting mature miRNAs:195
Transcripts:ENSMUST00000160463
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300883Ath21_matherosclerosis 21 (mouse)Not determined1285961579119961683Mouse
39128213Lwq23_mliver weight QTL 10 (mouse)1280956708113383533Mouse
12910532Nrq10a_mnoise-induced hearing loss resistant QTL 10a (mouse)1292750025120092757Mouse
12910533Nrq10_mnoise-induced hearing loss resistant QTL 10 (mouse)1292750025120092757Mouse
1357463Vtbt14_mvertebral trabecular bone trait 14 (mouse)Not determined1292936097120092757Mouse
12910790Pwgrq7_mpre-weaning growth rate QTL 7 (mouse)1290937367108645308Mouse
1301269Sluc12_msusceptibility to lung cancer 12 (mouse)Not determined1296860337120092757Mouse
4142007Chlq17_mcirculating hormone level QTL 17 (mouse)Not determined1288052874120092757Mouse
25823169Hrsq8_mhost response to SARS QTL 8, log titer (mouse)1281696245108495368Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
11039526Ccc1_mcolitis susceptibility in the Collaborative Cross 1 (mouse)1293528334111028223Mouse
1300545Lifespan3_mlife span 3 (mouse)Not determined1288052874120092757Mouse
4141610Tailaq1_mtail length adjusted QTL 1 (mouse)Not determined80956708113383533Mouse
4141738Tgq23_mtriglyceride QTL 23 (mouse)Not determined72112877106112877Mouse
1301836Heal5_mwound healing/regeneration 5 (mouse)Not determined1289939031120092757Mouse
13524846Ppiq11_mprepulse inhibition QTL 11 (mouse)1282666396116666396Mouse
10412156Nociq3_mnociceptive sensitivity inflammatory QTL 3 (mouse)Not determined1286396075114831653Mouse
1301879Insq10_minsulin QTL 10 (mouse)Not determined1283532075117532224Mouse
13524842Ppiq10a_mprepulse inhibition QTL 10a (mouse)1277512220111512220Mouse
10402491Dipa4_mdrug induced psychomotor activation 4 (mouse)Not determined1291222515120092757Mouse
1301492Dbsty3_mdiabesity 3 (mouse)Not determined1283532075117532224Mouse
4141335W6q10_mweight 6 weeks QTL 10 (mouse)Not determined80956708113383533Mouse
1302138Im6_mimmunoregulatory 6 (mouse)Not determined1296860337120092757Mouse
5491194Mobq3_mmultigenic obesity QTL 3 (mouse)Not determined1289664071120092757Mouse
1301689Skull18_mskull morphology 18 (mouse)Not determined1273887422107887526Mouse
1301308Prdt4_mprion disease incubation time 4 (mouse)Not determined1288308354120092757Mouse
1301922Bbaa6_mB.burgdorferi-associated arthritis 6 (mouse)Not determined1290308268120092757Mouse
25394546Skmw76_mskeletal muscle weight 76, TA (mouse)12102593095106941888Mouse
1302177Dps2_mdelta power in slow-wave sleep 2 (mouse)Not determined1294146064120092757Mouse
1301926Adip6_madiposity 6 (mouse)Not determined1273887422107887526Mouse
10412075Nils1_mneointima lesion size 1 (mouse)Not determined12102024665120092757Mouse
27226793Feml10_mfemur length 10, 5 week (mouse)1268346774113363620Mouse
1300973Abmm_mantibody mediated myocarditis (mouse)Not determined1293264461120092757Mouse
4142401Egq10_mearly growth QTL 10 (mouse)Not determined80956708113383533Mouse
10412192Bbaa27_mB.burgdorferi-associated arthritis 27 (mouse)Not determined1291254220107308393Mouse
13524849Ppiq11a_mprepulse inhibition QTL 11a (mouse)1280989143114989143Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000160463
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12103,303,165 - 103,314,316 (+)Ensembl
GRCm38.p6 Ensembl12103,336,906 - 103,348,057 (+)Ensembl
Ensembl Acc Id: ENSMUST00000356828
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12103,303,115 - 103,337,995 (+)Ensembl
Ensembl Acc Id: ENSMUST00000356829
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12103,329,198 - 103,341,814 (+)Ensembl
Ensembl Acc Id: ENSMUST00000356830
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12103,329,267 - 103,341,814 (+)Ensembl
Ensembl Acc Id: ENSMUST00000356831
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12103,327,265 - 103,338,002 (+)Ensembl
Ensembl Acc Id: ENSMUST00000356832
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12103,329,207 - 103,338,293 (+)Ensembl
Ensembl Acc Id: ENSMUST00000356833
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12103,329,301 - 103,338,291 (+)Ensembl
Ensembl Acc Id: ENSMUST00000356834
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12103,329,267 - 103,338,008 (+)Ensembl
Ensembl Acc Id: ENSMUST00000356835
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12103,329,635 - 103,338,008 (+)Ensembl
Ensembl Acc Id: ENSMUST00000356836
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12103,303,131 - 103,310,909 (+)Ensembl
Ensembl Acc Id: ENSMUST00000356837
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12103,333,718 - 103,336,333 (+)Ensembl
RefSeq Acc Id: NR_166806
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912103,303,132 - 103,315,266 (+)NCBI
GRCm3812103,336,873 - 103,349,007 (+)NCBI
Sequence:
RefSeq Acc Id: NR_166807
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912103,303,132 - 103,315,266 (+)NCBI
GRCm3812103,336,873 - 103,349,007 (+)NCBI
Sequence:
Promoters
RGD ID:15094185
Promoter ID:EPDNEWNC_M2088
Type:multiple initiation site
Name:Gm15523_1
Description:predicted gene 15523 [Source:MGI Symbol;Acc:MGI:3782970]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3812103,336,873 - 103,336,933EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000090185 Ensembl
MGD MGI:3782970 ENTREZGENE
NCBI Gene Gm15523 ENTREZGENE
PhenoGen Gm15523 PhenoGen
RNAcentral URS0001980F35 RNACentral
  URS00019812B8 RNACentral