Gm29582 (predicted gene 29582) - Rat Genome Database

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Pathways
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Gene: Gm29582 (predicted gene 29582) Mus musculus
Analyze
No known orthologs.
Symbol: Gm29582
Name: predicted gene 29582
RGD ID: 9668872
MGI Page MGI
Description:
Type: ncrna (Ensembl: protein-coding)
RefSeq Status: MODEL
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39Y30,681,020 - 30,693,891 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblY30,661,878 - 30,693,906 (-)EnsemblGRCm39 Ensembl
GRCm39 EnsemblY31,558,069 - 31,590,101 (-)EnsemblGRCm39 Ensembl
GRCm38Y30,725,675 - 30,738,546 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblY31,602,724 - 31,634,756 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 EnsemblY30,706,533 - 30,738,561 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic MapYA2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Gm29582
4 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:58
Count of miRNA genes:57
Interacting mature miRNAs:58
Transcripts:ENSMUST00000179076
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_882315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC175381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000179076   ⟹   ENSMUSP00000136022
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblY31,560,808 - 31,588,669 (-)Ensembl
GRCm38.p6 EnsemblY31,605,463 - 31,633,324 (-)Ensembl
RefSeq Acc Id: ENSMUST00000185667   ⟹   ENSMUSP00000139915
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblY30,661,878 - 30,693,906 (-)Ensembl
GRCm38.p6 EnsemblY30,706,533 - 30,738,561 (-)Ensembl
RefSeq Acc Id: ENSMUST00000190946   ⟹   ENSMUSP00000140770
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblY31,558,069 - 31,590,101 (-)Ensembl
GRCm38.p6 EnsemblY31,602,724 - 31,634,756 (-)Ensembl
RefSeq Acc Id: ENSMUST00000249297
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblY31,558,090 - 31,590,091 (-)Ensembl
RefSeq Acc Id: ENSMUST00000249298   ⟹   ENSMUSP00000159673
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblY30,661,886 - 30,693,896 (-)Ensembl
RefSeq Acc Id: XR_882315
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39Y30,681,020 - 30,693,891 (-)NCBI
GRCm38Y30,725,675 - 30,738,546 (-)NCBI
Sequence:
Protein Sequences
Ensembl Protein ENSMUSP00000139915.2
  ENSMUSP00000140770.2
  ENSMUSP00000159673.1
Reference Protein Sequences
RefSeq Acc Id: ENSMUSP00000139915   ⟸   ENSMUST00000185667
RefSeq Acc Id: ENSMUSP00000136022   ⟸   ENSMUST00000179076
RefSeq Acc Id: ENSMUSP00000140770   ⟸   ENSMUST00000190946
RefSeq Acc Id: ENSMUSP00000159673   ⟸   ENSMUST00000249298
Protein Domains
XLR/SYCP3/FAM9

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A087WRT9-F1-model_v2 AlphaFold A0A087WRT9 1-222 view protein structure


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000094789 Ensembl, UniProtKB/TrEMBL
  ENSMUSG00000100467 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000185667.2 UniProtKB/TrEMBL
  ENSMUST00000190946.7 UniProtKB/TrEMBL
  ENSMUST00000249298.1 UniProtKB/TrEMBL
InterPro Cor1/Xlr/Xmr UniProtKB/TrEMBL
MGD MGI:5580288 ENTREZGENE
NCBI Gene Gm29582 ENTREZGENE
PANTHER EG546282 PROTEIN-RELATED UniProtKB/TrEMBL
  XLR/SCP3/FAM9 UniProtKB/TrEMBL
Pfam Cor1 UniProtKB/TrEMBL
PhenoGen Gm29582 PhenoGen
UniProt A0A087WRT9_MOUSE UniProtKB/TrEMBL
  A0A9L6KE33_MOUSE UniProtKB/TrEMBL