Gm30172 (predicted gene, 30172) - Rat Genome Database

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Gene: Gm30172 (predicted gene, 30172) Mus musculus
Analyze
Symbol: Gm30172
Name: predicted gene, 30172
RGD ID: 9672302
MGI Page MGI
Description: ASSOCIATED WITH Breast Cancer, Familial (ortholog); ectodermal dysplasia 13 (ortholog); genetic disease (ortholog); INTERACTS WITH benzo[a]pyrene (ortholog); butanal (ortholog); clothianidin (ortholog)
Type: pseudo
RefSeq Status: INFERRED
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39115,225,262 - 5,225,571 (+)NCBIGRCm39GRCm39mm39
GRCm38115,275,262 - 5,275,571 (+)NCBIGRCm38GRCm38mm10GRCm38
Celera115,773,634 - 5,775,639 (+)NCBICelera
Cytogenetic Map11A1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
benzo[a]pyrene  (ISO)
butanal  (ISO)
clothianidin  (ISO)
coumarin  (ISO)
pentanal  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:14610273  


Genomics

Comparative Map Data
Gm30172
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39115,225,262 - 5,225,571 (+)NCBIGRCm39GRCm39mm39
GRCm38115,275,262 - 5,275,571 (+)NCBIGRCm38GRCm38mm10GRCm38
Celera115,773,634 - 5,775,639 (+)NCBICelera
Cytogenetic Map11A1NCBI
C22orf31
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382229,058,672 - 29,073,943 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2229,058,672 - 29,061,831 (-)EnsemblGRCh38hg38GRCh38
GRCh372229,454,660 - 29,469,931 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362227,784,660 - 27,787,907 (-)NCBINCBI36Build 36hg18NCBI36
Celera2213,254,591 - 13,257,838 (-)NCBICelera
Cytogenetic Map22q12.1NCBI
HuRef2212,418,994 - 12,422,240 (-)NCBIHuRef
CHM1_12229,413,857 - 29,417,104 (-)NCBICHM1_1
T2T-CHM13v2.02229,519,948 - 29,535,171 (-)NCBIT2T-CHM13v2.0
C14H22orf31
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81484,373,414 - 84,374,948 (+)NCBIGRCr8
CUNH22orf31
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554553,290,397 - 3,302,619 (-)NCBIChiLan1.0ChiLan1.0
C23H22orf31
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22339,042,834 - 39,058,374 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12241,742,359 - 41,757,894 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02210,114,034 - 10,129,561 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12227,813,912 - 27,817,168 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2227,813,912 - 27,817,168 (-)Ensemblpanpan1.1panPan2
C26H22orf31
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12622,398,094 - 22,400,780 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2622,398,094 - 22,409,577 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2622,269,305 - 22,272,835 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02622,771,887 - 22,775,419 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2622,772,638 - 22,775,214 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12622,480,957 - 22,484,485 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02622,745,039 - 22,748,563 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02622,808,543 - 22,812,074 (-)NCBIUU_Cfam_GSD_1.0
CUNH22orf31
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118112,744,005 - 112,746,917 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366573,123,862 - 3,126,702 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C14H22orf31
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11446,242,376 - 46,254,129 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CUNH22orf31
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11911,928,984 - 11,933,733 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1911,929,054 - 11,931,202 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045114,219,222 - 114,221,635 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH22orf31
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247475,367,946 - 5,377,997 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gm30172
7 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357722Vtbt11_mvertebral trabecular bone trait 11 (mouse)Not determined11123880487Mouse
1300768Tshp9_mtooth shape 9 (mouse)Not determined11125976374Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11125976374Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11125976374Mouse
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27095914Pglq16_mpelvic girdle length QTL 16, 16 week (mouse)11325000018150000Mouse
27095919Pglq10_mpelvic girdle length QTL 10, 10 week (mouse)11325000018450000Mouse
27095925Pglq5_mpelvic girdle length QTL 5, 5 week (mouse)11325000019750000Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
10053676Eae44a_mexperimental allergic encephalomyelitis susceptibility 44a (mouse)Not determined11450789621379532Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse


Expression


Sequence


RefSeq Acc Id: XM_017314869   ⟹   XP_017170358
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38115,273,921 - 5,275,926 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
MGD MGI:5589331 ENTREZGENE
NCBI Gene Gm30172 ENTREZGENE
PhenoGen Gm30172 PhenoGen