Gm11973 (predicted gene 11973) - Rat Genome Database

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Gene: Gm11973 (predicted gene 11973) Mus musculus
Analyze
Symbol: Gm11973
Name: predicted gene 11973
RGD ID: 9652951
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39 Ensembl116,425,425 - 6,443,535 (+)EnsemblGRCm39 Ensembl
GRCm38116,485,081 - 6,493,810 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl116,475,425 - 6,493,535 (+)EnsemblGRCm38mm10GRCm38
Celera116,970,455 - 6,979,320 (+)NCBICelera
cM Map114.19NCBI


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14610273   PMID:18799693   PMID:24316575  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:158
Count of miRNA genes:87
Interacting mature miRNAs:89
Transcripts:ENSMUST00000124274, ENSMUST00000127488, ENSMUST00000155498
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


RefSeq Acc Id: ENSMUST00000124274
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl116,425,477 - 6,443,535 (+)Ensembl
GRCm38.p6 Ensembl116,475,477 - 6,493,535 (+)Ensembl
RefSeq Acc Id: ENSMUST00000127488
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl116,425,425 - 6,440,918 (+)Ensembl
GRCm38.p6 Ensembl116,475,425 - 6,490,918 (+)Ensembl
RefSeq Acc Id: ENSMUST00000155498
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl116,425,465 - 6,443,535 (+)Ensembl
GRCm38.p6 Ensembl116,475,465 - 6,493,535 (+)Ensembl
RefSeq Acc Id: XR_381030
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38116,485,081 - 6,493,810 (+)NCBI
RefSeq Acc Id: XR_381031
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38116,485,081 - 6,493,810 (+)NCBI
RefSeq Acc Id: XR_393792
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera116,970,455 - 6,979,320 (+)NCBI
RefSeq Acc Id: XR_393793
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera116,970,455 - 6,979,320 (+)NCBI
Promoters
RGD ID:15093891
Promoter ID:EPDNEWNC_M1788
Type:multiple initiation site
Name:Gm11973_1
Description:predicted gene 11973 [Source:MGI Symbol;Acc:MGI:3650058]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38116,475,457 - 6,475,517EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000086839 Ensembl
MGD MGI:3650058 ENTREZGENE
NCBI Gene Gm11973 ENTREZGENE
PhenoGen Gm11973 PhenoGen