Gm31616 (predicted gene, 31616) - Rat Genome Database

Name: Gm31616
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Gm31616 (predicted gene, 31616) Mus musculus

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Symbol:

Gm31616

Name:

predicted gene, 31616

RGD ID:

9660234

MGI Page

MGI

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	39,243,712 - 39,245,608 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	39,243,705 - 39,247,415 (-)	Ensembl		GRCm39 Ensembl
GRCm38	10	39,367,716 - 39,369,612 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
Celera	10	40,253,210 - 40,255,058 (-)	NCBI		Celera
Cytogenetic Map	10	B1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Genomics

Variants

Variants in Gm31616
81 total Variants

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
39128215	Lwq17_m	liver weight QTL 17 (mouse)					10	12704051	84079784	Mouse
1302160	Mbis2_m	Mycobacterium bovis-induced systemic lupus erythematosus 2 (mouse)			Not determined		10	20283185	56031223	Mouse
1558865	Lith21_m	lithogenic gene 21 (mouse)			Not determined		10	8525003	42525126	Mouse
4141943	W6q6_m	weight 6 weeks QTL 6 (mouse)			Not determined			12704051	84079784	Mouse
27226772	Tibl13_m	tibia length 13, 10 week (mouse)					10	18875748	129635869	Mouse
1357656	Hrtq3_m	heart weight QTL 3 (mouse)			Not determined		10	12704051	84079784	Mouse
26884426	Cvht1_m	cranial vault height 1, 5 week (mouse)					10	24675898	121035905	Mouse
4142380	W3q11_m	weight 3 weeks QTL 11 (mouse)			Not determined			12704051	84079784	Mouse
27226764	Tibl19_m	tibia length 19, 16 week (mouse)					10	39175996	129635869	Mouse
1357825	Kidpq2_m	kidney weight percentage QTL 2 (mouse)			Not determined		10	12704051	84079784	Mouse
1301003	Lmblgq4_m	limb length QTL 4 (mouse)			Not determined		10	21591192	68091639	Mouse
1301386	Sysbp1_m	systolic blood pressure 1 (mouse)			Not determined		10	10108265	87401095	Mouse
10045632	Heal16_m	wound healing/regeneration 16 (mouse)			Not determined		10	30974499	64974630	Mouse
1301129	Alcp15_m	alcohol preference locus 15 (mouse)			Not determined		10	9890264	43890391	Mouse
10755518	Chol16_m	cholesterol 16 (mouse)					10	18915043	52915043	Mouse
1301448	Pas11_m	pulmonary adenoma susceptibility 11 (mouse)			Not determined		10	9890264	43890391	Mouse
1302092	Ath11_m	atherosclerosis 11 (mouse)			Not determined		10	6151945	58693521	Mouse
1302067	Scc9_m	colon tumor susceptibility 9 (mouse)			Not determined		10	18259333	125575232	Mouse
1357558	Bmch4_m	bone mechanical trait 4 (mouse)			Not determined		10	31577136	65577284	Mouse
1302133	Alcp16_m	alcohol preference locus 16 (mouse)			Not determined		10	9890264	43890391	Mouse
26884403	Cvht8_m	cranial vault height 8, 16 week (mouse)					10	22875899	91035862	Mouse
27095920	Pglq9_m	pelvic girdle length QTL 9, 10 week (mouse)					10	33775996	70835830	Mouse
26884394	Humsd3_m	humerus midshaft diameter 3, 10 week (mouse)					10	22375899	51076096	Mouse
1300898	Cfid_m	cystic fibrosis intestinal distress (mouse)			Not determined		10	29720403	63720483	Mouse
1558757	Eae34_m	experimental allergic encephalomyelitis susceptibility 34 (mouse)			Not determined		10	21408154	114217230	Mouse
13208561	Wght8_m	weight 8 (mouse)					10	4950000	43875996	Mouse
1357740	Obsty3_m	obesity 3 (mouse)			Not determined		10	8235478	116190980	Mouse
27095911	Pglq15_m	pelvic girdle length QTL 15, 16 week (mouse)					10	39175996	129635869	Mouse
4141956	Egq7_m	early growth QTL 7 (mouse)			Not determined			12704051	84079784	Mouse
1357864	Scfpq1_m	subcutaneous fat pad percentage QTL 1 (mouse)			Not determined		10	12704051	84079784	Mouse
4142209	Psrs1_m	psoriasis susceptibility 1 (mouse)			Not determined		10	26890264	46720483	Mouse
4142272	W10q5_m	weight 10 weeks QTL 5 (mouse)			Not determined			12704051	84079784	Mouse

