Mir5617 (microRNA 5617) - Rat Genome Database
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Gene: Mir5617 (microRNA 5617) Mus musculus
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Symbol: Mir5617
Name: microRNA 5617
RGD ID: 9654917
MGI Page MGI
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: Gm25192; mir-5617; mmu-mir-5617
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X20,729,365 - 20,729,421 (-)NCBIGRCm39mm39
GRCm39 EnsemblX20,729,365 - 20,729,421 (-)Ensembl
GRCm38X20,863,126 - 20,863,182 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX20,863,126 - 20,863,182 (-)EnsemblGRCm38mm10GRCm38
CeleraX18,994,265 - 18,994,321 (-)NCBICelera
Cytogenetic MapXA1.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:16381832   PMID:21037258   PMID:21911355  


Genomics


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302195Pbwg10_mpostnatal body weight growth 10 (mouse)Not determinedX126335934Mouse
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7360056151324042Mouse
1301551Spha1_msperm head anomaly 1 (mouse)Not determinedX1039998640832775Mouse
13208553Wght11_mweight 11 (mouse)X1200000060000000Mouse
13208557Lgth13_mbody length 13 (mouse)X1200000060000000Mouse
1558721Bw1_mbody weight QTL 1 (mouse)Not determinedX2074054448090348Mouse

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:19162
Count of gene targets:9794
Count of transcripts:16438
Interacting mature miRNAs:mmu-miR-5617-3p, mmu-miR-5617-5p
Prediction methods:Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000176786
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX20,863,126 - 20,863,182 (-)Ensembl
RefSeq Acc Id: NR_049190
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X20,729,365 - 20,729,421 (-)NCBI
GRCm38X20,863,126 - 20,863,182 (-)NCBI
CeleraX18,994,265 - 18,994,321 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000093408 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000176786 ENTREZGENE
MGD MGI:5454969 ENTREZGENE
miRBase MI0019185 ENTREZGENE
NCBI Gene Mir5617 ENTREZGENE
PhenoGen Mir5617 PhenoGen
RNAcentral URS0000297E82 RNACentral
  URS000075AD5A RNACentral
  URS000075C7D1 RNACentral