Gm36848 (predicted gene, 36848) - Rat Genome Database

Name: Gm36848
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Gm36848 (predicted gene, 36848) Mus musculus

Analyze

Symbol:

Gm36848

Name:

predicted gene, 36848

RGD ID:

9643523

MGI Page

MGI

Description:

Type:

ncrna

RefSeq Status:

MODEL

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	121,367,672 - 121,377,068 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm38	7	121,768,449 - 121,777,845 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
Celera	7	121,660,328 - 121,666,334 (-)	NCBI		Celera
Cytogenetic Map	7	F2	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Genomics

Variants

Variants in Gm36848
292 total Variants

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
25314307	Mlh1fc2_m	MLH1 foci count 2 (mouse)					7	6502999	133501729	Mouse
12792978	Fbmd3_m	femoral bone mineral density 3, females only (mouse)					7	7050288	142367832	Mouse
1301158	Eae4_m	susceptibility to experimental allergic encephalomyelitis 4 (mouse)			Not determined		7	19147398	141919804	Mouse
13208555	Lgth10_m	body length 10 (mouse)					7	51649748	125599172	Mouse
27226751	Femd5_m	femur midshaft diameter 5, 10 week (mouse)					7	53249748	143153737	Mouse
27226778	Femd11_m	femur midshaft diameter 11, 16 week (mouse)					7	56949748	134001729	Mouse
26884408	Bzwq13_m	bi-zygomatic width QTL 13, 16 week (mouse)					7	61749748	121399223	Mouse
27095916	Scvln15_m	sacral vertebrae length 2, 16 week (mouse)					7	61749748	123699223	Mouse
26884440	Sklq4_m	skull length QTL 4, 5 week (mouse)					7	65249748	126499172	Mouse
26884444	Sklq8_m	skull length QTL 8, 10 week (mouse)					7	67849748	124199223	Mouse
26884451	Sklq14_m	skull length QTL 14, 16 week (mouse)					7	67849748	124999172	Mouse
27095910	Pglq13_m	pelvic girdle length QTL 13, 16 week (mouse)					7	73049748	125699172	Mouse
27095933	Ulnl3_m	ulna length 3, 5 week (mouse)					7	73149748	143153737	Mouse
27226745	Metcl9_m	metatarsal-calcaneal length 9, 10 week (mouse)					7	74849748	122199223	Mouse
27226781	Tibl3_m	tibia length 3, 5 week (mouse)					7	74849748	122199223	Mouse
26884398	Humsd6_m	humerus midshaft diameter 6, 16 week (mouse)					7	78649748	136901729	Mouse
27095930	Ulnl10_m	ulna length 10, 16 week (mouse)					7	80849748	126699172	Mouse
27095923	Pglq3_m	pelvic girdle length QTL 3, 5 week (mouse)					7	81249748	124199223	Mouse
27095903	Scvln10_m	sacral vertebrae length 2, 10 week (mouse)					7	81449748	126499172	Mouse
27226765	Tibl18_m	tibia length 18, 16 week (mouse)					7	81849748	126499172	Mouse
27226763	Feml20_m	femur length 20, 16 week (mouse)					7	85049208	124199223	Mouse
27226769	Tibl12_m	tibia length 12, 10 week (mouse)					7	87249208	126499172	Mouse
27226790	Feml15_m	femur length 15, 10 week (mouse)					7	87249208	126499172	Mouse
1357664	Nba3_m	New Zealand Black autoimmunity 3 (mouse)			Not determined		7	91482996	125483156	Mouse
1301937	Skull10_m	skull morphology 10 (mouse)			Not determined		7	91482996	125483156	Mouse
1300528	Ssial3_m	susceptibility to sialadenitis 3 (mouse)			Not determined		7	93391848	127392041	Mouse
