Platr13 (pluripotency associated transcript 13) - Rat Genome Database

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Gene: Platr13 (pluripotency associated transcript 13) Mus musculus
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Symbol: Platr13
Name: pluripotency associated transcript 13
RGD ID: 9670485
MGI Page MGI
Description: Is active in nucleus.
Type: ncrna (Ensembl: lncRNA)
Previously known as: Gm12139
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39 Ensembl1141,109,664 - 41,111,923 (+)EnsemblGRCm39 Ensembl
GRCm381141,218,905 - 41,219,967 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1141,218,837 - 41,221,096 (+)EnsemblGRCm38mm10GRCm38
cM Map1124.5NCBI


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IDA)

References
Additional References at PubMed
PMID:26048247  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:123
Count of miRNA genes:120
Interacting mature miRNAs:123
Transcripts:ENSMUST00000133945
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_388587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_388588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000133945
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1141,109,664 - 41,111,923 (+)Ensembl
GRCm38.p6 Ensembl1141,218,837 - 41,221,096 (+)Ensembl
RefSeq Acc Id: XR_388587
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381141,218,905 - 41,219,967 (+)NCBI
RefSeq Acc Id: XR_388588
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381141,218,905 - 41,219,967 (+)NCBI

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000086475 Ensembl
MGD MGI:3651752 ENTREZGENE
NCBI Gene Gm12139 ENTREZGENE
PhenoGen Platr13 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-06-16 Platr13  pluripotency associated transcript 13  Gm12139  predicted gene 12139  Symbol and/or name change 5135510 APPROVED