Ptf1aos (pancreas specific transcription factor 1a, opposite strand) - Rat Genome Database

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Gene: Ptf1aos (pancreas specific transcription factor 1a, opposite strand) Mus musculus
Analyze
Symbol: Ptf1aos
Name: pancreas specific transcription factor 1a, opposite strand
RGD ID: 9651074
MGI Page MGI
Description: ASSOCIATED WITH abnormal anus morphology; abnormal nucleus pulposus morphology; abnormal skeleton morphology
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: Gm13336
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39219,446,319 - 19,451,485 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl219,446,319 - 19,451,485 (-)EnsemblGRCm39 Ensembl
GRCm38219,441,508 - 19,446,674 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl219,441,508 - 19,446,674 (-)EnsemblGRCm38mm10GRCm38
Celera219,340,490 - 19,345,853 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map213.36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mouse MP Annotation Import Pipeline RGD automated import pipeline
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:23436999   PMID:24316575  


Genomics

Variants

.
Variants in Ptf1aos
95 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:130
Count of miRNA genes:117
Interacting mature miRNAs:128
Transcripts:ENSMUST00000122978
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10045633Heal15_mwound healing/regeneration 15 (mouse)Not determined2121989642Mouse
4141836Tgq11_mtriglyceride QTL 11 (mouse)Not determined125324559Mouse
4142333Tgq10_mtriglyceride QTL 10 (mouse)Not determined125324559Mouse
1301838Sluc16_msusceptibility to lung cancer 16 (mouse)Not determined2126529589Mouse
12904743Carcdq3_mcardiac collagen deposition QTL 3 (mouse)2323494028179150Mouse
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1301980Fcsa5_mfemoral cross-sectional area 5 (mouse)Not determined2767911541679261Mouse
1301790Pcfm1_mperiosteal circumference and femur length 1 (mouse)Not determined2823629642236396Mouse
10043876Adip22_madiposity 22 (mouse)Not determined2830805142308240Mouse
1300624Insq7_minsulin QTL 7 (mouse)Not determined2938444643384575Mouse
10755513Amzn4_manatomical modifier of Zfp423 4 (mouse)2938444643384575Mouse
12903993Opfaq1_mopen field activity QTL 1 (mouse)2967669127022642Mouse
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212953766556453Mouse
1301641Sbmd2_mspinal bone mineral density 2 (mouse)Not determined21421456748214713Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000122978
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl219,446,319 - 19,451,485 (-)Ensembl
GRCm38.p6 Ensembl219,441,508 - 19,446,674 (-)Ensembl
RefSeq Acc Id: NR_131924
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39219,446,319 - 19,451,485 (-)NCBI
GRCm38219,441,508 - 19,446,674 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000085388 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000122978 ENTREZGENE
MGD MGI:3651438 ENTREZGENE
NCBI Gene Ptf1aos ENTREZGENE
PhenoGen Ptf1aos PhenoGen
RNAcentral URS00007826A0 RNACentral