Gm11963 (predicted gene 11963) - Rat Genome Database

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Gene: Gm11963 (predicted gene 11963) Mus musculus
Analyze
Symbol: Gm11963
Name: predicted gene 11963
RGD ID: 9644326
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39115,435,880 - 5,456,249 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl115,448,659 - 5,456,757 (+)EnsemblGRCm39 Ensembl
GRCm38115,485,880 - 5,506,249 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl115,498,840 - 5,505,699 (+)EnsemblGRCm38mm10GRCm38
Celera115,989,878 - 5,999,350 (+)NCBICelera
Cytogenetic Map11A1NCBI
cM Map113.6NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14610273   PMID:18799693   PMID:24200680   PMID:24316575   PMID:27899360  


Genomics

Variants

.
Variants in Gm11963
488 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:108
Count of miRNA genes:104
Interacting mature miRNAs:108
Transcripts:ENSMUST00000149826
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357722Vtbt11_mvertebral trabecular bone trait 11 (mouse)Not determined11123880487Mouse
1300768Tshp9_mtooth shape 9 (mouse)Not determined11125976374Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11125976374Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11125976374Mouse
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27095914Pglq16_mpelvic girdle length QTL 16, 16 week (mouse)11325000018150000Mouse
27095919Pglq10_mpelvic girdle length QTL 10, 10 week (mouse)11325000018450000Mouse
27095925Pglq5_mpelvic girdle length QTL 5, 5 week (mouse)11325000019750000Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
10053676Eae44a_mexperimental allergic encephalomyelitis susceptibility 44a (mouse)Not determined11450789621379532Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
27226735Metcl16_mmetatarsal-calcaneal length 16, 16 week (mouse)11525000035090827Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000149826
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl115,448,678 - 5,456,757 (+)Ensembl
GRCm38.p6 Ensembl115,498,840 - 5,505,699 (+)Ensembl
RefSeq Acc Id: ENSMUST00000241883
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl115,448,684 - 5,456,249 (+)Ensembl
RefSeq Acc Id: ENSMUST00000243884
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl115,448,662 - 5,449,261 (+)Ensembl
RefSeq Acc Id: ENSMUST00000246459
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl115,448,659 - 5,449,677 (+)Ensembl
RefSeq Acc Id: NR_166837
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39115,435,880 - 5,456,249 (+)NCBI
GRCm38115,485,880 - 5,506,249 (+)NCBI
Sequence:
RefSeq Acc Id: NR_166838
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39115,448,634 - 5,456,249 (+)NCBI
GRCm38115,498,634 - 5,506,249 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000085189 Ensembl
MGD MGI:3652248 ENTREZGENE
NCBI Gene Gm11963 ENTREZGENE
PhenoGen Gm11963 PhenoGen
RNAcentral URS000198101C RNACentral
  URS000198104C RNACentral