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_168582	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_168583	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC153537	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000240969

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	10	39,243,710 - 39,245,627 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000241350

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	10	39,243,705 - 39,245,648 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000241500

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	10	39,243,710 - 39,245,615 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000241520

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	10	39,243,705 - 39,245,644 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000243249

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	10	39,243,705 - 39,245,676 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000286379

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	10	39,244,265 - 39,247,415 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000286380

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	10	39,243,712 - 39,245,627 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000286381

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	10	39,243,712 - 39,245,608 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000286382

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	10	39,244,334 - 39,245,608 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000286383

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	10	39,244,338 - 39,245,608 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000286384

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	10	39,244,338 - 39,245,608 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000286385

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	10	39,243,712 - 39,245,583 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000286386

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	10	39,244,344 - 39,245,572 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000286387

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	10	39,244,338 - 39,245,562 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000286388

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	10	39,244,344 - 39,245,564 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000286389

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	10	39,244,338 - 39,245,070 (-)	Ensembl

RefSeq Acc Id:

NR_168582

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	10	39,243,712 - 39,245,608 (-)	NCBI
GRCm38	10	39,367,716 - 39,369,612 (-)	NCBI

Sequence:

show sequence

ACAGTGGTGGCGGGCAGCCTGCGGTGCGCACGGCCACAGGGTGTGTGAGAGGATGCGAGGTTGG
CGGAGAAGGAAGAGTTGTGTGTCTGAGGATCGTGTGGAGTTGCGAGTTGGTGAGGTGGGCAGGA
GAGTGCGCAGGGAATGAGCTGCTTTCCACTTTGCCAGTGGAGACTGGCACCTGCCACTCCAGCC
TCACAGCCATGGGAACCTATTTCTCCAAAGAGATAGCCTCGCCTTTGAGAGTGGGAGGATAAAA
TGGAAAGGTGTTAAGAATGGCGATGGCAAATTAGGGAAGTGAGGAGCAAAGTAGAGAAGTACCA
TTGCAGAAACTGGGAAAGCTAGGACCAGCAAACGCACAACAAATATGCTCTTTTGAGAAATTTG
CTGCTATTCAGTAAATGATCCTCATGTGATGGACGAGGAAACTGAGGACAAGAGAAGGTGACAC
TGAGGAATTCCATGTCCGATCTCTTCCTGAAACCTGGAGCAGATGGTACTAAGTCACTCCATTG
TTAATAATTTCTTTGAGAGGAGTCTCATTTTTGGCATCTGCAGCATAATAGCTTCTTCACGTAA
TTAGTGGACCAATAAGAGGCAAAATGATTAAATGACAAATTAACCAACTCCCAGCAAGACTCTG
TTCTGTTTTTTTCTCTTTACTTACTTTTGAAAAAAATAAATAAAAACAAAAAAACAGGAAAACC
CCACAACTCTTCCTCCGGATAGCTTTAAAGGGATTCTGTCTCCACAAGAAGATTTGCTGATGTT
GTGAACAAGTGAGAAAGCCCTGGAAAGATGTTAGCATTATTTCCCATTTTGATCTGCTCCCAAA
GGTCATCAAAGTAGATTTGACTTAAACAGTGTCCTCAGCCTACCCAAGGCAAGCCATGCTTTGT
TCTAAACCTGAAATTTTATTTTCTTACAGGCAGTATCTATTACCCAACAAATGGAGAGACATTG
TTCTAGAATTTCTCTTAGATTTGGTTGTTATTTGCTTGGGTTTTTGTTTGTTCTGTTTCTCTCA
CCTTTAAGTCCCCTGTTTCTAGTCTAGTGTTCTTTTTTGGTTTGTCTAATCTGTGTTTCCTGTT
TTGCTTTCAATGTATATTTAGTGTTATTAGCTAAGCTGTTTCCCATTTTGAGATTTTTGTTTTC
TTACCAATCAAACAAGAAAATAAAAATGGTTACTGAAACTGGAAAAAAAAACTAATGTGCAAGG
AAGGGAGATGGATCAGTGAATAAATGGCTTGCTGCTGTA

