Gm15524 (predicted gene 15524) - Rat Genome Database

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Gene: Gm15524 (predicted gene 15524) Mus musculus
Analyze
Symbol: Gm15524
Name: predicted gene 15524
RGD ID: 9670237
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391256,731,111 - 56,741,772 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1256,736,703 - 56,739,749 (-)EnsemblGRCm39 Ensembl
GRCm381256,684,326 - 56,694,767 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1256,689,918 - 56,692,964 (-)EnsemblGRCm38mm10GRCm38
Celera1257,850,161 - 57,857,515 (-)NCBICelera
Cytogenetic Map12C1NCBI
cM Map1224.53NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:24316575  


Genomics

Variants

.
Variants in Gm15524
341 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:75
Count of miRNA genes:73
Interacting mature miRNAs:74
Transcripts:ENSMUST00000159874
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
1301989Hdlq18_mHDL QTL 18 (mouse)Not determined122916068563160884Mouse
1300636Gct2_mgranulosa cell tumorigenesis 2 (mouse)Not determined122916068563160884Mouse
4141843Moen3_mmodifier of engrailed QTL 3 (mouse)Not determined122980158463801733Mouse
14747008Mancz10_mmandible centroid size 10 (mouse)122986352263863522Mouse
10402492Dipa8_mdrug induced psychomotor activation 8 (mouse)Not determined123493387268934019Mouse
1300818Bbaa10_mB.burgdorferi-associated arthritis 10 (mouse)Not determined123509100465511019Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124169317590887526Mouse
1357757Lnopy2_mlens opacity 2 (mouse)Not determined125284662686846796Mouse
1357749Vtbt13_mvertebral trabecular bone trait 13 (mouse)Not determined125313200287132145Mouse
12904004Opfaq11_mopen field activity QTL 11 (mouse)125315562457276756Mouse
12832727Ahrq1_mairway hyperresponsiveness QTL 1 (mouse)125469591082665939Mouse
12903999Opfaq8_mopen field activity QTL 8 (mouse)125490765357870585Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000159874
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1256,736,703 - 56,739,749 (-)Ensembl
GRCm38.p6 Ensembl1256,689,918 - 56,692,964 (-)Ensembl
RefSeq Acc Id: XR_003950119
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391256,732,778 - 56,741,772 (-)NCBI
GRCm381256,685,993 - 56,694,767 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003950120
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391256,732,778 - 56,741,772 (-)NCBI
GRCm381256,685,993 - 56,694,767 (-)NCBI
Sequence:
RefSeq Acc Id: XR_381621
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391256,731,111 - 56,738,465 (-)NCBI
GRCm381256,684,326 - 56,691,680 (-)NCBI
Sequence:
Promoters
RGD ID:15094107
Promoter ID:EPDNEWNC_M2025
Type:multiple initiation site
Name:Gm15524_1
Description:predicted gene 15524 [Source:MGI Symbol;Acc:MGI:3782971]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381256,692,919 - 56,692,979EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000089894 Ensembl
MGD MGI:3782971 ENTREZGENE
NCBI Gene Gm15524 ENTREZGENE
PhenoGen Gm15524 PhenoGen