Gm32556 (predicted gene, 32556) - Rat Genome Database

Name: Gm32556
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Gm32556 (predicted gene, 32556) Mus musculus

Analyze

Symbol:

Gm32556

Name:

predicted gene, 32556

RGD ID:

9666770

MGI Page

MGI

Description:

Type:

ncrna

RefSeq Status:

MODEL

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	66,071,377 - 66,077,060 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm38	5	65,914,591 - 65,919,717 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
Celera	5	63,210,563 - 63,216,279 (-)	NCBI		Celera
Cytogenetic Map	5	C3.1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:16141072	PMID:16141073

Genomics

Variants

Variants in Gm32556
189 total Variants

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1301693	Sle6_m	systemic lupus erythematosus susceptibility 6 (mouse)			Not determined		5	8890693	87841837	Mouse
11341716	Rvfs3_m	Rift Valley fever susceptibility 3 (mouse)					5	26441234	138455402	Mouse
4140990	Lgq6_m	late growth QTL 6 (mouse)			Not determined			32133234	100777931	Mouse
4141219	W10q16_m	weight 10 weeks QTL 16 (mouse)			Not determined			32133234	100777931	Mouse
10043995	Hbnr9_m	Heligmosomoides bakeri nematode resistance 9 (mouse)			Not determined		5	33488667	67488876	Mouse
1301845	Lxw4_m	lupus BXSB x NZW 4 (mouse)			Not determined		5	35694462	69694594	Mouse
11049561	Lmr24e_m	leishmaniasis resistance 24e (mouse)					5	35694462	69694594	Mouse
11049559	Lmr24c_m	leishmaniasis resistance 24c (mouse)					5	35694462	69694594	Mouse
11049558	Lmr24b_m	leishmaniasis resistance 24b (mouse)					5	35694462	69694594	Mouse
1301223	Hdlq7_m	HDL QTL 7 (mouse)			Not determined		5	35854568	69854714	Mouse
13464252	Ahl10_m	age related hearing loss, early onset 10 (mouse)					5	35854568	69854714	Mouse
4141647	Hrvhf1_m	heart rate variability, high frequency 1 (mouse)			Not determined			36433423	70433423	Mouse
1301170	Lith13_m	lithogenic gene 13 (mouse)			Not determined		5	36494486	70494598	Mouse
1301524	Lmb2_m	lupus in MRL and B6 F2 cross (mouse)			Not determined		5	37581488	112465722	Mouse
13464246	Ahl11_m	age related hearing loss, early onset 11 (mouse)					5	37643777	71643896	Mouse
1300951	Gbvq1_m	gallstone bladder volume QTL 1 (mouse)			Not determined		5	38111681	72111798	Mouse
13464245	Ahl12_m	age related hearing loss, early onset 12 (mouse)					5	38111681	72111798	Mouse
1301698	Pcfm4_m	periosteal circumference and femur length 4 (mouse)			Not determined		5	44585843	78585965	Mouse
13207584	Mwmlpt4_m	Morris water maze latency to platform, training, 4 (mouse)					5	46322606	80322606	Mouse
13207588	Mwmlpa4_m	Morris water maze latency to platform, all, 4 (mouse)					5	46322606	80322606	Mouse
14746981	Manh57_m	mandible shape 57 (mouse)					5	47169742	81169742	Mouse
11041665	Lmr24_m	leishmaniasis resistance 24 (mouse)					5	52694462	107321041	Mouse
11041899	Lmr24a_m	leishmaniasis resistance 24a (mouse)					5	52694462	107321041	Mouse
4142064	Tmc1m4_m	Tmc1 modifier 4 (mouse)			Not determined		5	54500177	127001072	Mouse
1301243	Bmd2_m	bone mineral density 2 (mouse)			Not determined		5	55388334	100455525	Mouse
4142317	Rgcs1_m	retinal ganglion cell susceptible 1 (mouse)			Not determined			55388334	108762627	Mouse
13464248	Ahl13_m	age related hearing loss, early onset 13 (mouse)					5	55645874	89645995	Mouse
10043962	Obq27_m	obesity QTL 27 (mouse)			Not determined		5	56285655	90285655	Mouse
10044005	Ahl7_m	age related hearing loss 7 (mouse)			Not determined		5	58330502	92330641	Mouse
11040591	Lmr3c_m	leishmaniasis resistance 3c (mouse)					5	59602801	93602980	Mouse
11040592	Lmr3d_m	leishmaniasis resistance 3d (mouse)					5	59602801	93602980	Mouse
11040589	Lmr3a_m	leishmaniasis resistance 3a (mouse)					5	59602801	93602980	Mouse
11040590	Lmr3b_m	leishmaniasis resistance 3b (mouse)					5	59602801	93602980	Mouse
1301843	Listr1_m	listeriosis resistance 1 (mouse)			Not determined		5	60246081	94246203	Mouse
13464247	Ahl14_m	age related hearing loss, early onset 14 (mouse)					5	60403062	94403160	Mouse
11252124	Modvl6_m	modifier of vacuolated lens 6 (mouse)					5	62650568	96650688	Mouse
4142428	Modvl1_m	modifier of vacuolated lens 1 (mouse)			Not determined			62650568	96650688	Mouse
1301010	ahl2_m	age related hearing loss 2 (mouse)			Not determined		5	62650568	96650688	Mouse
13464250	Ahl15_m	age related hearing loss, early onset 15 (mouse)					5	62650568	96650688	Mouse
10045972	Tir5_m	trypanosome infection response 5 (mouse)			Not determined		5	63705442	104387065	Mouse
11049560	Lmr24d_m	leishmaniasis resistance 24d (mouse)					5	64374877	98374996	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_376986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_868457	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC156029	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK040580	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XR_376986