1301478	Eae26_m	susceptibility to experimental allergic encephalomyelitis 26 (mouse)			Not determined		7	98164922	132165010	Mouse
13524850	Asrq7_m	acoustic startle response 7 (mouse)					7	98394974	132394974	Mouse
10412104	Tons2_m	tongue size 2 (mouse)			Not determined		7	99837716	133837716	Mouse
11039524	Tbbr3_m	Trypanosoma brucei brucei response 3 (mouse)					7	100750722	134750843	Mouse
1301447	Fembm3_m	femoral bone morphometry 3 (mouse)			Not determined		7	100993261	134993342	Mouse
1357460	Vtbt4_m	vertebral trabecular bone trait 4 (mouse)			Not determined		7	101693381	135693530	Mouse
1301105	Cfld4_m	cystic fibrosis lung disease 4 (mouse)			Not determined		7	101693381	135693530	Mouse
1300721	Cfbw3_m	cystic fibrosis body weight 3 (mouse)			Not determined		7	101693381	135693530	Mouse
4142312	Nilac4_m	nicotine induced locomotor activity 4 (mouse)			Not determined		7	102485219	136485380	Mouse
5491192	Mobq1_m	multigenic obesity QTL 1 (mouse)			Not determined		7	105250663	139250811	Mouse
13524852	Asrq7a_m	acoustic startle response 7a (mouse)					7	105350008	139350008	Mouse
14700684	Civq1_m	cerebral infarct volume QTL 1 (mouse)					7	109707335	143707335	Mouse
14700687	Civq5_m	cerebral infarct volume QTL 5 (mouse)					7	109707335	143707335	Mouse
14700688	Civq6_m	cerebral infarct volume QTL 6 (mouse)					7	109707335	143707335	Mouse
11059562	Lmr21b_m	leishmaniasis resistance 21b (mouse)					7	110967235	144967336	Mouse
10402499	Lmr21_m	leishmaniasis resistance 21 (mouse)			Not determined		7	110967235	144967336	Mouse
1302032	Alcp12_m	alcohol preference locus 12 (mouse)			Not determined		7	111166122	144995196	Mouse
1301898	Alcp14_m	alcohol preference locus 14 (mouse)			Not determined		7	111166122	144995196	Mouse
1300670	Sluc19_m	susceptibility to lung cancer 19 (mouse)			Not determined		7	111166122	144995196	Mouse
4142444	Femwf5_m	femur work to failure 5 (mouse)			Not determined			112552248	144995196	Mouse
1300747	Skts2_m	skin tumor susceptibility 2 (mouse)			Not determined		7	112922733	144995196	Mouse
38501072	Stsl7_m	Salmonella typhimurium susceptibility locus 7 (mouse)					7	115699235	128501724	Mouse
1300677	Bmd9_m	bone mineral density 9 (mouse)			Not determined		7	116634089	144995196	Mouse
15092059	Wogrme1_m	week one growth rate, maternal effect 1 (mouse)					7	117199227	134101729	Mouse
11059561	Lmr21a_m	leishmaniasis resistance 21a (mouse)					7	117750722	127967336	Mouse
1357711	Adbg1_m	adult body growth 1 (mouse)			Not determined		7	118693381	144398314	Mouse
1301773	Stheal7_m	soft tissue heal 7 (mouse)			Not determined		7	119132573	144995196	Mouse
1558745	Tsiq1_m	T-cell secretion of IL-4 QTL 1 (mouse)			Not determined		7	119485219	125141349	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_001778283	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001778284	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC165081	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XR_001778283

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	7	121,367,672 - 121,377,068 (-)	NCBI
GRCm38	7	121,768,449 - 121,777,845 (-)	NCBI

