Gm30695 (predicted gene, 30695) - Rat Genome Database

Name: Gm30695
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Gm30695 (predicted gene, 30695) Mus musculus

Analyze

Symbol:

Gm30695

Name:

predicted gene, 30695

RGD ID:

9662646

MGI Page

MGI

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

MODEL

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	93,283,401 - 93,328,273 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	93,269,055 - 93,283,962 (-)	Ensembl		GRCm39 Ensembl
GRCm38	16	93,486,513 - 93,531,385 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	93,472,167 - 93,487,074 (-)	Ensembl	GRCm38		mm10	GRCm38
Celera	16	94,565,149 - 94,614,528 (-)	NCBI		Celera
Cytogenetic Map	16	C4	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:16141072	PMID:16141073

Genomics

Variants

Variants in Gm30695
1791 total Variants

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1301125	Sluc27_m	susceptibility to lung cancer 27 (mouse)			Not determined		16	61608644	95608764	Mouse
4141113	Tgq28_m	triglyceride QTL 28 (mouse)			Not determined			62986646	96986646	Mouse
1300928	Etia_m	ethanol induced activation (mouse)			Not determined		16	63313907	97314016	Mouse
1558740	Bpq9_m	blood pressure QTL 9 (mouse)			Not determined		16	63327336	97327472	Mouse
1302194	Pgia10_m	proteoglycan induced arthritis 10 (mouse)			Not determined		16	68600722	98008968	Mouse
1301032	Tauph_m	tau phosphorylation (mouse)			Not determined		16	69076132	98008968	Mouse
11049573	Lmr18b_m	leishmaniasis resistance 18b (mouse)					16	69127611	98008968	Mouse
11049574	Lmr18a_m	leishmaniasis resistance 18a (mouse)					16	69127611	98008968	Mouse
4142262	Lmr18_m	leishmaniasis resistance 18 (mouse)			Not determined		16	69127611	98008968	Mouse
11522753	Cocia19_m	cocaine-induced activity, QTL 19 (mouse)					16	69254482	98008968	Mouse
1301598	Renf2_m	renal failure 2 (mouse)			Not determined		16	70380252	98008968	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_385066	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_385067	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC135673	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC160993	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK048844	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000231757

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	93,269,055 - 93,283,962 (-)	Ensembl
GRCm38.p6 Ensembl	16	93,472,167 - 93,487,074 (-)	Ensembl

RefSeq Acc Id:

XR_385066

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	16	93,283,401 - 93,328,273 (-)	NCBI
GRCm38	16	93,486,513 - 93,531,385 (-)	NCBI

Sequence:

show sequence

TCAAAGAAACGAGACACAACTGTGCCAGGAATGGAGGAATGGCGACTCCGGTTAACGTCAGTTG
GGATGATGATTATGGAAGACCAAGAAGCCTCAGGTTTCAGACCCCAGGATGATCCCAAGTAGGG
CTTTGTCCCAGCGTTCTCCAGAAGACAGGTTCTGGGGAATGTCTCACGCTGCGCCCTAGCATGG
CGGCGAAGTGGAAGACTGGGCAGGTGTGTGAAGGAAGATAGAACCTCATAAACTCTTGTTACAG
AAACCAGTCCAGCTCTGCAAGACTGAGAATCCACTCAGATGCAATTATGAAGGCGGAAAAGGCA
CCCGAGTGAGGTCTTTGCAGATCCTGGCAGGCTTCGTTCCTTTGATCCTGGCAGATGTACTTCC
ATTGTCTCAGCCAGGAAGCAGACCCTGGAGCAGATGTGGTCTCATAGCTCAGGTCACAAGCCCC
CGCTTCACATCCTTGGATATCCTGAGGCAAGGCTGAGGGAAATTGCCAACAGCTTCTGAGCTAT
GATAGGGGCTGTTTGATTTGTGAGGTTACCAGCCAACCTGGGGGAAGGAGTAACATTGAGATTC
ACTGGCAGTAGGAAAGGCTAACCCAGGAGAAAACCCACACAATAATATTTTAATACAAAATAC

hide sequence

RefSeq Acc Id:

XR_385067

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	16	93,283,401 - 93,290,161 (-)	NCBI
GRCm38	16	93,486,513 - 93,493,273 (-)	NCBI

Sequence:

show sequence

GTGATATCTAAGTGTGCGACATCAAGCAGTAAAATGTGAAGAGCTAGATGCAATTATGAAGGCG
GAAAAGGCACCCGAGTGAGGTCTTTGCAGATCCTGGCAGGCTTCGTTCCTTTGATCCTGGCAGA
TGTACTTCCATTGTCTCAGCCAGGAAGCAGACCCTGGAGCAGATGTGGTCTCATAGCTCAGGTC
ACAAGCCCCCGCTTCACATCCTTGGATATCCTGAGGCAAGGCTGAGGGAAATTGCCAACAGCTT
CTGAGCTATGATAGGGGCTGTTTGATTTGTGAGGTTACCAGCCAACCTGGGGGAAGGAGTAACA
TTGAGATTCACTGGCAGTAGGAAAGGCTAACCCAGGAGAAAACCCACACAATAATATTTTAATA
CAAAATAC

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000116595	Ensembl
MGD	MGI:5589854	ENTREZGENE
NCBI Gene	Gm30695	ENTREZGENE
PhenoGen	Gm30695	PhenoGen

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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