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	5	66,071,377 - 66,076,097 (-)	NCBI
GRCm38	5	65,914,591 - 65,918,754 (-)	NCBI

Sequence:

show sequence

AAAATGAGCCTAAATCAACCAGGAAGGAGAGGTGCTCTTTTTTTTCTCTCTGAGAGGCTATGAC
AGCCTTCTCCTGCACCCCAAGGTGCTAAAAGCAGCCACACTCCCTCAGGCTTTCTGCCACCCCG
CTGGGACTCAGTCCTGTTAGAGTAGGAGTTCCATCCCTGATCATCAGGGGCCTGTCCTCTCAAG
GCAGATGAGGGCTGATTCTTCAGGGATCAAGTGTCCTTCCTCTGTAGCCTAAACCAGGCCCCCA
AAAGAAGACTGAAGAGAGAGTGAGGGCTCTGGCAGGCTGCTTCTAGTTTCCTCTTCCTTCAGTT
CTCTCTCATTGTTGTTAGTCTCCAGCAACCTGGCCTTGGCCCCGTCCCCTCACGAATTCATTCA
TTGTTAATAGGCATGAGCAGTGGAGGTAGGAGATAGGAGCCCTACACATCCCTGAGTCCTGTTC
CAGTCCTGGACCACCAGACAAGCTTTGTCAAACGCTCAGCCCCAGATTTCATGTTGTGAGATCA
GTCTTGGGACTTTGAGCAATCTCAAAAAGGAGAGACTCCACCGAAGAGCTAGAGCGGTTTCTTC
GTAGCTGTATTTGCAGTCAGATGCCTCTCTGTGGATAGATGGCCTCTCCGCTGAAGAACAGAGA
ACCGATGTTTAACAACCAGAGATGGGGCTATAGGCCAGTAATTCAAACCTCAGCATAATAAAAT
AAAATGAAAACACAGAAAGCTTAAAACAAGTTTCAGGTGTTTTAATCTATGACGTTTATTTGCC
TGGATTCTGTACTCTGGTCACCAAATGGGTCTACATCTTTTGAGTGACAACTAGGTAAGTTTTC
TTTGGGCCCAGAATCGATTTGTCAATACAAAGTCATGTTGAATACCGAACGCCACAACGTGGTT
CATCTTACATGTGCTCAGCAAAATGGCTGTGGGTACCTGTGTGAATGGAAAACCTACCCCCCCC
CCCCCTGTGGAAAGGAAGCCTTGACTTGGACTGACTCATTTGTGCAGAAGTCACCTAATGGTGG
CCAGCAGGCACCCTTTTTGATGTGGCTTCCCTCTCAGGCTTATCCTGTCAAACTGTCAAAGAGG
AATAAGGTTCCTTCCATTTGACTCACCTTGGCTGTAACACCGCGGAAGGTGGAGAAATGTCAAA
GTACTCTGAAGGAGGTTGGGTGAGCTTGCTCACTGAGCTCTGTTAAGATGGCCGAGAACCTGAC
AATCTGCTACTTGGATATGGACATATGGAGATGGGTGGTCTCTGGCAAACTGACTAACAGGCAC
AGAGCATTGCCAGAAAGGAAATACAGAATTATAAGTTCCCTACAAGGCTCTTAGGCATGTGTAT
CACTATCCCTTGTTCCCCTGTACCCTCTCGTGCTCATTCCTCCTTGCTGGTCCTTTTCCCATCC
AAGTAGCCCCCACTTCTGTTTTATCTTGTTATGTATGTACATGCATTATATAAACCTGGGCTCT
GCATATATATATAAGAGCGAGCATACGATATATGTCTGAGTCAGGCTTATTTTACTTAACATCA
TCTCC