Sequence:

show sequence

GGTCAAGTCAAAGCTGTGTCTGAGTATCTGCTATCTTCTTTGACCTGATAATCTATAGCCATCA
CCCTCAAACAGCAAGACTTCAGGTCATGGTCCAGAAAGCCAAATTGTATTTTCTGTCTAGAGAT
CAACTTTCAACCAAGCATTAAATGCTCCCATGTGACCAGTTTCTTCCCATGAAGAAGGAGGTGA
CGCAGACACTATCTTTGCTCCCAAGAGGCTCTATCAGGAAGTCTCAGAATACACTGTGGTCCCA
ACAGTTCTTGTGCACAAAACCTGCCTGAAGCCAACACAGAAAGAAAATAGTAGCCTGCCTAAAA
CAACCTGCTTCTTTGTTCTGCCTCACCTTGGGCCCAAAGCAACAGATCCAGACAACCTTGGAAG
GAGCCCTCTGAAACCAGTTCCTGACATACATGAGTGGATGAAAACTTATACCAGGGGGTGAACA
GCATGCGATGCTAAGAGCTTCGGCTTCTCGGGACAAGGGAAAGCTTGGCAGAGGTGGTGAGGTT
TGCACCTGTCCTGGAAGGGTGAGTGGAGAAGGAGAAAAGGTGACACTGTGGGAGTCAAGCAGGC
GTGGAGATGGCTGAAGCCAAGAAGTGTGCGCGCCCATCTACTAGAGGACAATTAAGCCAGATGC
TGTCGGCCTCACCTTTGACACACCCTGCAGCAACTCCAGCCTTGCTGGAAGTGTTCCTGCTGGT
GACATCATGCCAGAGCCGGCCAGTTCCACGAATCTAAGGACACAGTCCCCGATTGTCCTGTGAG
CCATGCCCAAGTGAGCGTCTCCTGCACGGTCCCTGTCAGCACCAGTTGGAGCCACCAGGAGCCC
AGCCAGGCTTATGCCCTGGATGCTTGGCTGCATCAGCACACTCCCTCTGGGGAGTGGAAGTGCC
ATGTCACCTACACTCATCATGACCTCCTTCCTGTTAGCTGACTCCCTGAGAACCAGTGATAGAG
GTGGTGACTGTAGGCACAGGCATGGGGACGAGTGGAACCATGTCTTGTAGGGTCCCCACAGCCT
CTCTTTCATGAGGGGTCTACCCTGGAATCTACCAGTCTCTGTCCCTGTGTGTCACTGAATCTCT
GAATGCAGGTCTTTCTGATCTGTGCATGAAGGACCTCCTTCTAGTCTAGATCCTTGGTGCTAAG
CCTCCTTCTCTTTCCACCCCAAGTAACATCAGCTTTATACTGAATGCATGCAGGGATTGCATTC
AGGATAGGTGAATGAGGGCACTCATGCCAGCAAAGCAGGCTTCTTGGGTTCAAATCCCATATCT
GCAATTTCCTGGCTAAGTCATCTTGAGCAGATAGCCTGCCCTAGTTTCTATACACACTTATTGG
ACTAGCCTAGGAGCTGGCAAATGATTTCTGGAAAAGGCCAATGTTTCAATTACTCAATTGTGTT
AATTCAGCTTTTATAACAGTCACAAACAAAGTATAAATAAATTGGTATGATCGATTATCAATAA
AACTTTATTTATAAA

hide sequence

RefSeq Acc Id:

XR_001778284

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	7	121,367,672 - 121,374,824 (-)	NCBI
GRCm38	7	121,768,449 - 121,775,601 (-)	NCBI

