Astx1c (amplified spermatogenic transcripts X encoded 1C) - Rat Genome Database

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Gene: Astx1c (amplified spermatogenic transcripts X encoded 1C) Mus musculus
Analyze
Symbol: Astx1c
Name: amplified spermatogenic transcripts X encoded 1C
RGD ID: 9663695
MGI Page MGI
Description:
Type: protein-coding (Ensembl: lncRNA)
Previously known as: Gm14962
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39 EnsemblX124,642,666 - 124,645,551 (+)EnsemblGRCm39 Ensembl
GRCm38X125,725,844 - 125,737,930 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX125,735,043 - 125,737,928 (+)EnsemblGRCm38mm10GRCm38
cM MapX49.81NCBI


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:16356265  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:61
Count of miRNA genes:59
Interacting mature miRNAs:61
Transcripts:ENSMUST00000177724
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000177724
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX124,642,666 - 124,645,551 (+)Ensembl
GRCm38.p6 EnsemblX125,735,043 - 125,737,928 (+)Ensembl
RefSeq Acc Id: XM_006535842   ⟹   XP_006535905
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X125,725,844 - 125,737,930 (+)NCBI
RefSeq Acc Id: XM_006535843   ⟹   XP_006535906
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X125,725,844 - 125,737,930 (+)NCBI
RefSeq Acc Id: XM_006535844   ⟹   XP_006535907
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X125,725,844 - 125,737,930 (+)NCBI
RefSeq Acc Id: XM_006535845   ⟹   XP_006535908
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X125,725,844 - 125,737,930 (+)NCBI
RefSeq Acc Id: XM_006535846   ⟹   XP_006535909
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X125,725,844 - 125,737,930 (+)NCBI
RefSeq Acc Id: XM_006535847   ⟹   XP_006535910
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X125,725,844 - 125,737,930 (+)NCBI
RefSeq Acc Id: XM_006535848   ⟹   XP_006535911
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X125,725,844 - 125,737,930 (+)NCBI
RefSeq Acc Id: XM_006535849   ⟹   XP_006535912
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X125,725,844 - 125,737,930 (+)NCBI

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000095008 Ensembl
MGD MGI:3705323 ENTREZGENE
NCBI Gene Astx1c ENTREZGENE
PhenoGen Astx1c PhenoGen