Gm34585 (predicted gene, 34585) - Rat Genome Database

Name: Gm34585
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Gm34585 (predicted gene, 34585) Mus musculus

Analyze

Symbol:

Gm34585

Name:

predicted gene, 34585

RGD ID:

9671420

MGI Page

MGI

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	88,669,312 - 88,726,294 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	88,669,309 - 88,726,287 (+)	Ensembl		GRCm39 Ensembl
GRCm38	13	88,521,193 - 88,578,175 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	88,521,190 - 88,578,168 (+)	Ensembl	GRCm38		mm10	GRCm38
Celera	13	92,119,312 - 92,176,503 (+)	NCBI		Celera
Cytogenetic Map	13	C3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:16141072	PMID:16141073

Genomics

Variants

Variants in Gm34585
1945 total Variants

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1301949	Skull20_m	skull morphology 20 (mouse)			Not determined		13	64250821	98250945	Mouse
1300941	Skl6_m	skeletal size (tail length) 6 (mouse)			Not determined		13	64250821	98250945	Mouse
4142147	Mvwf4_m	modifier of von Willebrand factor 4 (mouse)			Not determined			20477612	112898424	Mouse
1301445	Listr2_m	listeriosis resistance 2 (mouse)			Not determined		13	66744601	100744746	Mouse
4141728	Egaq4_m	early growth adjusted QTL 4 (mouse)			Not determined			87901985	112431103	Mouse
10043997	Bw40_m	body weight QTL 40 (mouse)			Not determined		14	79239045	113239162	Mouse
10402414	Sgp5_m	serum gp70 production 5 (mouse)			Not determined		13	56470456	105422186	Mouse
1301610	Dps1_m	delta power in slow-wave sleep 1 (mouse)			Not determined		13	77195862	95730894	Mouse
4142465	Pbwg17_m	postnatal body weight growth 17 (mouse)			Not determined		13	83876060	117876256	Mouse
4140995	Fbtq6_m	femoral bone trait QTL 6 (mouse)			Not determined		13	86341617	120341758	Mouse
4141992	W6q16_m	weight 6 weeks QTL 16 (mouse)			Not determined			55720354	112431103	Mouse
1301593	Heal8_m	wound healing/regeneration 8 (mouse)			Not determined		13	68053999	102054119	Mouse
4141266	Mol3_m	modifier of LPS-response 3 (mouse)			Not determined			76132600	112431103	Mouse
1558741	Ses10_m	salmonella enteritidis susceptibility 10 (mouse)			Not determined		13	82739968	116740106	Mouse
14700691	Cisaq1_m	coxsackieviral infection serum ALT QTL 1 (mouse)					13	86148119	120461536	Mouse
4142241	Tailq3_m	tail length QTL 3 (mouse)			Not determined			55720354	112431103	Mouse
1357553	Cia28_m	collagen induced arthritis 28 (mouse)			Not determined		13	56629249	96239162	Mouse
10412163	Wra1_m	wheel running activity 1 (mouse)			Not determined		13	59132600	93132738	Mouse
14747007	Mancz11_m	mandible centroid size 11 (mouse)					13	70111284	104111284	Mouse
12880414	V125Dq10_m	vitamin D active form serum level QTL 10 (mouse)					13	78036508	112036508	Mouse
12880402	Emlq1_m	emotional learning QTL 1 (mouse)					13	78108858	96866553	Mouse
10045623	Heal18_m	wound healing regeneration 18 (mouse)			Not determined		13	79239045	113239162	Mouse
1357563	Bmch6_m	bone mechanical trait 6 (mouse)			Not determined		13	55384980	89385140	Mouse
4140959	W10q17_m	weight 10 weeks QTL 17 (mouse)			Not determined			55720354	112431103	Mouse
4142314	Tailaq3_m	tail length adjusted QTL 3 (mouse)			Not determined			55720354	112431103	Mouse
14696726	Kidrq3_m	kidney weight, right QTL 3 (mouse)					13	68217066	102217066	Mouse
12879495	Fexq1_m	fear expression QTL 1 (mouse)					13	78268858	95836553	Mouse
10412235	Scgq5_m	spontaneous crescentic glomerulonephritis QTL 5 (mouse)			Not determined		13	36060908	96239162	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_166903	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC154431	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK133460	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000224910

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	13	88,669,309 - 88,726,287 (+)	Ensembl
GRCm38.p6 Ensembl	13	88,521,190 - 88,578,168 (+)	Ensembl

RefSeq Acc Id:

NR_166903

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	13	88,669,312 - 88,726,294 (+)	NCBI
GRCm38	13	88,521,193 - 88,578,175 (+)	NCBI

Sequence:

show sequence

GCCATCTTGTAACGGCTCCCCTACCCACCCACTCCCACTTCTCCGACTTCTAGGCCCTGGTGTT
TCCCCTGTACTGGGGCATACAAAGTTTGCAAGACCAAGGGGCCTCTCTTCCCAATGATGGCCGA
CTAGGCCATCTTCTGCTACATATGCAGCTAGAGACACTTCATCTCTGACTGTCGAATAGTGTAT
GGAGATTCACTAGAAAAGCTATGCCTGTGAGTCTACAAGGATTTCGTCATTATGGCATTCCCAT
GGAGATTTCATTACATTGGTTATTGCTTAATTGCCTGGATTCATTCATACAGACAATACGAAGC
ACCACAACCTTTAACAATCAACATTTTAAAACTTCACCAAACCCAGACTATATTGTGGAAGCTG
GGAAGTGCTTGCTGACAGTAGCCTGATAGGGCTGTCTCCTGACAGGCTCTGCCAGAGCCTGACA
AATACAGAGATGGATGCTTGGAGCCAACCATTGGACAAAGCAGAAGGTCCCTGATGGAGGAGTT
GGAGAAGGAACTGAAGGAGCTAAGAGAGTTCACGGCCCCATGGGGAGAAACAGTGTCAAGAAGC
CAGACCCCCTGGAGTTCCCAGGGACTAGACCACAAACCAAAGCATACACATGGAGGGACCCATG
GTTCTGGCCTCATATGTGGCCTTGTTGGACATCAGTGGGAGGAGTGGCCCTTGGGCCTGAGGGT
GTTTGATGCCCCAGTGTAGGGGAATTCCAGAGCAGAAAGAAGATGGAAGTGGGTGAGTAGGTGT
GGGAGCACCCTCATAGAGGCAGCGGGGAGATGGATAGGATACGGTGTTTCTGAAGGGGAGACCT
GGAAAGAGGAAAACACTTGAAATGTAAATAAAGAAAATATCCAGTAAAAAAG

hide sequence

Promoters

RGD ID:

15094346

Promoter ID:

EPDNEWNC_M2250

Type:

initiation region

Name:

Gm34585_1

Description:

predicted gene, 34585 [Source:MGI Symbol;Acc:MGI:5593744]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	13	88,521,223 - 88,521,283	EPDNEWNC

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000114273	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000224910	ENTREZGENE
MGD	MGI:5593744	ENTREZGENE
NCBI Gene	Gm34585	ENTREZGENE
PhenoGen	Gm34585	PhenoGen
RNAcentral	URS0001980FBB	RNACentral

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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