Gm15883 (predicted gene 15883) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Gm15883 (predicted gene 15883) Mus musculus
Analyze
Symbol: Gm15883
Name: predicted gene 15883
RGD ID: 9658113
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39 Ensembl726,823,906 - 26,830,099 (-)EnsemblGRCm39 Ensembl
GRCm38727,124,877 - 27,131,160 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl727,124,481 - 27,130,674 (-)EnsemblGRCm38mm10GRCm38
Celera721,701,751 - 21,708,031 (-)NCBICelera
cM Map715.83NCBI


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:24316575  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:92
Count of miRNA genes:86
Interacting mature miRNAs:88
Transcripts:ENSMUST00000153562
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_391220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_403956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000153562
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl726,823,906 - 26,830,099 (-)Ensembl
GRCm38.p6 Ensembl727,124,481 - 27,130,674 (-)Ensembl
RefSeq Acc Id: XR_391220
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38727,124,877 - 27,131,160 (-)NCBI
RefSeq Acc Id: XR_403956
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera721,701,751 - 21,708,031 (-)NCBI

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000086868 Ensembl
MGD MGI:3801875 ENTREZGENE
NCBI Gene Gm15883 ENTREZGENE
PhenoGen Gm15883 PhenoGen