Mir6237 (microRNA 6237) - Rat Genome Database

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Gene: Mir6237 (microRNA 6237) Mus musculus
Analyze
Symbol: Mir6237
Name: microRNA 6237
RGD ID: 9664851
MGI Page MGI
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: Gm27411; mmu-mir-6237
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3999,894,436 - 9,894,526 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl99,894,436 - 9,894,526 (+)EnsemblGRCm39 Ensembl
GRCm3899,894,431 - 9,894,521 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl99,894,431 - 9,894,521 (+)EnsemblGRCm38mm10GRCm38
Celera97,270,368 - 7,270,458 (+)NCBICelera
Cytogenetic Map9A1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:16381832   PMID:22580345  


Genomics

Variants

.
Variants in Mir6237
2 total Variants
miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:9430
Count of gene targets:4843
Count of transcripts:7345
Interacting mature miRNAs:mmu-miR-6237
Prediction methods:Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300899Chol6_mcholesterol 6 (mouse)Not determined9129902913Mouse
35673312Ari7_mantibody response to influenza 7, day 45, IgG3 (mouse)9780000122211296Mouse
1300849Sles4_msystemic lupus erythmatosus suppressor 4 (mouse)Not determined9910756237306370Mouse
13434920Dcollq1_mdifferential colonization level QTL 1 (mouse)9130341840Mouse
4142326Tgq19_mtriglyceride QTL 19 (mouse)Not determined121060750Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NR_105745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC154651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000183808
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl99,894,436 - 9,894,526 (+)Ensembl
GRCm38.p6 Ensembl99,894,431 - 9,894,521 (+)Ensembl
RefSeq Acc Id: NR_105745
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3999,894,436 - 9,894,526 (+)NCBI
GRCm3899,894,431 - 9,894,521 (+)NCBI
Celera97,270,368 - 7,270,458 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000098408 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000183808 ENTREZGENE
MGD MGI:5530793 ENTREZGENE
miRBase MI0021584 ENTREZGENE
NCBI Gene Mir6237 ENTREZGENE
PhenoGen Mir6237 PhenoGen
RNAcentral URS000075B575 RNACentral
  URS000075E75B RNACentral