Sequence:

show sequence

GATAGGTGAGTAGTTGGATAAGTGTATAATGCATGTGTATGAATGGGTGCATGGATGGATATAT
AGATGGTTAAGTGGATGGATAGGTGGATGGATGGGTGGATGCACTGATAGAGATAGATAGATAG
ATAGATAGATAGATAGGAGGAAGGATGATGGGTATATTGATTATAGATGAGCAGCTGTAGATTA
AAACCCTTAGACATTTGCTCTGAGGTTGATGGAGGCCAAGGTTAATTGTCTTACAAGACTGACA
TTTTCTCACCCCAGTGCCCTCGCTCTGCTTTCTCAGGTCAGCACCTTGATTGCTTTCATGTTCT
TGGTTTGGGAGCTCCTCCAAGCCAGAGTGGTATGAAAAAATGGCAACATGACGTATTATGGGGA
CCTGTCACCATGGAGTAGGGGTGGCTTGAGTTTTCTCCTCTGGCTTTGTTCCTTTTCCCATTCT
CTATCTGTCCTGTGTGTCTGTTACCTGTGCTGAACACTGGAGGCTCTTGGAAAAATCACTCCTT
ATCCTACCCTCTTCTCATGTTCCCATGCTTTAAAGCTCAGGGTACTCCCTCCCTGTTCAGAATA
AGTGCAGAATCCAGGACTGGTCCATCATGATTTCATCCCTGGACTGCACTGTTTGATTCGGGAA
AGGGCTGACGGCCCGAATGCGTGAACACAGCTCACTCAGCTTCTTTGTTCTGCCTCACCTTGGG
CCCAAAGCAACAGATCCAGACAACCTTGGAAGGAGCCCTCTGAAACCAGTTCCTGACATACATG
AGTGGATGAAAACTTATACCAGGGGGTGAACAGCATGCGATGCTAAGAGCTTCGGCTTCTCGGG
ACAAGGGAAAGCTTGGCAGAGGTGGTGAGGTTTGCACCTGTCCTGGAAGGGTGAGTGGAGAAGG
AGAAAAGGTGACACTGTGGGAGTCAAGCAGGCGTGGAGATGGCTGAAGCCAAGAAGTGTGCGCG
CCCATCTACTAGAGGACAATTAAGCCAGATGCTGTCGGCCTCACCTTTGACACACCCTGCAGCA
ACTCCAGCCTTGCTGGAAGTGTTCCTGCTGGTGACATCATGCCAGAGCCGGCCAGTTCCACGAA
TCTAAGGACACAGTCCCCGATTGTCCTGTGAGCCATGCCCAAGTGAGCGTCTCCTGCACGGTCC
CTGTCAGCACCAGTTGGAGCCACCAGGAGCCCAGCCAGGCTTATGCCCTGGATGCTTGGCTGCA
TCAGCACACTCCCTCTGGGGAGTGGAAGTGCCATGTCACCTACACTCATCATGACCTCCTTCCT
GTTAGCTGACTCCCTGAGAACCAGTGATAGAGGTGGTGACTGTAGGCACAGGCATGGGGACGAG
TGGAACCATGTCTTGTAGGGTCCCCACAGCCTCTCTTTCATGAGGGGTCTACCCTGGAATCTAC
CAGTCTCTGTCCCTGTGTGTCACTGAATCTCTGAATGCAGGTCTTTCTGATCTGTGCATGAAGG
ACCTCCTTCTAGTCTAGATCCTTGGTGCTAAGCCTCCTTCTCTTTCCACCCCAAGTAACATCAG
CTTTATACTGAATGCATGCAGGGATTGCATTCAGGATAGGTGAATGAGGGCACTCATGCCAGCA
AAGCAGGCTTCTTGGGTTCAAATCCCATATCTGCAATTTCCTGGCTAAGTCATCTTGAGCAGAT
AGCCTGCCCTAGTTTCTATACACACTTATTGGACTAGCCTAGGAGCTGGCAAATGATTTCTGGA
AAAGGCCAATGTTTCAATTACTCAATTGTGTTAATTCAGCTTTTATAACAGTCACAAACAAAGT
ATAAATAAATTGGTATGATCGATTATCAATAAAACTTTATTTATAAA

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
MGD	MGI:5596007	ENTREZGENE
NCBI Gene	Gm36848	ENTREZGENE
PhenoGen	Gm36848	PhenoGen

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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