Gm29478 (predicted gene 29478) - Rat Genome Database
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Gene: Gm29478 (predicted gene 29478) Mus musculus
Analyze
Symbol: Gm29478
Name: predicted gene 29478
RGD ID: 9640675
MGI Page MGI
Description:
Type: ncrna
RefSeq Status: MODEL
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39991,285,546 - 91,489,288 (+)NCBIGRCm39mm39
GRCm38991,403,493 - 91,605,906 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl991,404,474 - 91,562,818 (+)EnsemblGRCm38mm10GRCm38
Celera990,994,210 - 91,198,950 (+)NCBICelera
Cytogenetic Map9E3.2- E3.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:24316575  


Genomics


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300848Skull13_mskull morphology 13 (mouse)Not determined95946266493462846Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959990000109260000Mouse
1301636Lith5_mlithogenic gene 5 (mouse)Not determined966207024100207122Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975775364114474379Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
10054068El8_mepilepsy 8 (mouse)Not determined972977005106977152Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982910333116910428Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978640645112640755Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982910333116910428Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
1301241Renf1_mrenal failure 1 (mouse)Not determined95212317899910428Mouse
1301172Fembrs6_mfemur breaking strength 6 (mouse)Not determined95911710593117252Mouse
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93739490198819654Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989977005118938021Mouse
11081165Psl6_mpromotion susceptibility QTL 6 (mouse)96513390995640755Mouse
5491195Mobq8_mmultigenic obesity QTL 8 (mouse)Not determined95946266493462846Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
1301302Pas4_mpulmonary adenoma susceptibility 4 (mouse)Not determined969239845103239920Mouse
10045638Heal29_mwound healing/regeneration 29 (mouse)Not determined967124167101124167Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
10412174Habiir4_mhyperoxic acute lung injury imprinted region 4 (mouse)Not determined96936046598819654Mouse
1301803Stheal9_msoft tissue heal 9 (mouse)Not determined95911710593117252Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979397810113397888Mouse
1301621Hpic1_mhaloperidol-induced catalepsy 1 (mouse)Not determined969546513103546645Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982910333116910428Mouse
1357610Vtbt8_mvertebral trabecular bone trait 8 (mouse)Not determined968897510102897652Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975775364114474379Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981798268115798392Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
1301869Tbbmd4_mtotal body bone mineral density 4 (mouse)Not determined976117105101528921Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
1301611Lrnx3_mlearning contextual 3 (mouse)Not determined96224248596242599Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976535936110536130Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974368177108368325Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984528818118528921Mouse
1301924Bmd10_mbone mineral density 10 (mouse)Not determined968897510102897652Mouse
1301456Adip5_madiposity 5 (mouse)Not determined95946266493462846Mouse
10412180Msam3_mmuscle, skeletal, activity measure 3 (mouse)Not determined985897510108641186Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
4141224Dxmod_mdoxorubicin nephropathy modifier (mouse)Not determined49541121101528921Mouse
1301573Etohcta8_methanol conditioned taste aversion 8 (mouse)Not determined972977005106977152Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000191272
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl991,404,474 - 91,562,818 (+)Ensembl
RefSeq Acc Id: XR_001779257
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39991,286,406 - 91,445,479 (+)NCBI
GRCm38991,404,352 - 91,563,426 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003948204
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39991,286,404 - 91,482,809 (+)NCBI
GRCm38991,404,351 - 91,600,756 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003948205
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39991,286,028 - 91,489,288 (+)NCBI
GRCm38991,403,975 - 91,600,756 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003948206
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39991,286,028 - 91,445,479 (+)NCBI
GRCm38991,403,975 - 91,563,426 (+)NCBI
Sequence:
RefSeq Acc Id: XR_379701
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39991,286,404 - 91,482,809 (+)NCBI
GRCm38991,404,351 - 91,600,756 (+)NCBI
Sequence:
RefSeq Acc Id: XR_870997
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39991,286,403 - 91,489,288 (+)NCBI
GRCm38991,404,350 - 91,605,906 (+)NCBI
Sequence:
RefSeq Acc Id: XR_870998
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39991,286,403 - 91,489,288 (+)NCBI
GRCm38991,404,351 - 91,600,756 (+)NCBI
Sequence:
RefSeq Acc Id: XR_870999
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39991,286,405 - 91,445,479 (+)NCBI
GRCm38991,404,352 - 91,563,426 (+)NCBI
Sequence:
RefSeq Acc Id: XR_871000
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39991,286,028 - 91,489,288 (+)NCBI
GRCm38991,403,975 - 91,600,756 (+)NCBI
Sequence:
RefSeq Acc Id: XR_871001
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39991,286,405 - 91,430,585 (+)NCBI
GRCm38991,404,352 - 91,548,532 (+)NCBI
Sequence:
RefSeq Acc Id: XR_871002
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39991,285,546 - 91,489,288 (+)NCBI
GRCm38991,403,493 - 91,600,756 (+)NCBI
Sequence:
Promoters
RGD ID:15093645
Promoter ID:EPDNEWNC_M1553
Type:single initiation site
Name:Gm29478_1
Description:predicted gene 29478 [Source:MGI Symbol;Acc:MGI:5580184]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38991,404,524 - 91,404,584EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000100341 Ensembl
MGD MGI:5580184 ENTREZGENE
NCBI Gene Gm29478 ENTREZGENE
PhenoGen Gm29478 PhenoGen