hide sequence

RefSeq Acc Id:

NR_168583

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	10	39,243,712 - 39,245,608 (-)	NCBI
GRCm38	10	39,367,716 - 39,369,612 (-)	NCBI

Sequence:

show sequence

ACAGTGGTGGCGGGCAGCCTGCGGTGCGCACGGCCACAGGGTGTGTGAGAGGATGCGAGGTTGG
CGGAGAAGGAAGAGTTGTGTGTCTGAGGATCGTGTGGAGTTGCGAGTTGGTGAGTGCTCTTTTG
AGAAATTTGCTGCTATTCAGTAAATGATCCTCATGTGATGGACGAGGAAACTGAGGACAAGAGA
AGGTGACACTGAGGAATTCCATGTCCGATCTCTTCCTGAAACCTGGAGCAGATGGTACTAAGTC
ACTCCATTGTTAATAATTTCTTTGAGAGGAGTCTCATTTTTGGCATCTGCAGCATAATAGCTTC
TTCACGTAATTAGTGGACCAATAAGAGGCAAAATGATTAAATGACAAATTAACCAACTCCCAGC
AAGACTCTGTTCTGTTTTTTTCTCTTTACTTACTTTTGAAAAAAATAAATAAAAACAAAAAAAC
AGGAAAACCCCACAACTCTTCCTCCGGATAGCTTTAAAGGGATTCTGTCTCCACAAGAAGATTT
GCTGATGTTGTGAACAAGTGAGAAAGCCCTGGAAAGATGTTAGCATTATTTCCCATTTTGATCT
GCTCCCAAAGGTCATCAAAGTAGATTTGACTTAAACAGTGTCCTCAGCCTACCCAAGGCAAGCC
ATGCTTTGTTCTAAACCTGAAATTTTATTTTCTTACAGGCAGTATCTATTACCCAACAAATGGA
GAGACATTGTTCTAGAATTTCTCTTAGATTTGGTTGTTATTTGCTTGGGTTTTTGTTTGTTCTG
TTTCTCTCACCTTTAAGTCCCCTGTTTCTAGTCTAGTGTTCTTTTTTGGTTTGTCTAATCTGTG
TTTCCTGTTTTGCTTTCAATGTATATTTAGTGTTATTAGCTAAGCTGTTTCCCATTTTGAGATT
TTTGTTTTCTTACCAATCAAACAAGAAAATAAAAATGGTTACTGAAACTGGAAAAAAAAACTAA
TGTGCAAGGAAGGGAGATGGATCAGTGAATAAATGGCTTGCTGCTGTA

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000119997	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000241350	ENTREZGENE
	ENSMUST00000241520	ENTREZGENE
MGD	MGI:5590775	ENTREZGENE
NCBI Gene	Gm31616	ENTREZGENE
PhenoGen	Gm31616	PhenoGen
RNAcentral	URS0001BBE416	RNACentral
	URS0001BBE4D0	RNACentral

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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