hide sequence

RefSeq Acc Id:

XR_868457

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	5	66,071,377 - 66,077,060 (-)	NCBI
GRCm38	5	65,914,591 - 65,919,717 (-)	NCBI

Sequence:

show sequence

ACAGGAAACCGCTGTGAAAATCAGGAGAAGAAACTAGTTTCCATAGAGGGACTGCACTGCACAC
ACCAGGGAGACATGTGCTGGAGAAGCCACGAGGCAGACAGTCCCACAGAGGCCGGAGAGCCATG
ACAAAGATCCTACCGTGATGGCAGCTCACGGAAACCTGGGCATGAGCAGTGGAGGTAGGAGATA
GGAGCCCTACACATCCCTGAGTCCTGTTCCAGTCCTGGACCACCAGACAAGCTTTGTCAAACGC
TCAGCCCCAGATTTCATGTTGTGAGATCAGTCTTGGGACTTTGAGCAATCTCAAAAAGGAGAGA
CTCCACCGAAGAGCTAGAGCGGTTTCTTCGTAGCTGTATTTGCAGTCAGATGCCTCTCTGTGGA
TAGATGGCCTCTCCGCTGAAGAACAGAGAACCGATGTTTAACAACCAGAGATGGGGCTATAGGC
CAGTAATTCAAACCTCAGCATAATAAAATAAAATGAAAACACAGAAAGCTTAAAACAAGTTTCA
GGTGTTTTAATCTATGACGTTTATTTGCCTGGATTCTGTACTCTGGTCACCAAATGGGTCTACA
TCTTTTGAGTGACAACTAGGTAAGTTTTCTTTGGGCCCAGAATCGATTTGTCAATACAAAGTCA
TGTTGAATACCGAACGCCACAACGTGGTTCATCTTACATGTGCTCAGCAAAATGGCTGTGGGTA
CCTGTGTGAATGGAAAACCTACCCCCCCCCCCCCTGTGGAAAGGAAGCCTTGACTTGGACTGAC
TCATTTGTGCAGAAGTCACCTAATGGTGGCCAGCAGGCACCCTTTTTGATGTGGCTTCCCTCTC
AGGCTTATCCTGTCAAACTGTCAAAGAGGAATAAGGTTCCTTCCATTTGACTCACCTTGGCTGT
AACACCGCGGAAGGTGGAGAAATGTCAAAGTACTCTGAAGGAGGTTGGGTGAGCTTGCTCACTG
AGCTCTGTTAAGATGGCCGAGAACCTGACAATCTGCTACTTGGATATGGACATATGGAGATGGG
TGGTCTCTGGCAAACTGACTAACAGGCACAGAGCATTGCCAGAAAGGAAATACAGAATTATAAG
TTCCCTACAAGGCTCTTAGGCATGTGTATCACTATCCCTTGTTCCCCTGTACCCTCTCGTGCTC
ATTCCTCCTTGCTGGTCCTTTTCCCATCCAAGTAGCCCCCACTTCTGTTTTATCTTGTTATGTA
TGTACATGCATTATATAAACCTGGGCTCTGCATATATATATAAGAGCGAGCATACGATATATGT
CTGAGTCAGGCTTATTTTACTTAACATCATCTCC

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
MGD	MGI:5591715	ENTREZGENE
NCBI Gene	Gm32556	ENTREZGENE
PhenoGen	Gm32556	PhenoGen

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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